Rmu_co8367303.1_g000001

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8367303.1
OG0018775
Physical Location & Seq
Forward (+)
447 .. 1107
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8367303.1_g000001.1.cds

Sequence Viewer

Length: 661 bp
atggcaatgggtggggagcttgttgcaggtgctgttttaggaacactgttcgccgagctgtacaaggggttcaaggaaataagaggcgagactaagcgctttagaggccagctagagaatctcaattgcacccttgactctctgaaacctctgatcttccagataggtgagctgaacttgaaactggatctcccaacttcggaaattgaagatctcatgagagagatggagaagggcgcagagctggtaggcagactgagccagattcggaagagggagtacttgttagtcaagcgacgttatagcaaccagcttgttaaactgcatcaatcgcttaagatactgttggatagactcaagtttcaggaagcaagggatgtgaaggagatctatctcgagatgagaaaacaaacggcaaaactagtccaaatggaggagcttctcaaaatgcttgggaagaaactgaatgtgaggcaggagcctagggatgcgaaggtggcgttgctttctgcagtagagagcagtaaacagcttgttgaattggcagcgtctattaaactactgcttggtaaacccttgttgcagcggcaagcaagaaatgtggaggagaccaggattttggtgacgagtacagagatggcgctggagcgagttaaagaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

220

Amino Acids

25.26

Weight (kDa)

