Rorug04G0038600

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016020
Physical Location & Seq
Reverse (-)
5790430 .. 5794969
4540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0038600.1

Sequence Viewer

Length: 762 bp
ATGGACACTTTCGCTACTTGTAGTCACAAGGACTACAGAGTAGTTGGCCGGTTCTTGAAGGATGACGAACCGGGTCGGTCACCAATTTGTTTTATTTTAGCCGGCAGGAACCCTAAGATCAAGGAGGCTATTACCCAGAAATTCACCGAGTACTTGCATCGCGCTGTGGAGATTCGCGCCGTTTTGGATGATGGCAGGGCCGGACCAGCCTCCAACGGTGATGCGGCGGTGGCTAGCAAGCCGAAAACCAAGCCCAAGGACGGCGAAGGCTATGATGGGGAGGATCCAGAGCAGGCCAAGCTCCGGGACGGGCTTAATTCGGCGATTATTAGGGGAAAAGCCAATTTCAAGTGGAATGATGTGGCGGGTCTCGAGAGCGGTAACCAGGCCTTGCAAGTGGCACTTGTATTGCCGGTCAAGTTCCTTACTGATTACCAAATGCCCAGGAATAAATATTGGTTTCCAAATCGGCAAGCTGAGCATGACTCTTATTTTTGGTTCATCCTCGCTACTCTGCTTTGCCTCTTTTTGAAAAGTGCAAATGTTTGCATTATAGCGGTCACTATTTTCTCAGACAAGTCGATGACAATCAACTTAGTTTTCTTGTTTTTCCGTTTGGTTTCAGGGCTCAGAGTACAGCAGCATAGTTTCTATGAGATAATTGTAAACAAGGCAAGGGGCAAAAGTGGACCGCTTTTTCATTTTGATGTACATGAGGATGTGCGAACAATTGCTGATGCTACAATTAATAGAGAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

253

Amino Acids

28.46

Weight (kDa)

