Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010917.1

Orthogroup ID

OG0017842

Physical Location & Seq

Genomic Coordinates Reverse (-)

83322 .. 88701

Gene Structure 5380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010917.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atggtggcaggcttggctattactagtgttttagggtttgatttttttattgttggtaatatgacactactaaaggtgtggcagagacaatcttctctgtcgcggtctcggagatcgttcctgttctggagttgggtcagcagtggtggcgaaacagtctggctagacaatcatccttggccttctagtgggtccttcctatctgggatcgggtcggaggcgatggcgttttggagcagtggtggatggatggtgtcgacaataggcggcgagccccgagaccggtttcccagcttcaagctctcaactttacccaggtacaccatttccctcatcgctgtaatttcagacattatcttatcggagacgccagatccgcatggcagcgacggcttcagcgccgccgtggagcccggaagacgacctcctcctcaagaacaccatctagtgttcaaatttgctttttcgcttgtgaacttgaaacgattgcagggaggtgcttctctagaagcacttgccagaggagcggtcagattctcccgcaaattcacggtgggagatttgcgggagcggtggcacgcgctgctctacgacgccgacgtgtcgcttgaactttccccaaatttttcgtcacagtcgctgttacagctcactaatctctacgcgatttcgccgtcgccgacttggcgcaagtccgagccactccgagatccgataggcctttgcttcgtcttcaaaaatccgatcaactcttccgatcagcgagaccgaaacctaaacctaggtttcgagagcaatgcggcagtacttgttggctctgatctgcaacagggtgctccggcgctgcaagaggtacgaggacaatgcttcatctccgtcgtgcgtagcagaggctactttggccggaggaaagaggcgaagtacaaactttgttgtgggtttgcaaacgagaccgatgtttgctttggtggcatcgggcttggtgagaaggagatcggcatcatgaactaccctagtgcaacaagtgcggtcgctagcacagactttgttgggcagcaagatggttgtcgtggtctcctgcttggggaggccgccagattgattaggcggtggcgagcggcttctcggaaggaccagagtctaatgttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

FHA MCRS_N

Protein Analysis

383

Amino Acids

42.22

Weight (kDa)

