Rh5CG416400

N-terminal region of micro-spherule protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017842
Physical Location & Seq
Forward (+)
56635016 .. 56635436
421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG416400.1

Sequence Viewer

Length: 285 bp
ATGGCAGCGACGGCTTCGGCGCTGCTGTGGAGCCCGGAAGACGACCTCCTCCTCAAGAACGCCATCGAGGGAGGTGCTTCTCTGGAAGCGCTTGCCAGAGGAGCGGTCAGATTCTCCCGCAAATTCACCGTGGGAGATTTGCGGGAGCGGTGGCACGCGCTGCTCTACGACGCCGACGTGTCGCTTGAACTTTCCCCAAATTTTTCGTCACAGTCGCTGTTACAGCTCACTAATCTCTACGCGATTTCGTTGTCGCCGACTTGGCGCAAGTCCGAGCCACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0002151 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0004857 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005844 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006508 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0010639 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0016579 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030234 GO:0030425 GO:0031011 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032204 GO:0032205 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033202 GO:0034046 GO:0034708 GO:0035097 GO:0036211 GO:0036477 GO:0042995 GO:0043005 GO:0043025 GO:0043086 GO:0043170 GO:0043204 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0043982 GO:0043984 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044297 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044463 GO:0044464 GO:0044665 GO:0045934 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060255 GO:0060341 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070603 GO:0070646 GO:0070647 GO:0070717 GO:0071339 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0097346 GO:0097447 GO:0097458 GO:0098772 GO:0120025 GO:0120038 GO:1900180 GO:1900182 GO:1901363 GO:1901564 GO:1902493 GO:1902494 GO:1903827 GO:1903829 GO:1904356 GO:1904357 GO:1904749 GO:1904751 GO:1904949 GO:1990234 GO:1990904 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
FHA MCRS_N

Protein Analysis

94

Amino Acids

10.36

Weight (kDa)

5.24

Isoelectric Point (pI)

