RLG00000009048

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016020
Physical Location & Seq
Forward (+)
45582765 .. 45583310
546 bp
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UTR
Exon/CDS
Intron
RLM00000009048

Sequence Viewer

Length: 417 bp
ATGAAGTTTCACATGGAGAACACAGAAGCCTTCCTGAGGCTCTCTTCAGTTATCCTCTTGGTCCTCACTGCGTTGCTAGTAGGACTTGATCACCAGACCAAATTTGTCATCTTCGCTTACAGAAAAGCTTCTTTCGACGAGGTCAATGCCCTCCTGGTTCTGGTTTATGTTGATGCTGTGGTTGCTGGATACAATCTGGTTCGACTGTTTGGCAAGTTTTCAATGTCAGCTGGTTTAGTCAAACAAAATCCACAAGGGTCCAGCGTATACCTAGCTTGGTTTTCTCTATTGCTCGATCAGGTATTACACTTCGTCACTTCCCTGGCTCTAACTCTGTTTACTCTTAGCCATAATACCCCTGAGGGCTTCTTTCATACAGTTACCGGACGGTTGACAATTCCGGTTAATCGCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

139

Amino Acids

15.42

Weight (kDa)

9.1

Isoelectric Point (pI)

17.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 7 - 106 2.9e-14 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25830
fragaria_vesca FvH4_4g09300
malus_domestica MD13G1269300.v1.1
prunus_persica Prupe.1G088100_v2.0.a1
pyrus_communis pycom13g22330
rosa_chinensis RchiOBHm_Chr4g0402761
rosa_laevigata RLG00000009048
rosa_multiflora Rmu_sc0002451.1_g000031
rosa_roxburghii Rroxscaffold_5G00347520
rosa_rugosa Rorug04G0038600
rosa_samantha Rh4AG116000 Rh4BG108600 Rh4CG123300 Rh4DG108800
rosa_wichuraiana Rw4G009280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 267
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 30
AfiI CCNNNNNNNGG 2 cut(s) 36, 160
AgsI TTSAA 1 cut(s) 222
AjnI CCWGG 2 cut(s) 153, 321
AluBI AGCT 3 cut(s) 128, 230, 275
AluI AGCT 3 cut(s) 128, 230, 275
ApoI RAATTY 1 cut(s) 101
Asp700I GAANNNNTTC 1 cut(s) 127
AspS9I GGNCC 2 cut(s) 61, 258
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 2 cut(s) 61, 258
AxyI CCTNAGG 2 cut(s) 35, 360
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BciT130I CCWGG 2 cut(s) 155, 323
BciVI GTATCC 1 cut(s) 182
BclI TGATCA 1 cut(s) 88
BfaI CTAG 2 cut(s) 77, 272
BfuI GTATCC 1 cut(s) 182
Bme1390I CCNGG 2 cut(s) 155, 323
Bme18I GGWCC 2 cut(s) 61, 258
BmgT120I GGNCC 2 cut(s) 61, 258
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 2 cut(s) 155, 323
BmsI GCATC 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 321
BsaWI WCCGGW 2 cut(s) 383, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 160
Bse21I CCTNAGG 2 cut(s) 35, 360
BseBI CCWGG 2 cut(s) 155, 323
BseDI CCNNGG 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 36, 160
BseMII CTCAG 2 cut(s) 26, 351
BsiSI CCGG 2 cut(s) 384, 401
BslI CCNNNNNNNGG 2 cut(s) 36, 160
Bsp143I GATC 2 cut(s) 88, 295
BspCNI CTCAG 2 cut(s) 27, 352
BspLI GGNNCC 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 2 cut(s) 88, 295
BssNAI GTATAC 1 cut(s) 268
Bst1107I GTATAC 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 155, 323
Bst4CI ACNGT 3 cut(s) 207, 379, 390
Bst6I CTCTTC 1 cut(s) 49
BstDEI CTNAG 3 cut(s) 35, 344, 360
BstENI CCTNNNNNAGG 1 cut(s) 34
BstKTI GATC 2 cut(s) 91, 298
BstMBI GATC 2 cut(s) 88, 295