9.3

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017842)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007783
rosa_multiflora	Rmu_sc0002863.1_g000012 Rmu_sc0010917.1_g000016
rosa_roxburghii	Rroxscaffold_1G00027720 Rroxscaffold_2G00137830 Rroxscaffold_5G00364870 Rroxscaffold_5G00364880
rosa_samantha	Rh1BG161800 Rh1DG192100 Rh5AG160500 Rh5CG416400 Rh7DG215300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	527, 571, 1118
AccI	GTMKAC	1 cut(s)	257
AccII	CGCG	3 cut(s)	103, 581, 665
AclWI	GGATC	3 cut(s)	215, 368, 704
AcoI	YGGCCR	1 cut(s)	901
AcsI	RAATTY	3 cut(s)	455, 545, 622
AcuI	CTGAAG	1 cut(s)	379
AcyI	GRCGYC	2 cut(s)	368, 594
AfaI	GTAC	4 cut(s)	320, 807, 855, 923
AfiI	CCNNNNNNNGG	3 cut(s)	188, 282, 1084
AflIII	ACRYGT	1 cut(s)	600
AgeI	ACCGGT	1 cut(s)	282
AgsI	TTSAA	5 cut(s)	298, 454, 481, 611, 736
AhlI	ACTAGT	1 cut(s)	23
AjiI	CACGTC	1 cut(s)	601
AjnI	CCWGG	1 cut(s)	314
AluBI	AGCT	3 cut(s)	294, 301, 649
AluI	AGCT	3 cut(s)	294, 301, 649
Alw21I	GWGCWC	1 cut(s)	838
Alw26I	GTCTC	7 cut(s)	79, 111, 273, 359, 759, 944, 1079
AlwI	GGATC	3 cut(s)	215, 368, 704
AlwNI	CAGNNNCTG	1 cut(s)	640
Ama87I	CYCGRG	1 cut(s)	276
AoxI	GGCC	4 cut(s)	179, 718, 901, 1089
ApeKI	GCWGC	4 cut(s)	384, 583, 844, 1054
ApoI	RAATTY	3 cut(s)	455, 545, 622
ArsI	GACNNNNNNTTYG	2 cut(s)	614, 646
AsiGI	ACCGGT	1 cut(s)	282
AspA2I	CCTAGG	1 cut(s)	781
AspLEI	GCGC	4 cut(s)	401, 583, 690, 844
AspS9I	GGNCC	2 cut(s)	192, 1132
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	1 cut(s)	995
AsuNHI	GCTAGC	1 cut(s)	1034
AvaI	CYCGRG	1 cut(s)	276
AvaII	GGWCC	2 cut(s)	192, 1132
AvrII	CCTAGG	1 cut(s)	781
BanII	GRGCYC	2 cut(s)	276, 414
BbsI	GAAGAC	2 cut(s)	424, 724
Bbv12I	GWGCWC	1 cut(s)	838
BbvI	GCAGC	4 cut(s)	396, 570, 831, 1066
BccI	CCATC	5 cut(s)	217, 240, 244, 450, 1055
BceAI	ACGGC	3 cut(s)	389, 406, 658
BcgI	CGANNNNNNTGC	4 cut(s)	779, 813, 846, 880
BciT130I	CCWGG	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	414
BcoDI	GTCTC	7 cut(s)	79, 111, 273, 359, 759, 944, 1079
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	8 cut(s)	24, 164, 186, 446, 506, 782, 1014, 1035
BfoI	RGCGCY	2 cut(s)	402, 845
BglI	GCCNNNNNGGC	1 cut(s)	685
BisI	GCNGC	9 cut(s)	268, 385, 402, 584, 801, 845, 1055, 1092, 1119
BlnI	CCTAGG	1 cut(s)	781
BlsI	GCNGC	9 cut(s)	269, 386, 403, 585, 802, 846, 1056, 1093, 1120
BmcAI	AGTACT	1 cut(s)	807
Bme1390I	CCNGG	2 cut(s)	316, 414
Bme18I	GGWCC	2 cut(s)	192, 1132
BmeT110I	CYCGRG	1 cut(s)	276
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	2 cut(s)	192, 1132
BmiI	GGNNCC	2 cut(s)	193, 411
BmrFI	CCNGG	2 cut(s)	316, 414
BmsI	GCATC	2 cut(s)	981, 1008
BmtI	GCTAGC	1 cut(s)	1038
BoxI	GACNNNNGTC	1 cut(s)	1137
BpiI	GAAGAC	2 cut(s)	424, 724
BpmI	CTGGAG	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	417
BpuMI	CCSGG	1 cut(s)	414
BsaBI	GATNNNNATC	1 cut(s)	998