9.58

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018775)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15300
rosa_laevigata RLG00000008404 RLG00000008405 RLG00000017331
rosa_multiflora Rmu_co8367303.1_g000001
rosa_roxburghii Rroxscaffold_2G00138970
rosa_samantha Rh4AG162700 Rh4DG158400
rosa_wichuraiana Rw4G013550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 17
AciI CCGC 1 cut(s) 586
AclWI GGATC 1 cut(s) 195
AfaI GTAC 3 cut(s) 62, 281, 631
AfeI AGCGCT 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 199, 433
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 4 cut(s) 73, 181, 209, 539
AhlI ACTAGT 1 cut(s) 421
AjnI CCWGG 1 cut(s) 611
AluBI AGCT 8 cut(s) 19, 58, 112, 172, 244, 313, 439, 532
AluI AGCT 8 cut(s) 19, 58, 112, 172, 244, 313, 439, 532
Alw26I GTCTC 2 cut(s) 83, 602
AlwI GGATC 1 cut(s) 195
AlwNI CAGNNNCTG 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 395
Aor51HI AGCGCT 1 cut(s) 98
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 545, 583
ArsI GACNNNNNNTTYG 2 cut(s) 601, 633
AspA2I CCTAGG 1 cut(s) 482
AspLEI GCGC 3 cut(s) 99, 239, 643
AsuHPI GGTGA 2 cut(s) 179, 634
AvaI CYCGRG 1 cut(s) 395
AvrII CCTAGG 1 cut(s) 482
BarI GAAGNNNNNNTAC 2 cut(s) 263, 295
BbvI GCAGC 2 cut(s) 557, 595
BccI CCATC 2 cut(s) 220, 631
BceAI ACGGC 1 cut(s) 429
BciT130I CCWGG 1 cut(s) 613
BcoDI GTCTC 2 cut(s) 83, 602
BcuI ACTAGT 1 cut(s) 421
BfaI CTAG 3 cut(s) 113, 422, 483
BfmI CTRYAG 1 cut(s) 510
BfoI RGCGCY 2 cut(s) 100, 644
BfrI CTTAAG 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 17
BglII AGATCT 2 cut(s) 211, 387
BisI GCNGC 3 cut(s) 546, 584, 587
BlnI CCTAGG 1 cut(s) 482
BlsI GCNGC 3 cut(s) 547, 585, 588
BmcAI AGTACT 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 613
BmeT110I CYCGRG 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 480
BmrFI CCNGG 1 cut(s) 613
BmsI GCATC 2 cut(s) 334, 478
BpuEI CTTGAG 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 1 cut(s) 482
BsaXI ACNNNNNCTCC 4 cut(s) 174, 204, 269, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 433
Bse1I ACTGG 1 cut(s) 189
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 613
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 2 cut(s) 382, 493
BseLI CCNNNNNNNGG 2 cut(s) 199, 433
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 189
BseRI GAGGAG 2 cut(s) 449, 620
BseXI GCAGC 2 cut(s) 557, 595
BshFI GGCC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 199, 433
BsmAI GTCTC 2 cut(s) 83, 602
BsnI GGCC 1 cut(s) 108
Bso31I GGTCTC 1 cut(s) 602
BsoBI CYCGRG 1 cut(s) 395
Bsp1407I TGTACA 1 cut(s) 60
Bsp143I GATC 4 cut(s) 153, 187, 211, 387
BspACI CCGC 1 cut(s) 586
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 249
BspHI TCATGA 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 480
BspMAI CTGCAG 1 cut(s) 514
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 1 cut(s) 195
BspTI CTTAAG 1 cut(s) 335
BspTNI GGTCTC 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 12
BsrGI TGTACA 1 cut(s) 60
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 4 cut(s) 153, 187, 211, 387
BssT1I CCWWGG 1 cut(s) 482
Bst2UI CCWGG 1 cut(s) 613
Bst4CI ACNGT 2 cut(s) 48, 345
Bst6I CTCTTC 1 cut(s) 266
BstAFI CTTAAG 1 cut(s) 335
BstAUI TGTACA 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 110, 591
BstDEI CTNAG 2 cut(s) 93, 257
BstF5I GGATG 2 cut(s) 382, 493
BstH2I RGCGCY 2 cut(s) 100, 644
BstHHI GCGC 3 cut(s) 99, 239, 643
BstKTI GATC 4 cut(s) 156, 190, 214, 390
BstMAI GTCTC 2 cut(s) 83, 602
BstMBI GATC 4 cut(s) 153, 187, 211, 387
BstMWI GCNNNNNNNGC 4 cut(s) 105, 258, 331, 497
BstNI CCWGG 1 cut(s) 613
BstSCI CCNGG 1 cut(s) 611
BstSFI CTRYAG 1 cut(s) 510
BstV1I GCAGC 2 cut(s) 557, 595
BstX2I RGATCY 3 cut(s) 187, 211, 387
BstXI CCANNNNNNTGG 1 cut(s) 619
BstYI RGATCY 3 cut(s) 187, 211, 387
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 2 cut(s) 382, 493
BtsIMutI CAGTG 1 cut(s) 44
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 2 cut(s) 110, 591
CaiI CAGNNNCTG 1 cut(s) 32
CciI TCATGA 1 cut(s) 216
CfoI GCGC 3 cut(s) 99, 239, 643
CseI GACGC 1 cut(s) 537
Csp6I GTAC 3 cut(s) 61, 280, 630
