Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0018775

Physical Location & Seq

Genomic Coordinates Forward (+)

41228658 .. 41230304

Gene Structure 1647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG162700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCAATGGTGGGGGATCTTGTTGCAGGTGCTGTTTTAGGAACACTGTTCGCTGAGCTGTACAAGGGGTTCAAGGAAATAAGAGGCGAGACTAAGCGCTTTAGAGGCCACCTAGAGAATCTCAATTGCACCCTTGACTCTCTGAAACCTCTGATCTTCCAGATAGGTGAGCTGAACTTGAAACTGGATCTCCCAACTTCGGAAATTGAAGATCTCATGAGAGAGATGGGGAAGGGCGCAGAGCTGGTAGGTAGACTGAGCCAGATTCGAAAGAGGGAGTACTTGTTAGTCAAGCGACGTTATAGCAACCAGCTTGTTAAACTGGATCAATCGCTTAAGATACTGTTGGATAGACTCAAGTTTCAGGAAGCAAGGGATGTGAAGGAGATCTATCTCGAGATGAGAAAACAAACGGCAAAACTAGTCGAAATGGAGGAGCTTCTCAAAATGCTTGGGGAGAAACTGAATGTGAGGCAGGAGCCTAGGGATGCGAAGGTGGCGTTGCTTTCTGCAGTAGAGAGCAGTAAACAGCTTGTTGAATTGGCAGCGTCTATTAAACTACTGCTTGGTAAACCCTTGTTGCAGCGGCAAGCAAGAAATGTGGAGGAGACCAGGATTTTGGTGACGAGTACAGAGATGGCGCTGGAGCGAGTTAAAGAGAATGGTGTCTTGAAAGGTTTGGCATCGCTAGTGCAACGGGCTGCTGTGGGTACAATATTACAAGAGCTGTTTGATGCGCTATATAAGATGAAGGGAAGATATTCCAAGCTAGAGTTTCTACAACCACTGATCGAAGATATGCAGGCAAAATATAACAATGTCTTGGATCACCCAAAAGAAGGACTAGAAAATTTCAAAATGCTTGTGGAAACCTTGCGCCTCTTACGGTCCAATCTTCGTGCAGGGAACAGCTACAAAAAGCACAAGTACGGCAACCAGCTACGTGCAATATTGGATAAATCTCTTCAGAAACTGTTGGACATATTAAAAGTGCAGGAAATGAGTAACACCAACGAGACGACCTTGGTTTCAGTCAGGAATATGGAGACAGTAGTACAAAGATTGTTGGACGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

358

Amino Acids

41.01

Weight (kDa)