BsaHI	GRCGYC	2 cut(s)	368, 594
BsaI	GGTCTC	5 cut(s)	111, 273, 759, 944, 1079
BsaJI	CCNNGG	4 cut(s)	176, 314, 405, 781
BsaWI	WCCGGW	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 282, 1084
Bse118I	RCCGGY	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	802
Bse8I	GATNNNNATC	1 cut(s)	998
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	4 cut(s)	176, 314, 405, 781
BseGI	GGATG	3 cut(s)	172, 251, 255
BseJI	GATNNNNATC	1 cut(s)	998
BseLI	CCNNNNNNNGG	3 cut(s)	188, 282, 1084
BseMI	GCAATG	1 cut(s)	802
BseRI	GAGGAG	3 cut(s)	417, 420, 537
BseXI	GCAGC	4 cut(s)	396, 570, 831, 1066
BseYI	CCCAGC	1 cut(s)	290
Bsh1236I	CGCG	3 cut(s)	103, 581, 665
Bsh1285I	CGRYCG	1 cut(s)	1032
BshFI	GGCC	4 cut(s)	181, 720, 903, 1091
BshTI	ACCGGT	1 cut(s)	282
BsiEI	CGRYCG	1 cut(s)	1032
BsiHKAI	GWGCWC	1 cut(s)	838
BsiHKCI	CYCGRG	1 cut(s)	276
BsiSI	CCGG	4 cut(s)	283, 414, 839, 904
BslI	CCNNNNNNNGG	3 cut(s)	188, 282, 1084
BsmAI	GTCTC	7 cut(s)	79, 111, 273, 359, 759, 944, 1079
BsmBI	CGTCTC	1 cut(s)	359
BsnI	GGCC	4 cut(s)	181, 720, 903, 1091
Bso31I	GGTCTC	5 cut(s)	111, 273, 759, 944, 1079
BsoBI	CYCGRG	1 cut(s)	276
Bsp1286I	GDGCHC	3 cut(s)	276, 414, 838
Bsp143I	GATC	8 cut(s)	113, 207, 373, 709, 744, 757, 820, 993
BspANI	GGCC	4 cut(s)	181, 720, 903, 1091
BspFNI	CGCG	3 cut(s)	103, 581, 665
BspHI	TCATGA	1 cut(s)	1002
BspLI	GGNNCC	2 cut(s)	193, 411
BspOI	GCTAGC	1 cut(s)	1038
BspPI	GGATC	3 cut(s)	215, 368, 704
BspTNI	GGTCTC	5 cut(s)	111, 273, 759, 944, 1079
BsrBI	CCGCTC	3 cut(s)	527, 571, 1118
BsrDI	GCAATG	1 cut(s)	802
BsrFI	RCCGGY	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	4 cut(s)	176, 314, 405, 781
BssMI	GATC	8 cut(s)	113, 207, 373, 709, 744, 757, 820, 993
BssNI	GRCGYC	2 cut(s)	368, 594
BssT1I	CCWWGG	2 cut(s)	176, 781
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	3 cut(s)	157, 553, 636
Bst6I	CTCTTC	1 cut(s)	757
BstACI	GRCGYC	2 cut(s)	368, 594
BstAPI	GCANNNNNTGC	2 cut(s)	583, 1025
BstC8I	GCNNGC	5 cut(s)	10, 272, 579, 1036, 1116
BstDSI	CCRYGG	1 cut(s)	405
BstF5I	GGATG	3 cut(s)	172, 251, 255
BstFNI	CGCG	3 cut(s)	103, 581, 665
BstH2I	RGCGCY	2 cut(s)	402, 845
BstHHI	GCGC	4 cut(s)	401, 583, 690, 844
BstKTI	GATC	8 cut(s)	116, 210, 376, 712, 747, 760, 823, 996
BstMAI	GTCTC	7 cut(s)	79, 111, 273, 359, 759, 944, 1079
BstMBI	GATC	8 cut(s)	113, 207, 373, 709, 744, 757, 820, 993
BstMCI	CGRYCG	1 cut(s)	1032
BstNI	CCWGG	1 cut(s)	316
BstPAI	GACNNNNGTC	1 cut(s)	1137
BstSCI	CCNGG	2 cut(s)	314, 412
BstUI	CGCG	3 cut(s)	103, 581, 665
BstV1I	GCAGC	4 cut(s)	396, 570, 831, 1066
BstV2I	GAAGAC	2 cut(s)	424, 724
BstX2I	RGATCY	2 cut(s)	373, 709
BstYI	RGATCY	2 cut(s)	373, 709
BsuRI	GGCC	4 cut(s)	181, 720, 903, 1091
BtgI	CCRYGG	1 cut(s)	405
BtgZI	GCGATG	2 cut(s)	236, 319
BtrI	CACGTC	1 cut(s)	601
BtsCI	GGATG	3 cut(s)	172, 251, 255
BtsI	GCAGTG	2 cut(s)	148, 244