CspCI CAANNNNNGTGG 2 cut(s) 582, 617
CviAII CATG 1 cut(s) 217
CviQI GTAC 3 cut(s) 61, 280, 630
DdeI CTNAG 2 cut(s) 93, 257
DpnI GATC 4 cut(s) 155, 189, 213, 389
DpnII GATC 4 cut(s) 153, 187, 211, 387
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 482
Eco31I GGTCTC 1 cut(s) 602
Eco47III AGCGCT 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 611
EcoT14I CCWWGG 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 1 cut(s) 220
FaiI YATR 2 cut(s) 218, 303
FatI CATG 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 546, 584, 587
FokI GGATG 2 cut(s) 389, 500
Fsp4HI GCNGC 3 cut(s) 546, 584, 587
FspBI CTAG 3 cut(s) 113, 422, 483
GlaI GCGC 3 cut(s) 98, 238, 642
GluI GCNGC 3 cut(s) 546, 584, 587
HaeII RGCGCY 2 cut(s) 100, 644
HaeIII GGCC 1 cut(s) 108
HgaI GACGC 1 cut(s) 537
HhaI GCGC 3 cut(s) 99, 239, 643
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 3 cut(s) 97, 237, 641
HinP1I GCGC 3 cut(s) 97, 237, 641
HinfI GANTC 4 cut(s) 118, 137, 265, 354
HphI GGTGA 2 cut(s) 179, 634
Hpy166II GTNNAC 2 cut(s) 527, 572
Hpy188I TCNGA 4 cut(s) 144, 153, 202, 270
Hpy188III TCNNGA 5 cut(s) 160, 217, 365, 395, 397
Hpy8I GTNNAC 2 cut(s) 527, 572
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 3 cut(s) 226, 376, 487
HpyCH4III ACNGT 2 cut(s) 48, 345
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 5 cut(s) 26, 129, 325, 512, 583
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 258, 331, 497
HpyF3I CTNAG 2 cut(s) 93, 257
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 3 cut(s) 97, 237, 641
Kzo9I GATC 4 cut(s) 153, 187, 211, 387
LmnI GCTCC 4 cut(s) 16, 436, 478, 646
Lsp1109I GCAGC 2 cut(s) 557, 595
LweI GCATC 2 cut(s) 334, 478
MaeI CTAG 3 cut(s) 113, 422, 483
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 622
MalI GATC 4 cut(s) 155, 189, 213, 389
MboI GATC 4 cut(s) 153, 187, 211, 387
MboII GAAGA 4 cut(s) 148, 221, 283, 469
MfeI CAATTG 1 cut(s) 124
MflI RGATCY 3 cut(s) 187, 211, 387
MluCI AATT 3 cut(s) 124, 204, 539
MlyI GAGTC 2 cut(s) 131, 348
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 7 cut(s) 77, 98, 159, 267, 427, 465, 598
MseI TTAA 4 cut(s) 318, 336, 555, 654
MspA1I CMGCKG 1 cut(s) 586
MspCI CTTAAG 1 cut(s) 335
MspR9I CCNGG 1 cut(s) 613
MunI CAATTG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 613
MwoI GCNNNNNNNGC 4 cut(s) 105, 258, 331, 497
NdeII GATC 4 cut(s) 153, 187, 211, 387
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 1 cut(s) 480
NmeAIII GCCGAG 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 622
PaeR7I CTCGAG 1 cut(s) 395
PagI TCATGA 1 cut(s) 216
PaqCI CACCTGC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 118, 265
PkrI GCNGC 3 cut(s) 547, 585, 588
PleI GAGTC 2 cut(s) 131, 348
PpsI GAGTC 2 cut(s) 131, 348
Psp6I CCWGG 1 cut(s) 611
PspGI CCWGG 1 cut(s) 611
PspN4I GGNNCC 1 cut(s) 480
PsrI GAACNNNNNNTAC 2 cut(s) 53, 85
PstI CTGCAG 1 cut(s) 514
PstNI CAGNNNCTG 1 cut(s) 32
PsuI RGATCY 3 cut(s) 187, 211, 387
RsaI GTAC 3 cut(s) 62, 281, 631
RsaNI GTAC 3 cut(s) 61, 280, 630
SaqAI TTAA 4 cut(s) 318, 336, 555, 654
SatI GCNGC 3 cut(s) 546, 584, 587
Sau3AI GATC 4 cut(s) 153, 187, 211, 387
ScaI AGTACT 1 cut(s) 281
SchI GAGTC 2 cut(s) 131, 348
ScrFI CCNGG 1 cut(s) 613
SfaNI GCATC 2 cut(s) 334, 478
SfcI CTRYAG 1 cut(s) 510
Sfr274I CTCGAG 1 cut(s) 395
SlaI CTCGAG 1 cut(s) 395
SmlI CTYRAG 3 cut(s) 335, 356, 395
SmoI CTYRAG 3 cut(s) 335, 356, 395
SpeI ACTAGT 1 cut(s) 421
Sse9I AATT 3 cut(s) 124, 204, 539
SsiI CCGC 1 cut(s) 586
SspMI CTAG 3 cut(s) 113, 422, 483
StyD4I CCNGG 1 cut(s) 611
StyI CCWWGG 1 cut(s) 482
TaaI ACNGT 2 cut(s) 48, 345
TaiI ACGT 1 cut(s) 301
TaqI TCGA 1 cut(s) 396
TasI AATT 3 cut(s) 124, 204, 539
TatI WGTACW 3 cut(s) 60, 279, 629
TauI GCSGC 1 cut(s) 589
TfiI GAWTC 2 cut(s) 118, 265
Tru1I TTAA 4 cut(s) 318, 336, 555, 654
Tru9I TTAA 4 cut(s) 318, 336, 555, 654
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 2 cut(s) 545, 583
Tsp45I GTSAC 1 cut(s) 622
TspRI CASTG 1 cut(s) 51
Vha464I CTTAAG 1 cut(s) 335
XhoI CTCGAG 1 cut(s) 395
XmaJI CCTAGG 1 cut(s) 482
XspI CTAG 3 cut(s) 113, 422, 483
ZrmI AGTACT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.