61.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCRS_N PF13325 10 - 61 1.5e-13 N-terminal region of micro-spherule protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 104, 148
AccII CGCG 2 cut(s) 158, 242
AciI CCGC 4 cut(s) 104, 118, 142, 148
AcsI RAATTY 2 cut(s) 122, 199
AcyI GRCGYC 1 cut(s) 171
AfeI AGCGCT 1 cut(s) 90
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 1 cut(s) 188
AjiI CACGTC 1 cut(s) 178
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
AlwNI CAGNNNCTG 1 cut(s) 217
Aor51HI AGCGCT 1 cut(s) 90
ApeKI GCWGC 3 cut(s) 5, 22, 160
ApoI RAATTY 2 cut(s) 122, 199
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
AspLEI GCGC 4 cut(s) 22, 91, 160, 267
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 118
BanII GRGCYC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 45
BbvI GCAGC 3 cut(s) 9, 17, 147
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 27
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BcnI CCSGG 1 cut(s) 35
BfoI RGCGCY 2 cut(s) 23, 92
BglI GCCNNNNNGGC 1 cut(s) 262
BisI GCNGC 3 cut(s) 6, 23, 161
BlsI GCNGC 3 cut(s) 7, 24, 162
Bme1390I CCNGG 1 cut(s) 35
BmgBI CACGTC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 35
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 129
BseRI GAGGAG 3 cut(s) 38, 41, 114
BseXI GCAGC 3 cut(s) 9, 17, 147
Bsh1236I CGCG 2 cut(s) 158, 242
BsiSI CCGG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 35
BspACI CCGC 4 cut(s) 104, 118, 142, 148
BspFNI CGCG 2 cut(s) 158, 242
BspLI GGNNCC 1 cut(s) 32
BsrBI CCGCTC 2 cut(s) 104, 148
BssECI CCNNGG 1 cut(s) 129
BssNI GRCGYC 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 130, 213
BstACI GRCGYC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 93, 156
BstDSI CCRYGG 1 cut(s) 129
BstFNI CGCG 2 cut(s) 158, 242
BstH2I RGCGCY 2 cut(s) 23, 92
BstHHI GCGC 4 cut(s) 22, 91, 160, 267
BstMWI GCNNNNNNNGC 5 cut(s) 11, 101, 160, 223, 262
BstSCI CCNGG 1 cut(s) 33
BstUI CGCG 2 cut(s) 158, 242
BstV1I GCAGC 3 cut(s) 9, 17, 147
BstV2I GAAGAC 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 129
BtrI CACGTC 1 cut(s) 178
Cac8I GCNNGC 2 cut(s) 93, 156
CaiI CAGNNNCTG 1 cut(s) 217
CfoI GCGC 4 cut(s) 22, 91, 160, 267
CseI GACGC 1 cut(s) 179
CviJI RGCY 4 cut(s) 14, 33, 226, 277
CviKI_1 RGCY 4 cut(s) 14, 33, 226, 277
Eco24I GRGCYC 1 cut(s) 35
Eco47III AGCGCT 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 35
FauI CCCGC 2 cut(s) 125, 135
Fnu4HI GCNGC 3 cut(s) 6, 23, 161
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 3 cut(s) 6, 23, 161
GlaI GCGC 4 cut(s) 21, 90, 159, 266
GluI GCNGC 3 cut(s) 6, 23, 161
HaeII RGCGCY 2 cut(s) 23, 92
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 179
HhaI GCGC 4 cut(s) 22, 91, 160, 267
Hin1I GRCGYC 1 cut(s) 171
Hin6I GCGC 4 cut(s) 20, 89, 158, 265
HinP1I GCGC 4 cut(s) 20, 89, 158, 265
HinfI GANTC 1 cut(s) 111
HpaII CCGG 1 cut(s) 35
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 3 cut(s) 110, 274, 284
Hpy188III TCNNGA 2 cut(s) 55, 83
Hpy99I CGWCG 3 cut(s) 13, 173, 179
HpyCH4III ACNGT 2 cut(s) 130, 213
HpyCH4IV ACGT 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 101, 160, 223, 262
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 171
HspAI GCGC 4 cut(s) 20, 89, 158, 265
LmnI GCTCC 3 cut(s) 30, 101, 145
LpnPI CCDG 3 cut(s) 48, 68, 109
Lsp1109I GCAGC 3 cut(s) 9, 17, 147
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 207, 219
MbiI CCGCTC 2 cut(s) 104, 148
MboII GAAGA 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 2 cut(s) 122, 199
MnlI CCTC 6 cut(s) 56, 59, 61, 62, 65, 92
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 35
MvnI CGCG 2 cut(s) 158, 242
MwoI GCNNNNNNNGC 5 cut(s) 11, 101, 160, 223, 262
NciI CCSGG 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 207
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 254
PfeI GAWTC 1 cut(s) 111
PkrI GCNGC 3 cut(s) 7, 24, 162
PspN4I GGNNCC 1 cut(s) 32
PstNI CAGNNNCTG 1 cut(s) 217
SatI GCNGC 3 cut(s) 6, 23, 161
ScrFI CCNGG 1 cut(s) 35
SduI GDGCHC 1 cut(s) 35
SetI ASST 4 cut(s) 48, 76, 180, 228
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 2 cut(s) 122, 199
SsiI CCGC 4 cut(s) 104, 118, 142, 148
StyD4I CCNGG 1 cut(s) 33
TaaI ACNGT 2 cut(s) 130, 213
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 66
TasI AATT 2 cut(s) 122, 199
TfiI GAWTC 1 cut(s) 111
TseFI GTSAC 1 cut(s) 207
TseI GCWGC 3 cut(s) 5, 22, 160
Tsp45I GTSAC 1 cut(s) 207
XapI RAATTY 2 cut(s) 122, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.