BtsIMutI	CAGTG	2 cut(s)	148, 244
Cac8I	GCNNGC	5 cut(s)	10, 272, 579, 1036, 1116
CaiI	CAGNNNCTG	1 cut(s)	640
CciI	TCATGA	1 cut(s)	1002
CfoI	GCGC	4 cut(s)	401, 583, 690, 844
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	2 cut(s)	192, 1132
CseI	GACGC	2 cut(s)	376, 602
Csp6I	GTAC	4 cut(s)	319, 806, 854, 922
CspAI	ACCGGT	1 cut(s)	282
CviAII	CATG	2 cut(s)	380, 1003
CviQI	GTAC	4 cut(s)	319, 806, 854, 922
DpnI	GATC	8 cut(s)	115, 209, 375, 711, 746, 759, 822, 995
DpnII	GATC	8 cut(s)	113, 207, 373, 709, 744, 757, 820, 993
EaeI	YGGCCR	1 cut(s)	901
Eam1104I	CTCTTC	1 cut(s)	757
EarI	CTCTTC	1 cut(s)	757
Eco130I	CCWWGG	2 cut(s)	176, 781
Eco147I	AGGCCT	1 cut(s)	720
Eco24I	GRGCYC	2 cut(s)	276, 414
Eco31I	GGTCTC	5 cut(s)	111, 273, 759, 944, 1079
Eco47I	GGWCC	2 cut(s)	192, 1132
Eco57I	CTGAAG	1 cut(s)	379
Eco88I	CYCGRG	1 cut(s)	276
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	314
EcoT14I	CCWWGG	2 cut(s)	176, 781
EcoT38I	GRGCYC	2 cut(s)	276, 414
ErhI	CCWWGG	2 cut(s)	176, 781
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	2 cut(s)	383, 1006
FaiI	YATR	3 cut(s)	62, 381, 1004
FatI	CATG	2 cut(s)	379, 1002
FauI	CCCGC	2 cut(s)	548, 558
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	9 cut(s)	268, 385, 402, 584, 801, 845, 1055, 1092, 1119
FokI	GGATG	3 cut(s)	159, 258, 262
FriOI	GRGCYC	2 cut(s)	276, 414
Fsp4HI	GCNGC	9 cut(s)	268, 385, 402, 584, 801, 845, 1055, 1092, 1119
FspBI	CTAG	8 cut(s)	24, 164, 186, 446, 506, 782, 1014, 1035
GlaI	GCGC	4 cut(s)	400, 582, 689, 843
GluI	GCNGC	9 cut(s)	268, 385, 402, 584, 801, 845, 1055, 1092, 1119
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	148
HaeII	RGCGCY	2 cut(s)	402, 845
HaeIII	GGCC	4 cut(s)	181, 720, 903, 1091
HapII	CCGG	4 cut(s)	283, 414, 839, 904
HgaI	GACGC	2 cut(s)	376, 602
HhaI	GCGC	4 cut(s)	401, 583, 690, 844
Hin1I	GRCGYC	2 cut(s)	368, 594
Hin1II	CATG	2 cut(s)	383, 1006
Hin6I	GCGC	4 cut(s)	399, 581, 688, 842
HinP1I	GCGC	4 cut(s)	399, 581, 688, 842
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	2 cut(s)	534, 1138
HpaII	CCGG	4 cut(s)	283, 414, 839, 904
HphI	GGTGA	1 cut(s)	995
Hpy166II	GTNNAC	3 cut(s)	258, 321, 475
Hpy188III	TCNNGA	5 cut(s)	127, 434, 506, 790, 1003
Hpy8I	GTNNAC	3 cut(s)	258, 321, 475
Hpy99I	CGWCG	5 cut(s)	392, 596, 602, 679, 881
HpyAV	CCTTC	4 cut(s)	192, 205, 982, 1123
HpyCH4III	ACNGT	3 cut(s)	157, 553, 636
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	5 cut(s)	490, 826, 847, 944, 1019
HpySE526I	ACGT	1 cut(s)	600
Hsp92I	GRCGYC	2 cut(s)	368, 594
Hsp92II	CATG	2 cut(s)	383, 1006
HspAI	GCGC	4 cut(s)	399, 581, 688, 842
Kzo9I	GATC	8 cut(s)	113, 207, 373, 709, 744, 757, 820, 993
LmnI	GCTCC	5 cut(s)	234, 409, 524, 568, 841
Lsp1109I	GCAGC	4 cut(s)	396, 570, 831, 1066
LweI	GCATC	2 cut(s)	981, 1008
MaeI	CTAG	8 cut(s)	24, 164, 186, 446, 506, 782, 1014, 1035