9.49

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 141	1.7e-25	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15300
rosa_laevigata	RLG00000008404 RLG00000008405 RLG00000017331
rosa_multiflora	Rmu_co8367303.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138970
rosa_samantha	Rh4AG162700 Rh4DG158400
rosa_wichuraiana	Rw4G013550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	17
AccI	GTMKAC	1 cut(s)	253
AciI	CCGC	1 cut(s)	586
AclWI	GGATC	4 cut(s)	24, 195, 333, 834
AcsI	RAATTY	1 cut(s)	850
AcuI	CTGAAG	1 cut(s)	950
AfaI	GTAC	6 cut(s)	62, 281, 631, 712, 929, 1056
AfeI	AGCGCT	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	199, 839
AflII	CTTAAG	1 cut(s)	335
AgsI	TTSAA	6 cut(s)	73, 181, 209, 539, 673, 856
AhlI	ACTAGT	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	611
Alw26I	GTCTC	4 cut(s)	83, 602, 1010, 1040
AlwI	GGATC	4 cut(s)	24, 195, 333, 834
AlwNI	CAGNNNCTG	2 cut(s)	32, 973
Ama87I	CYCGRG	1 cut(s)	395
Aor51HI	AGCGCT	1 cut(s)	98
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	3 cut(s)	545, 583, 701
ApoI	RAATTY	1 cut(s)	850
ArsI	GACNNNNNNTTYG	2 cut(s)	601, 633
Asp700I	GAANNNNTTC	1 cut(s)	760
AspA2I	CCTAGG	1 cut(s)	482
AspLEI	GCGC	5 cut(s)	99, 239, 643, 739, 879
AspS9I	GGNCC	1 cut(s)	888
AsuHPI	GGTGA	3 cut(s)	179, 634, 821
AsuII	TTCGAA	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	888
AvrII	CCTAGG	1 cut(s)	482
BbvI	GCAGC	3 cut(s)	557, 595, 688
BccI	CCATC	2 cut(s)	220, 631
BceAI	ACGGC	2 cut(s)	429, 946
BciT130I	CCWGG	1 cut(s)	613
BcoDI	GTCTC	4 cut(s)	83, 602, 1010, 1040
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	6 cut(s)	113, 422, 483, 689, 770, 845
BfmI	CTRYAG	1 cut(s)	510
BfoI	RGCGCY	2 cut(s)	100, 644
BfrI	CTTAAG	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	17
BglII	AGATCT	2 cut(s)	211, 387
BisI	GCNGC	4 cut(s)	546, 584, 587, 702
BlnI	CCTAGG	1 cut(s)	482
BlpI	GCTNAGC	1 cut(s)	54
BlsI	GCNGC	4 cut(s)	547, 585, 588, 703
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	1 cut(s)	613
Bme18I	GGWCC	1 cut(s)	888
BmeT110I	CYCGRG	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	888
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	613
BmsI	GCATC	3 cut(s)	478, 692, 724
BpmI	CTGGAG	1 cut(s)	665
Bpu1102I	GCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	268
BpuEI	CTTGAG	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	944
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	2 cut(s)	482, 1023
BsaXI	ACNNNNNCTCC	4 cut(s)	174, 204, 269, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 839
Bse1I	ACTGG	2 cut(s)	189, 327
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	613
BseDI	CCNNGG	2 cut(s)	482, 1023
BseGI	GGATG	2 cut(s)	382, 493
BseLI	CCNNNNNNNGG	2 cut(s)	199, 839
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	45, 248
BseNI	ACTGG	2 cut(s)	189, 327
BseRI	GAGGAG	2 cut(s)	449, 620
BseXI	GCAGC	3 cut(s)	557, 595, 688
BsgI	GTGCAG	2 cut(s)	921, 1013
BshFI	GGCC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	199, 839
BsmAI	GTCTC	4 cut(s)	83, 602, 1010, 1040
BsmBI	CGTCTC	1 cut(s)	1010
BsnI	GGCC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	602
BsoBI	CYCGRG	1 cut(s)	395
Bsp119I	TTCGAA	1 cut(s)	268
Bsp1407I	TGTACA	1 cut(s)	60
Bsp143I	GATC	8 cut(s)	16, 153, 187, 211, 325, 387, 789, 826
Bsp1720I	GCTNAGC	1 cut(s)	54
BspACI	CCGC	1 cut(s)	586
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	2 cut(s)	46, 249
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	480
BspMAI	CTGCAG	1 cut(s)	514
