Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018775

Physical Location & Seq

Genomic Coordinates Reverse (-)

30107574 .. 30108453

Gene Structure 880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008404

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAGGAGCTTCTCAAAATGCTTGGGGAGAAACTGAATGTGAGGCAGGAGCCTAGGGATGCGAAGGTGGCGTTGCTTTCTGCAGTAGAGAGCAGTAAACAGCTTGTTGAATTGGCAGCGTCTATTAAACTACTGCTTGGTAAACCCTTGGTGCAGCGGCAAACAAGAAATGTGGAGGAGACCAGGATTTTGGTGACGAGTACAGAGATGGCGCTGGAGCGAGTTAAAGAGAATGGTGTCTTGAAAGGTTTGGCATCGCTAGTGCAACGGGCTGCTGTGGGTACAATATTACAAGAGCTGTTTGATGCGCTATATAAGATGAAGGGAAAATATTCCAAGCTAGAGTTTCTACAACCACTGATCGAAGATATGCAGGCAAAATATAGCAATGTCTTGGATCACCCAAAAGAAGGACTAGAAAATTTCAAAATGCTTGTGGAAGAGGCCTTGCGCCTCTTACGGTCCAAGCTTCTTGCAGGGATCAGCTACAAAAAGCACAAGTACGGCAACCAGCTACGTGCAATATTGGATAAATCTCTTCAGAAACTGTTGGACATATTAAAAGTGCAGGAAATGAGTAACACCAACGAGACGACCTTGGTTTCCGTCAGGAATATGGAGACAGTAGTACAAAGATTGTTGGACGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

217

Amino Acids

24.52

Weight (kDa)