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	2 cut(s)	630, 642
MalI	GATC	8 cut(s)	115, 209, 375, 711, 746, 759, 822, 995
MbiI	CCGCTC	3 cut(s)	527, 571, 1118
MboI	GATC	8 cut(s)	113, 207, 373, 709, 744, 757, 820, 993
MboII	GAAGA	4 cut(s)	84, 429, 724, 744
MflI	RGATCY	2 cut(s)	373, 709
MhlI	GDGCHC	3 cut(s)	276, 414, 838
MluCI	AATT	4 cut(s)	342, 455, 545, 622
MlyI	GAGTC	1 cut(s)	1147
MmeI	TCCRAC	1 cut(s)	195
MspI	CCGG	4 cut(s)	283, 414, 839, 904
MspR9I	CCNGG	2 cut(s)	316, 414
MvaI	CCWGG	1 cut(s)	316
MvnI	CGCG	3 cut(s)	103, 581, 665
NciI	CCSGG	1 cut(s)	414
NdeII	GATC	8 cut(s)	113, 207, 373, 709, 744, 757, 820, 993
NheI	GCTAGC	1 cut(s)	1034
NlaIII	CATG	2 cut(s)	383, 1006
NlaIV	GGNNCC	2 cut(s)	193, 411
NmuCI	GTSAC	1 cut(s)	630
PagI	TCATGA	1 cut(s)	1002
PceI	AGGCCT	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	2 cut(s)	597, 677
PfeI	GAWTC	1 cut(s)	534
PinAI	ACCGGT	1 cut(s)	282
PkrI	GCNGC	9 cut(s)	269, 386, 403, 585, 802, 846, 1056, 1093, 1120
PleI	GAGTC	1 cut(s)	1146
PpsI	GAGTC	1 cut(s)	1146
PpuMI	RGGWCCY	1 cut(s)	192
PshAI	GACNNNNGTC	1 cut(s)	1137
Psp5II	RGGWCCY	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	314
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	193, 411
PspPI	GGNCC	2 cut(s)	192, 1132
PspPPI	RGGWCCY	1 cut(s)	192
PstNI	CAGNNNCTG	1 cut(s)	640
PsuI	RGATCY	2 cut(s)	373, 709
RsaI	GTAC	4 cut(s)	320, 807, 855, 923
RsaNI	GTAC	4 cut(s)	319, 806, 854, 922
SalI	GTCGAC	1 cut(s)	256
SatI	GCNGC	9 cut(s)	268, 385, 402, 584, 801, 845, 1055, 1092, 1119
Sau3AI	GATC	8 cut(s)	113, 207, 373, 709, 744, 757, 820, 993
Sau96I	GGNCC	2 cut(s)	192, 1132
ScaI	AGTACT	1 cut(s)	807
SchI	GAGTC	1 cut(s)	1147
ScrFI	CCNGG	2 cut(s)	316, 414
SduI	GDGCHC	3 cut(s)	276, 414, 838
SfaNI	GCATC	2 cut(s)	981, 1008
SinI	GGWCC	2 cut(s)	192, 1132
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
SpeI	ACTAGT	1 cut(s)	23
Sse9I	AATT	4 cut(s)	342, 455, 545, 622
SseBI	AGGCCT	1 cut(s)	720
SspMI	CTAG	8 cut(s)	24, 164, 186, 446, 506, 782, 1014, 1035
StuI	AGGCCT	1 cut(s)	720
StyD4I	CCNGG	2 cut(s)	314, 412
StyI	CCWWGG	2 cut(s)	176, 781
TaaI	ACNGT	3 cut(s)	157, 553, 636
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	2 cut(s)	257, 789
TaqII	GACCGA	2 cut(s)	783, 968
TasI	AATT	4 cut(s)	342, 455, 545, 622
TatI	WGTACW	2 cut(s)	805, 921
TauI	GCSGC	5 cut(s)	270, 404, 803, 1094, 1121
TfiI	GAWTC	1 cut(s)	534
TscAI	CASTG	2 cut(s)	148, 244
TseFI	GTSAC	1 cut(s)	630
TseI	GCWGC	4 cut(s)	384, 583, 844, 1054
Tsp45I	GTSAC	1 cut(s)	630
TspDTI	ATGAA	2 cut(s)	859, 1019
TspGWI	ACGGA	1 cut(s)	865
TspRI	CASTG	2 cut(s)	148, 244
VpaK11BI	GGWCC	2 cut(s)	192, 1132
XapI	RAATTY	3 cut(s)	455, 545, 622
XbaI	TCTAGA	1 cut(s)	505
XmaJI	CCTAGG	1 cut(s)	781
XmiI	GTMKAC	1 cut(s)	257
XspI	CTAG	8 cut(s)	24, 164, 186, 446, 506, 782, 1014, 1035
ZrmI	AGTACT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.