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	4 cut(s)	24, 195, 333, 834
BspT104I	TTCGAA	1 cut(s)	268
BspTI	CTTAAG	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	12
BsrGI	TGTACA	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	189, 327
BssECI	CCNNGG	2 cut(s)	482, 1023
BssMI	GATC	8 cut(s)	16, 153, 187, 211, 325, 387, 789, 826
BssT1I	CCWWGG	2 cut(s)	482, 1023
Bst2UI	CCWGG	1 cut(s)	613
Bst4CI	ACNGT	5 cut(s)	48, 345, 888, 975, 1051
Bst6I	CTCTTC	1 cut(s)	969
BstAFI	CTTAAG	1 cut(s)	335
BstAUI	TGTACA	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	944
BstBI	TTCGAA	1 cut(s)	268
BstC8I	GCNNGC	2 cut(s)	591, 804
BstDEI	CTNAG	3 cut(s)	54, 93, 257
BstF5I	GGATG	2 cut(s)	382, 493
BstH2I	RGCGCY	2 cut(s)	100, 644
BstHHI	GCGC	5 cut(s)	99, 239, 643, 739, 879
BstKTI	GATC	8 cut(s)	19, 156, 190, 214, 328, 390, 792, 829
BstMAI	GTCTC	4 cut(s)	83, 602, 1010, 1040
BstMBI	GATC	8 cut(s)	16, 153, 187, 211, 325, 387, 789, 826
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 497
BstNI	CCWGG	1 cut(s)	613
BstSCI	CCNGG	1 cut(s)	611
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	3 cut(s)	557, 595, 688
BstX2I	RGATCY	4 cut(s)	16, 187, 211, 387
BstXI	CCANNNNNNTGG	1 cut(s)	619
BstYI	RGATCY	4 cut(s)	16, 187, 211, 387
BsuRI	GGCC	1 cut(s)	108
BtgZI	GCGATG	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	382, 493
BtsIMutI	CAGTG	2 cut(s)	44, 785
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	591, 804
CaiI	CAGNNNCTG	2 cut(s)	32, 973
CciI	TCATGA	1 cut(s)	216
CfoI	GCGC	5 cut(s)	99, 239, 643, 739, 879
Cfr13I	GGNCC	1 cut(s)	888
CseI	GACGC	1 cut(s)	537
Csp6I	GTAC	6 cut(s)	61, 280, 630, 711, 928, 1055
CspCI	CAANNNNNGTGG	2 cut(s)	582, 617
CviAII	CATG	1 cut(s)	217
CviQI	GTAC	6 cut(s)	61, 280, 630, 711, 928, 1055
DdeI	CTNAG	3 cut(s)	54, 93, 257
DpnI	GATC	8 cut(s)	18, 155, 189, 213, 327, 389, 791, 828
DpnII	GATC	8 cut(s)	16, 153, 187, 211, 325, 387, 789, 826
Eam1104I	CTCTTC	1 cut(s)	969
EarI	CTCTTC	1 cut(s)	969
Eco130I	CCWWGG	2 cut(s)	482, 1023
Eco31I	GGTCTC	1 cut(s)	602
Eco47I	GGWCC	1 cut(s)	888
Eco47III	AGCGCT	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	950
Eco88I	CYCGRG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	611
EcoT14I	CCWWGG	2 cut(s)	482, 1023
ErhI	CCWWGG	2 cut(s)	482, 1023
Esp3I	CGTCTC	1 cut(s)	1010
FaeI	CATG	1 cut(s)	220
FaiI	YATR	9 cut(s)	218, 303, 742, 744, 800, 813, 983, 1043, 1075
FatI	CATG	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	253
Fnu4HI	GCNGC	4 cut(s)	546, 584, 587, 702
FokI	GGATG	2 cut(s)	389, 500
Fsp4HI	GCNGC	4 cut(s)	546, 584, 587, 702
FspBI	CTAG	6 cut(s)	113, 422, 483, 689, 770, 845
GlaI	GCGC	5 cut(s)	98, 238, 642, 738, 878
GluI	GCNGC	4 cut(s)	546, 584, 587, 702
GsuI	CTGGAG	1 cut(s)	665
HaeII	RGCGCY	2 cut(s)	100, 644
HaeIII	GGCC	1 cut(s)	108
HgaI	GACGC	1 cut(s)	537
HhaI	GCGC	5 cut(s)	99, 239, 643, 739, 879
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	5 cut(s)	97, 237, 641, 737, 877
HinP1I	GCGC	5 cut(s)	97, 237, 641, 737, 877
HinfI	GANTC	4 cut(s)	118, 137, 265, 354
HphI	GGTGA	3 cut(s)	179, 634, 821
Hpy166II	GTNNAC	3 cut(s)	254, 527, 572
Hpy188I	TCNGA	4 cut(s)	144, 153, 202, 969
Hpy188III	TCNNGA	7 cut(s)	160, 217, 365, 395, 397, 670, 1036
Hpy8I	GTNNAC	3 cut(s)	254, 527, 572
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	5 cut(s)	226, 376, 487, 745, 833
HpyCH4III	ACNGT	5 cut(s)	48, 345, 888, 975, 1051
HpyCH4IV	ACGT	3 cut(s)	298, 943, 1071
HpyCH4V	TGCA	9 cut(s)	26, 129, 512, 583, 694, 802, 902, 947, 994
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 497