8.8

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25830
fragaria_vesca FvH4_4g09300
malus_domestica MD13G1269300.v1.1
prunus_persica Prupe.1G088100_v2.0.a1
pyrus_communis pycom13g22330
rosa_chinensis RchiOBHm_Chr4g0402761
rosa_laevigata RLG00000009048
rosa_multiflora Rmu_sc0002451.1_g000031
rosa_roxburghii Rroxscaffold_5G00347520
rosa_rugosa Rorug04G0038600
rosa_samantha Rh4AG116000 Rh4BG108600 Rh4CG123300 Rh4DG108800
rosa_wichuraiana Rw4G009280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 378
AccII CGCG 2 cut(s) 162, 177
AciI CCGC 6 cut(s) 224, 227, 365, 378, 557, 692
AclWI GGATC 2 cut(s) 278, 291
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 140
AfaI GTAC 3 cut(s) 152, 636, 711
AfiI CCNNNNNNNGG 2 cut(s) 260, 303
AgsI TTSAA 3 cut(s) 58, 349, 532
AjnI CCWGG 2 cut(s) 384, 443
AluBI AGCT 2 cut(s) 301, 476
AluI AGCT 2 cut(s) 301, 476
Alw26I GTCTC 1 cut(s) 374
AlwI GGATC 2 cut(s) 278, 291
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 4 cut(s) 46, 198, 294, 387
ApeKI GCWGC 1 cut(s) 640
ApoI RAATTY 1 cut(s) 140
AseI ATTAAT 1 cut(s) 747
AspLEI GCGC 2 cut(s) 164, 179
AspS9I GGNCC 3 cut(s) 198, 203, 689
AsuC2I CCSGG 2 cut(s) 72, 305
AsuHPI GGTGA 3 cut(s) 72, 136, 230
AsuNHI GCTAGC 1 cut(s) 233
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 2 cut(s) 203, 689
BamHI GGATCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 630
BbvI GCAGC 1 cut(s) 652
BccI CCATC 2 cut(s) 185, 269
BceAI ACGGC 2 cut(s) 164, 277
BciT130I CCWGG 2 cut(s) 386, 445
BcnI CCSGG 2 cut(s) 72, 305
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 34
BisI GCNGC 2 cut(s) 225, 641
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 2 cut(s) 226, 642
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 4 cut(s) 72, 305, 386, 445
Bme18I GGWCC 2 cut(s) 203, 689
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 3 cut(s) 198, 203, 689
BmiI GGNNCC 2 cut(s) 110, 285
BmrFI CCNGG 4 cut(s) 72, 305, 386, 445
BmsI GCATC 3 cut(s) 166, 211, 727
BmtI GCTAGC 1 cut(s) 237
BplI GAGNNNNNCTC 2 cut(s) 470, 502
Bpu1102I GCTNAGC 1 cut(s) 477
BpuMI CCSGG 2 cut(s) 72, 305
BsaBI GATNNNNATC 1 cut(s) 587
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 255, 443
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 303
Bse118I RCCGGY 3 cut(s) 48, 101, 412
Bse8I GATNNNNATC 1 cut(s) 587
BseBI CCWGG 2 cut(s) 386, 445
BseDI CCNNGG 2 cut(s) 255, 443
BseGI GGATG 4 cut(s) 67, 193, 501, 724
BseJI GATNNNNATC 1 cut(s) 587
BseLI CCNNNNNNNGG 2 cut(s) 260, 303
BseMII CTCAG 3 cut(s) 468, 585, 643
BseXI GCAGC 1 cut(s) 652
Bsh1236I CGCG 2 cut(s) 162, 177
BshFI GGCC 4 cut(s) 48, 200, 296, 389
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 6 cut(s) 49, 71, 102, 201, 304, 413
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 2 cut(s) 260, 303
BsmAI GTCTC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 4 cut(s) 48, 200, 296, 389
Bso31I GGTCTC 1 cut(s) 374
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 630
Bsp1407I TGTACA 1 cut(s) 709
Bsp143I GATC 2 cut(s) 117, 283
Bsp1720I GCTNAGC 1 cut(s) 477
BspACI CCGC 6 cut(s) 224, 227, 365, 378, 557, 692
