Rh4DG108800

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0016020
Physical Location & Seq
Reverse (-)
16733956 .. 16740468
6513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG108800.1

Sequence Viewer

Length: 327 bp
ATGAAGTATCACATGGAGAACACAGAAGCCTTCCTGAGGCTCTCTTCAGTTATCCTCTTGGTCCTCACTGCGTTACTAGTAGGACTTGATCACCAGACCAAATTTGTCTTCTTCACTTACAGAAAAGCTTCTTTCGACGAGGTCAAAGCCCTCCTGGTTCTAGTTTATGTTGATGCTGTGGTTGCTGGATACAATCTGGTTCGACTGTTGGGCAAGTGTTCAATGTCAGCTGGTTTAGTCAAACAAAATCCACAAGGGTCCAGCCTATACGTAGCTTGGCTTTCTCTATTGCTCGATCAGGCAACCTGCAGGGGAGTAGCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

108

Amino Acids

11.9

Weight (kDa)

9.0

Isoelectric Point (pI)

21.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 7 - 103 1.2e-14 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25830
fragaria_vesca FvH4_4g09300
malus_domestica MD13G1269300.v1.1
prunus_persica Prupe.1G088100_v2.0.a1
pyrus_communis pycom13g22330
rosa_chinensis RchiOBHm_Chr4g0402761
rosa_laevigata RLG00000009048
rosa_multiflora Rmu_sc0002451.1_g000031
rosa_roxburghii Rroxscaffold_5G00347520
rosa_rugosa Rorug04G0038600
rosa_samantha Rh4AG116000 Rh4BG108600 Rh4CG123300 Rh4DG108800
rosa_wichuraiana Rw4G009280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 314
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 36
AgsI TTSAA 1 cut(s) 222
AhlI ACTAGT 1 cut(s) 76
AjnI CCWGG 1 cut(s) 153
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 4 cut(s) 128, 230, 275, 320
AluI AGCT 4 cut(s) 128, 230, 275, 320
ApoI RAATTY 1 cut(s) 101
Asp700I GAANNNNTTC 1 cut(s) 127
AspS9I GGNCC 2 cut(s) 61, 258
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 2 cut(s) 61, 258
AxyI CCTNAGG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 155
BciVI GTATCC 1 cut(s) 182
BclI TGATCA 1 cut(s) 88
BcuI ACTAGT 1 cut(s) 76
BfaI CTAG 2 cut(s) 77, 161
BfmI CTRYAG 1 cut(s) 307
BfuAI ACCTGC 1 cut(s) 314
BfuI GTATCC 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 155
Bme18I GGWCC 2 cut(s) 61, 258
BmgT120I GGNCC 2 cut(s) 61, 258
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 100
BsaAI YACGTR 1 cut(s) 271
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse21I CCTNAGG 1 cut(s) 35
BseBI CCWGG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 36
Bsp143I GATC 2 cut(s) 88, 295
BspCNI CTCAG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 259
BspMAI CTGCAG 1 cut(s) 311
BspMI ACCTGC 1 cut(s) 314
BssMI GATC 2 cut(s) 88, 295
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 35
BstENI CCTNNNNNAGG 1 cut(s) 34
BstKTI GATC 2 cut(s) 91, 298
BstMBI GATC 2 cut(s) 88, 295
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstSFI CTRYAG 1 cut(s) 307
BstSNI TACGTA 1 cut(s) 271
BstV2I GAAGAC 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 35
BsuI GTATCC 1 cut(s) 182
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
BveI ACCTGC 1 cut(s) 314
Cfr13I GGNCC 2 cut(s) 61, 258
CviAII CATG 1 cut(s) 13
CviJI RGCY 9 cut(s) 29, 40, 128, 149, 230, 264, 275, 280, 320
CviKI_1 RGCY 9 cut(s) 29, 40, 128, 149, 230, 264, 275, 280, 320
DdeI CTNAG 1 cut(s) 35
DpnI GATC 2 cut(s) 90, 297
DpnII GATC 2 cut(s) 88, 295
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco105I TACGTA 1 cut(s) 271
Eco47I GGWCC 2 cut(s) 61, 258
Eco57I CTGAAG 1 cut(s) 30
Eco81I CCTNAGG 1 cut(s) 35
EcoNI CCTNNNNNAGG 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 153
FaeI CATG 1 cut(s) 16
FaiI YATR 3 cut(s) 14, 168, 268
FatI CATG 1 cut(s) 12
FbaI TGATCA 1 cut(s) 88
FspBI CTAG 2 cut(s) 77, 161
Hin1II CATG 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 126
HphI GGTGA 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 40
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 1 cut(s) 16
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 2 cut(s) 88, 295
LweI GCATC 1 cut(s) 163
MaeI CTAG 2 cut(s) 77, 161
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 72
MalI GATC 2 cut(s) 90, 297
MboI GATC 2 cut(s) 88, 295
MboII GAAGA 3 cut(s) 36, 100, 103
MluCI AATT 1 cut(s) 101
MnlI CCTC 5 cut(s) 30, 65, 74, 133, 161
MroXI GAANNNNTTC 1 cut(s) 127
MspA1I CMGCKG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 2 cut(s) 88, 295
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 127
PflFI GACNNNGTC 1 cut(s) 140
Ppu21I YACGTR 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 2 cut(s) 61, 258
PstI CTGCAG 1 cut(s) 311
PsyI GACNNNGTC 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 230
Sau3AI GATC 2 cut(s) 88, 295
Sau96I GGNCC 2 cut(s) 61, 258
SbfI CCTGCAGG 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 155
SdaI CCTGCAGG 1 cut(s) 311
SetI ASST 7 cut(s) 130, 144, 232, 273, 277, 308, 322
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 2 cut(s) 61, 258
SnaBI TACGTA 1 cut(s) 271
SpeI ACTAGT 1 cut(s) 76
Sse8387I CCTGCAGG 1 cut(s) 311
Sse9I AATT 1 cut(s) 101
SspMI CTAG 2 cut(s) 77, 161
StyD4I CCNGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 1 cut(s) 273
TaqI TCGA 3 cut(s) 135, 202, 294
TasI AATT 1 cut(s) 101
TscAI CASTG 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 73
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 61, 258
XagI CCTNNNNNAGG 1 cut(s) 34
XapI RAATTY 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 127
XspI CTAG 2 cut(s) 77, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.