HpyF3I	CTNAG	3 cut(s)	54, 93, 257
HpySE526I	ACGT	3 cut(s)	298, 943, 1071
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	5 cut(s)	97, 237, 641, 737, 877
Kzo9I	GATC	8 cut(s)	16, 153, 187, 211, 325, 387, 789, 826
LmnI	GCTCC	3 cut(s)	436, 478, 646
Lsp1109I	GCAGC	3 cut(s)	557, 595, 688
LweI	GCATC	3 cut(s)	478, 692, 724
MaeI	CTAG	6 cut(s)	113, 422, 483, 689, 770, 845
MaeII	ACGT	3 cut(s)	298, 943, 1071
MaeIII	GTNAC	2 cut(s)	622, 1004
MalI	GATC	8 cut(s)	18, 155, 189, 213, 327, 389, 791, 828
MboI	GATC	8 cut(s)	16, 153, 187, 211, 325, 387, 789, 826
MboII	GAAGA	6 cut(s)	148, 221, 768, 806, 887, 956
MfeI	CAATTG	1 cut(s)	124
MflI	RGATCY	4 cut(s)	16, 187, 211, 387
MluCI	AATT	4 cut(s)	124, 204, 539, 850
MlyI	GAGTC	2 cut(s)	131, 348
MmeI	TCCRAC	3 cut(s)	327, 957, 1047
MnlI	CCTC	8 cut(s)	77, 98, 159, 267, 427, 465, 598, 890
MroXI	GAANNNNTTC	1 cut(s)	760
MseI	TTAA	5 cut(s)	318, 336, 555, 654, 986
MspA1I	CMGCKG	1 cut(s)	586
MspCI	CTTAAG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	613
MunI	CAATTG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	613
MwoI	GCNNNNNNNGC	2 cut(s)	105, 497
NdeII	GATC	8 cut(s)	16, 153, 187, 211, 325, 387, 789, 826
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	622
NspV	TTCGAA	1 cut(s)	268
PaeR7I	CTCGAG	1 cut(s)	395
PagI	TCATGA	1 cut(s)	216
PaqCI	CACCTGC	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	760
PfeI	GAWTC	2 cut(s)	118, 265
PkrI	GCNGC	4 cut(s)	547, 585, 588, 703
PleI	GAGTC	2 cut(s)	131, 348
PpsI	GAGTC	2 cut(s)	131, 348
Ppu21I	YACGTR	1 cut(s)	944
Psp6I	CCWGG	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	611
PspN4I	GGNNCC	1 cut(s)	480
PspPI	GGNCC	1 cut(s)	888
PsrI	GAACNNNNNNTAC	2 cut(s)	53, 85
PstI	CTGCAG	1 cut(s)	514
PstNI	CAGNNNCTG	2 cut(s)	32, 973
PsuI	RGATCY	4 cut(s)	16, 187, 211, 387
RsaI	GTAC	6 cut(s)	62, 281, 631, 712, 929, 1056
RsaNI	GTAC	6 cut(s)	61, 280, 630, 711, 928, 1055
SaqAI	TTAA	5 cut(s)	318, 336, 555, 654, 986
SatI	GCNGC	4 cut(s)	546, 584, 587, 702
Sau3AI	GATC	8 cut(s)	16, 153, 187, 211, 325, 387, 789, 826
Sau96I	GGNCC	1 cut(s)	888
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	2 cut(s)	131, 348
ScrFI	CCNGG	1 cut(s)	613
SfaNI	GCATC	3 cut(s)	478, 692, 724
SfcI	CTRYAG	1 cut(s)	510
Sfr274I	CTCGAG	1 cut(s)	395
SfuI	TTCGAA	1 cut(s)	268
SinI	GGWCC	1 cut(s)	888
SlaI	CTCGAG	1 cut(s)	395
SmlI	CTYRAG	3 cut(s)	335, 356, 395
SmoI	CTYRAG	3 cut(s)	335, 356, 395
SpeI	ACTAGT	1 cut(s)	421
Sse9I	AATT	4 cut(s)	124, 204, 539, 850
SsiI	CCGC	1 cut(s)	586
SspI	AATATT	2 cut(s)	717, 951
SspMI	CTAG	6 cut(s)	113, 422, 483, 689, 770, 845
StyD4I	CCNGG	1 cut(s)	611
StyI	CCWWGG	2 cut(s)	482, 1023
TaaI	ACNGT	5 cut(s)	48, 345, 888, 975, 1051
TaiI	ACGT	3 cut(s)	301, 946, 1074
TaqI	TCGA	4 cut(s)	268, 396, 426, 792
TasI	AATT	4 cut(s)	124, 204, 539, 850
TatI	WGTACW	4 cut(s)	60, 279, 629, 1054
TauI	GCSGC	1 cut(s)	589
TfiI	GAWTC	2 cut(s)	118, 265
Tru1I	TTAA	5 cut(s)	318, 336, 555, 654, 986
Tru9I	TTAA	5 cut(s)	318, 336, 555, 654, 986
TscAI	CASTG	2 cut(s)	51, 792
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	3 cut(s)	545, 583, 701
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	1 cut(s)	764
TspRI	CASTG	2 cut(s)	51, 792
Vha464I	CTTAAG	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	888
XapI	RAATTY	1 cut(s)	850
XhoI	CTCGAG	1 cut(s)	395
XmaJI	CCTAGG	1 cut(s)	482
XmiI	GTMKAC	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	760
XspI	CTAG	6 cut(s)	113, 422, 483, 689, 770, 845
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.