BspANI GGCC 4 cut(s) 48, 200, 296, 389
BspCNI CTCAG 3 cut(s) 469, 584, 642
BspFNI CGCG 2 cut(s) 162, 177
BspLI GGNNCC 2 cut(s) 110, 285
BspOI GCTAGC 1 cut(s) 237
BspPI GGATC 2 cut(s) 278, 291
BspTNI GGTCTC 1 cut(s) 374
BsrBI CCGCTC 1 cut(s) 378
BsrFI RCCGGY 3 cut(s) 48, 101, 412
BsrGI TGTACA 1 cut(s) 709
BssAI RCCGGY 3 cut(s) 48, 101, 412
BssECI CCNNGG 2 cut(s) 255, 443
BssMI GATC 2 cut(s) 117, 283
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 2 cut(s) 386, 445
Bst4CI ACNGT 1 cut(s) 218
BstAUI TGTACA 1 cut(s) 709
BstC8I GCNNGC 5 cut(s) 103, 235, 239, 294, 474
BstDEI CTNAG 5 cut(s) 114, 477, 571, 595, 629
BstEII GGTNACC 2 cut(s) 78, 380
BstF5I GGATG 4 cut(s) 67, 193, 501, 724
BstFNI CGCG 2 cut(s) 162, 177
BstHHI GCGC 2 cut(s) 164, 179
BstKTI GATC 2 cut(s) 120, 286
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 2 cut(s) 117, 283
BstMWI GCNNNNNNNGC 4 cut(s) 206, 230, 298, 478
BstNI CCWGG 2 cut(s) 386, 445
BstPI GGTNACC 2 cut(s) 78, 380
BstSCI CCNGG 4 cut(s) 70, 303, 384, 443
BstSFI CTRYAG 1 cut(s) 34
BstUI CGCG 2 cut(s) 162, 177
BstV1I GCAGC 1 cut(s) 652
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 4 cut(s) 48, 200, 296, 389
BtgZI GCGATG 1 cut(s) 143
BtsCI GGATG 4 cut(s) 67, 193, 501, 724
Cac8I GCNNGC 5 cut(s) 103, 235, 239, 294, 474
CfoI GCGC 2 cut(s) 164, 179
Cfr10I RCCGGY 3 cut(s) 48, 101, 412
Cfr13I GGNCC 3 cut(s) 198, 203, 689
Csp6I GTAC 3 cut(s) 151, 635, 710
CviAII CATG 2 cut(s) 482, 713
CviQI GTAC 3 cut(s) 151, 635, 710
DdeI CTNAG 5 cut(s) 114, 477, 571, 595, 629
DpnI GATC 2 cut(s) 119, 285
DpnII GATC 2 cut(s) 117, 283
EaeI YGGCCR 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 255
Eco147I AGGCCT 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 630
Eco31I GGTCTC 1 cut(s) 374
Eco47I GGWCC 2 cut(s) 203, 689
Eco88I CYCGRG 1 cut(s) 371
Eco91I GGTNACC 2 cut(s) 78, 380
EcoO65I GGTNACC 2 cut(s) 78, 380
EcoRII CCWGG 2 cut(s) 384, 443
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 630
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 2 cut(s) 485, 716
FaiI YATR 6 cut(s) 273, 483, 554, 645, 654, 714
FalI AAGNNNNNCTT 2 cut(s) 387, 419
FaqI GGGAC 1 cut(s) 320
FatI CATG 2 cut(s) 481, 712
FauI CCCGC 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 225, 641
FokI GGATG 4 cut(s) 74, 200, 488, 731
FriOI GRGCYC 1 cut(s) 630
Fsp4HI GCNGC 2 cut(s) 225, 641
FspBI CTAG 1 cut(s) 234
GlaI GCGC 2 cut(s) 163, 178
GluI GCNGC 2 cut(s) 225, 641
HaeIII GGCC 4 cut(s) 48, 200, 296, 389
HapII CCGG 6 cut(s) 49, 71, 102, 201, 304, 413
HhaI GCGC 2 cut(s) 164, 179
Hin1II CATG 2 cut(s) 485, 716
Hin6I GCGC 2 cut(s) 162, 177
HinP1I GCGC 2 cut(s) 162, 177
HinfI GANTC 2 cut(s) 172, 485
HpaII CCGG 6 cut(s) 49, 71, 102, 201, 304, 413
HphI GGTGA 3 cut(s) 72, 136, 230
Hpy166II GTNNAC 2 cut(s) 667, 689
Hpy188I TCNGA 2 cut(s) 574, 632
Hpy188III TCNNGA 4 cut(s) 55, 287, 371, 373
Hpy8I GTNNAC 2 cut(s) 667, 689
HpyAV CCTTC 3 cut(s) 52, 260, 749
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 4 cut(s) 157, 394, 539, 549
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 230, 298, 478
HpyF3I CTNAG 5 cut(s) 114, 477, 571, 595, 629