9.35

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15300
rosa_laevigata	RLG00000008404 RLG00000008405 RLG00000017331
rosa_multiflora	Rmu_co8367303.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138970
rosa_samantha	Rh4AG162700 Rh4DG158400
rosa_wichuraiana	Rw4G013550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	157
AclWI	GGATC	2 cut(s)	405, 488
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	1 cut(s)	524
AfaI	GTAC	4 cut(s)	202, 283, 503, 630
AfiI	CCNNNNNNNGG	1 cut(s)	410
AgsI	TTSAA	3 cut(s)	110, 244, 427
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	7 cut(s)	10, 103, 298, 340, 469, 486, 514
AluI	AGCT	7 cut(s)	10, 103, 298, 340, 469, 486, 514
Alw26I	GTCTC	3 cut(s)	173, 584, 614
AlwI	GGATC	2 cut(s)	405, 488
AlwNI	CAGNNNCTG	1 cut(s)	547
AoxI	GGCC	1 cut(s)	444
ApeKI	GCWGC	3 cut(s)	116, 154, 272
ApoI	RAATTY	1 cut(s)	421
ArsI	GACNNNNNNTTYG	2 cut(s)	172, 204
Asp700I	GAANNNNTTC	1 cut(s)	331
AspA2I	CCTAGG	1 cut(s)	53
AspLEI	GCGC	3 cut(s)	214, 310, 453
AspS9I	GGNCC	1 cut(s)	462
AsuHPI	GGTGA	2 cut(s)	205, 392
AvaII	GGWCC	1 cut(s)	462
AvrII	CCTAGG	1 cut(s)	53
BbvI	GCAGC	3 cut(s)	128, 166, 259
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	520
BciT130I	CCWGG	1 cut(s)	184
BcoDI	GTCTC	3 cut(s)	173, 584, 614
BfaI	CTAG	4 cut(s)	54, 260, 341, 416
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	215
BisI	GCNGC	4 cut(s)	117, 155, 158, 273
BlnI	CCTAGG	1 cut(s)	53
BlsI	GCNGC	4 cut(s)	118, 156, 159, 274
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	3 cut(s)	49, 263, 295
BpmI	CTGGAG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	518
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	53, 147, 597
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse3DI	GCAATG	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	3 cut(s)	53, 147, 597
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMI	GCAATG	1 cut(s)	394
BseRI	GAGGAG	2 cut(s)	20, 191
BseXI	GCAGC	3 cut(s)	128, 166, 259
BsgI	GTGCAG	2 cut(s)	173, 587
BshFI	GGCC	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	3 cut(s)	173, 584, 614
BsmBI	CGTCTC	1 cut(s)	584
BsnI	GGCC	1 cut(s)	446
Bso31I	GGTCTC	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	360, 397, 480
BspACI	CCGC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	446
BspLI	GGNNCC	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	85
BspPI	GGATC	2 cut(s)	405, 488
BspTNI	GGTCTC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	394
BssECI	CCNNGG	3 cut(s)	53, 147, 597
BssMI	GATC	3 cut(s)	360, 397, 480
BssT1I	CCWWGG	3 cut(s)	53, 147, 597
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	3 cut(s)	462, 549, 625
Bst6I	CTCTTC	2 cut(s)	435, 543
BstBAI	YACGTR	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	64
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	3 cut(s)	214, 310, 453
BstKTI	GATC	3 cut(s)	363, 400, 483
BstMAI	GTCTC	3 cut(s)	173, 584, 614
BstMBI	GATC	3 cut(s)	360, 397, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	128, 166, 259
BstXI	CCANNNNNNTGG	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	446
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	547
CfoI	GCGC	3 cut(s)	214, 310, 453
Cfr13I	GGNCC	1 cut(s)	462
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	4 cut(s)	201, 282, 502, 629
CspCI	CAANNNNNGTGG	2 cut(s)	153, 188
CviQI	GTAC	4 cut(s)	201, 282, 502, 629
DpnI	GATC	3 cut(s)	362, 399, 482
DpnII	GATC	3 cut(s)	360, 397, 480
Eam1104I	CTCTTC	2 cut(s)	435, 543
EarI	CTCTTC	2 cut(s)	435, 543
Eco130I	CCWWGG	3 cut(s)	53, 147, 597
Eco147I	AGGCCT	1 cut(s)	446
Eco31I	GGTCTC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	182
EcoT14I	CCWWGG	3 cut(s)	53, 147, 597
ErhI	CCWWGG	3 cut(s)	53, 147, 597
Esp3I	CGTCTC	1 cut(s)	584
FaiI	YATR	7 cut(s)	313, 315, 371, 384, 557, 617, 649
Fnu4HI	GCNGC	4 cut(s)	117, 155, 158, 273
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	4 cut(s)	117, 155, 158, 273
FspBI	CTAG	4 cut(s)	54, 260, 341, 416
GlaI	GCGC	3 cut(s)	213, 309, 452
GluI	GCNGC	4 cut(s)	117, 155, 158, 273
GsuI	CTGGAG	1 cut(s)	236
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	446
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	3 cut(s)	214, 310, 453
Hin6I	GCGC	3 cut(s)	212, 308, 451
HinP1I	GCGC	3 cut(s)	212, 308, 451
HindIII	AAGCTT	1 cut(s)	467
HphI	GGTGA	2 cut(s)	205, 392
Hpy166II	GTNNAC	2 cut(s)	98, 143
Hpy188I	TCNGA	1 cut(s)	543
Hpy188III	TCNNGA	2 cut(s)	241, 610
Hpy8I	GTNNAC	2 cut(s)	98, 143
HpyAV	CCTTC	3 cut(s)	58, 316, 404
HpyCH4III	ACNGT	3 cut(s)	462, 549, 625
HpyCH4IV	ACGT	2 cut(s)	517, 645
HpyCH4V	TGCA	7 cut(s)	83, 154, 265, 373, 476, 521, 568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpySE526I	ACGT	2 cut(s)	517, 645
HspAI	GCGC	3 cut(s)	212, 308, 451
Kzo9I	GATC	3 cut(s)	360, 397, 480
LmnI	GCTCC	3 cut(s)	7, 49, 217
LpnPI	CCDG	9 cut(s)	32, 169, 196, 200, 359, 462, 524, 554, 595
Lsp1109I	GCAGC	3 cut(s)	128, 166, 259
LweI	GCATC	3 cut(s)	49, 263, 295
MaeI	CTAG	4 cut(s)	54, 260, 341, 416
MaeII	ACGT	2 cut(s)	517, 645
MaeIII	GTNAC	2 cut(s)	193, 578
MalI	GATC	3 cut(s)	362, 399, 482
MboI	GATC	3 cut(s)	360, 397, 480
MboII	GAAGA	3 cut(s)	377, 452, 530
MluCI	AATT	2 cut(s)	110, 421
MmeI	TCCRAC	2 cut(s)	531, 621
MnlI	CCTC	4 cut(s)	36, 169, 436, 464
MroXI	GAANNNNTTC	1 cut(s)	331
MseI	TTAA	3 cut(s)	126, 225, 560
MspA1I	CMGCKG	1 cut(s)	157
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	3 cut(s)	360, 397, 480
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	331
PkrI	GCNGC	4 cut(s)	118, 156, 159, 274
Ppu21I	YACGTR	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	85
PstNI	CAGNNNCTG	1 cut(s)	547
RsaI	GTAC	4 cut(s)	202, 283, 503, 630
RsaNI	GTAC	4 cut(s)	201, 282, 502, 629
SaqAI	TTAA	3 cut(s)	126, 225, 560
SatI	GCNGC	4 cut(s)	117, 155, 158, 273
Sau3AI	GATC	3 cut(s)	360, 397, 480
Sau96I	GGNCC	1 cut(s)	462
ScrFI	CCNGG	1 cut(s)	184
SfaNI	GCATC	3 cut(s)	49, 263, 295
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	462
Sse9I	AATT	2 cut(s)	110, 421
SseBI	AGGCCT	1 cut(s)	446
SsiI	CCGC	1 cut(s)	157
SspI	AATATT	3 cut(s)	288, 332, 525
SspMI	CTAG	4 cut(s)	54, 260, 341, 416
StuI	AGGCCT	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	3 cut(s)	53, 147, 597
TaaI	ACNGT	3 cut(s)	462, 549, 625
TaiI	ACGT	2 cut(s)	520, 648
TaqI	TCGA	1 cut(s)	363
TasI	AATT	2 cut(s)	110, 421
TatI	WGTACW	2 cut(s)	200, 628
TauI	GCSGC	1 cut(s)	160
Tru1I	TTAA	3 cut(s)	126, 225, 560
Tru9I	TTAA	3 cut(s)	126, 225, 560
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	3 cut(s)	116, 154, 272
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	595
TspRI	CASTG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	462
XapI	RAATTY	1 cut(s)	421
XmaJI	CCTAGG	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	4 cut(s)	54, 260, 341, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.