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 2 cut(s) 155, 323
BstSCI CCNGG 2 cut(s) 153, 321
BstZ17I GTATAC 1 cut(s) 268
Bsu36I CCTNAGG 2 cut(s) 35, 360
BsuI GTATCC 1 cut(s) 182
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cfr13I GGNCC 2 cut(s) 61, 258
CviAII CATG 1 cut(s) 13
CviJI RGCY 8 cut(s) 29, 40, 128, 230, 275, 326, 348, 366
CviKI_1 RGCY 8 cut(s) 29, 40, 128, 230, 275, 326, 348, 366
DdeI CTNAG 3 cut(s) 35, 344, 360
DpnI GATC 2 cut(s) 90, 297
DpnII GATC 2 cut(s) 88, 295
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 61, 258
Eco57I CTGAAG 1 cut(s) 30
Eco81I CCTNAGG 2 cut(s) 35, 360
EcoNI CCTNNNNNAGG 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 153, 321
FaeI CATG 1 cut(s) 16
FaiI YATR 5 cut(s) 14, 168, 268, 351, 375
FatI CATG 1 cut(s) 12
FbaI TGATCA 1 cut(s) 88
FblI GTMKAC 1 cut(s) 267
FspBI CTAG 2 cut(s) 77, 272
HapII CCGG 2 cut(s) 384, 401
Hin1II CATG 1 cut(s) 16
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
HindIII AAGCTT 1 cut(s) 126
HpaII CCGG 2 cut(s) 384, 401
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 3 cut(s) 268, 339, 393
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 3 cut(s) 268, 339, 393
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 3 cut(s) 207, 379, 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 3 cut(s) 35, 344, 360
Hsp92II CATG 1 cut(s) 16
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 2 cut(s) 88, 295
LweI GCATC 1 cut(s) 163
MaeI CTAG 2 cut(s) 77, 272
MaeIII GTNAC 2 cut(s) 313, 379
MalI GATC 2 cut(s) 90, 297
MboI GATC 2 cut(s) 88, 295
MboII GAAGA 2 cut(s) 36, 103
MluCI AATT 2 cut(s) 101, 396
MnlI CCTC 6 cut(s) 30, 65, 74, 133, 161, 355
MroXI GAANNNNTTC 1 cut(s) 127
MseI TTAA 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 2 cut(s) 384, 401
MspR9I CCNGG 2 cut(s) 155, 323
MvaI CCWGG 2 cut(s) 155, 323
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 2 cut(s) 88, 295
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 127
PflFI GACNNNGTC 1 cut(s) 140
Psp6I CCWGG 2 cut(s) 153, 321
PspGI CCWGG 2 cut(s) 153, 321
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 2 cut(s) 61, 258
PsyI GACNNNGTC 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 230
SaqAI TTAA 1 cut(s) 405
Sau3AI GATC 2 cut(s) 88, 295
Sau96I GGNCC 2 cut(s) 61, 258
ScrFI CCNGG 2 cut(s) 155, 323
SetI ASST 7 cut(s) 130, 144, 232, 273, 277, 303, 416
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 2 cut(s) 61, 258
Sse9I AATT 2 cut(s) 101, 396
SspMI CTAG 2 cut(s) 77, 272
StyD4I CCNGG 2 cut(s) 153, 321
TaaI ACNGT 3 cut(s) 207, 379, 390
TaqI TCGA 3 cut(s) 135, 202, 294
TasI AATT 2 cut(s) 101, 396
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 17, 362
TspRI CASTG 1 cut(s) 73
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 61, 258
XagI CCTNNNNNAGG 1 cut(s) 34
XapI RAATTY 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 127
XspI CTAG 2 cut(s) 77, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.