Hsp92II CATG 2 cut(s) 485, 716
HspAI GCGC 2 cut(s) 162, 177
KroI GCCGGC 1 cut(s) 101
KroNI GCCGGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 117, 283
LmnI GCTCC 1 cut(s) 306
Lsp1109I GCAGC 1 cut(s) 652
LweI GCATC 3 cut(s) 166, 211, 727
MaeI CTAG 1 cut(s) 234
MaeIII GTNAC 4 cut(s) 23, 78, 380, 559
MalI GATC 2 cut(s) 119, 285
MbiI CCGCTC 1 cut(s) 378
MboI GATC 2 cut(s) 117, 283
MfeI CAATTG 1 cut(s) 729
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 630
MluCI AATT 7 cut(s) 84, 140, 316, 343, 660, 729, 744
MlyI GAGTC 1 cut(s) 479
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 6 cut(s) 118, 220, 274, 515, 533, 709
MroNI GCCGGC 1 cut(s) 101
MseI TTAA 2 cut(s) 315, 747
MslI CAYNNNNRTG 2 cut(s) 705, 717
MspI CCGG 6 cut(s) 49, 71, 102, 201, 304, 413
MspR9I CCNGG 4 cut(s) 72, 305, 386, 445
MunI CAATTG 1 cut(s) 729
MvaI CCWGG 2 cut(s) 386, 445
MvnI CGCG 2 cut(s) 162, 177
MwoI GCNNNNNNNGC 4 cut(s) 206, 230, 298, 478
NaeI GCCGGC 1 cut(s) 103
NciI CCSGG 2 cut(s) 72, 305
NdeII GATC 2 cut(s) 117, 283
NgoMIV GCCGGC 1 cut(s) 101
NheI GCTAGC 1 cut(s) 233
NlaIII CATG 2 cut(s) 485, 716
NlaIV GGNNCC 2 cut(s) 110, 285
NmuCI GTSAC 3 cut(s) 23, 78, 559
PaeR7I CTCGAG 1 cut(s) 371
PceI AGGCCT 1 cut(s) 389
PdiI GCCGGC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 172
PfoI TCCNGGA 1 cut(s) 303
PkrI GCNGC 2 cut(s) 226, 642
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
PshBI ATTAAT 1 cut(s) 747
Psp6I CCWGG 2 cut(s) 384, 443
PspEI GGTNACC 2 cut(s) 78, 380
PspGI CCWGG 2 cut(s) 384, 443
PspN4I GGNNCC 2 cut(s) 110, 285
PspPI GGNCC 3 cut(s) 198, 203, 689
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 3 cut(s) 152, 636, 711
RsaNI GTAC 3 cut(s) 151, 635, 710
RseI CAYNNNNRTG 2 cut(s) 705, 717
SaqAI TTAA 2 cut(s) 315, 747
SatI GCNGC 2 cut(s) 225, 641
Sau3AI GATC 2 cut(s) 117, 283
Sau96I GGNCC 3 cut(s) 198, 203, 689
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 4 cut(s) 72, 305, 386, 445
SduI GDGCHC 1 cut(s) 630
SetI ASST 2 cut(s) 303, 478
SfaNI GCATC 3 cut(s) 166, 211, 727
SfcI CTRYAG 1 cut(s) 34
Sfr274I CTCGAG 1 cut(s) 371
SinI GGWCC 2 cut(s) 203, 689
SlaI CTCGAG 1 cut(s) 371
SmiMI CAYNNNNRTG 2 cut(s) 705, 717
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 7 cut(s) 84, 140, 316, 343, 660, 729, 744
SseBI AGGCCT 1 cut(s) 389
SsiI CCGC 6 cut(s) 224, 227, 365, 378, 557, 692
SspI AATATT 1 cut(s) 455
SspMI CTAG 1 cut(s) 234
StuI AGGCCT 1 cut(s) 389
StyD4I CCNGG 4 cut(s) 70, 303, 384, 443
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 218
TaqI TCGA 2 cut(s) 372, 581
TaqII GACCGA 1 cut(s) 66
TasI AATT 7 cut(s) 84, 140, 316, 343, 660, 729, 744
TatI WGTACW 3 cut(s) 150, 634, 709
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 2 cut(s) 315, 747
Tru9I TTAA 2 cut(s) 315, 747
TseFI GTSAC 3 cut(s) 23, 78, 559
TseI GCWGC 1 cut(s) 640
Tsp45I GTSAC 3 cut(s) 23, 78, 559
TspDTI ATGAA 2 cut(s) 490, 689
TspGWI ACGGA 1 cut(s) 602
VpaK11BI GGWCC 2 cut(s) 203, 689
VspI ATTAAT 1 cut(s) 747
XapI RAATTY 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 371
XspI CTAG 1 cut(s) 234
ZrmI AGTACT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.