Rw4G009280

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0016020
Physical Location & Seq
Reverse (-)
20795341 .. 20801784
6444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G009280.1

Sequence Viewer

Length: 558 bp
ATGAAGTATCACATGGAGAACACAGAAGCCTTCCTGAGGCTCTCTTCAGTTATCCTCTTGGTCCTCACTGCGTTACTAGTAGGACTTGATCACCAGACCAAATTTGTCTTCTTCACTTACAGAAAAGCTTCTTTCGACGAGGTCAAAGCCCTCCTGGTTCTAGTTTATGTTGATGCTGTGGTTGCTGGATACAATCTGGTTCGACTGTTGGGCAAGTGTTCAATGTCAGCTGGTTTAGTCAAACAAAATCCACAAGGGTCCAGCCTATACGTAGCTTGGCTTTCTCTATTGCTCGATCAGATAGCAGTATATGTGGCGTTTGGGGCAAACTCAGCTGCGTTTCAGGCTTCAGTGATAGCATTAACAGGCATATCAGAATTTCAGTGGATGAAGTTGTGCAACAAATACTCCAGATTCTGCTTTCAAATGGGTGGAGCCTTGTCATGTGGATACCTAGCATGCCTTCTCTTGATTTTCATATCCTTCATCACTGCCTTTAATCTGTTTAGGCTTTACTCACCCAAGAAACTGTTTCTCTTAAAGAGCATATCAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

185

Amino Acids

20.56

Weight (kDa)

9.34

Isoelectric Point (pI)

26.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 7 - 156 6.1e-32 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016020)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G25830
fragaria_vesca FvH4_4g09300
malus_domestica MD13G1269300.v1.1
prunus_persica Prupe.1G088100_v2.0.a1
pyrus_communis pycom13g22330
rosa_chinensis RchiOBHm_Chr4g0402761
rosa_laevigata RLG00000009048
rosa_multiflora Rmu_sc0002451.1_g000031
rosa_roxburghii Rroxscaffold_5G00347520
rosa_rugosa Rorug04G0038600
rosa_samantha Rh4AG116000 Rh4BG108600 Rh4CG123300 Rh4DG108800
rosa_wichuraiana Rw4G009280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 101, 377
AcuI CTGAAG 2 cut(s) 30, 333
AfiI CCNNNNNNNGG 1 cut(s) 36
AgsI TTSAA 2 cut(s) 222, 425
AhlI ACTAGT 1 cut(s) 76
AjnI CCWGG 1 cut(s) 153
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AluBI AGCT 4 cut(s) 128, 230, 275, 335
AluI AGCT 4 cut(s) 128, 230, 275, 335
AlwNI CAGNNNCTG 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 2 cut(s) 101, 377
Asp700I GAANNNNTTC 1 cut(s) 127
AspS9I GGNCC 2 cut(s) 61, 258
AsuHPI GGTGA 2 cut(s) 83, 510
AvaII GGWCC 2 cut(s) 61, 258
AxyI CCTNAGG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 155
BciVI GTATCC 2 cut(s) 182, 443
BclI TGATCA 1 cut(s) 88
BcuI ACTAGT 1 cut(s) 76
BfaI CTAG 3 cut(s) 77, 161, 455
BfuI GTATCC 2 cut(s) 182, 443
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 155
Bme18I GGWCC 2 cut(s) 61, 258
BmgT120I GGNCC 2 cut(s) 61, 258
BmiI GGNNCC 2 cut(s) 259, 436
BmrFI CCNGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 163
BpiI GAAGAC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 394
BsaAI YACGTR 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 392, 422
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse21I CCTNAGG 1 cut(s) 35
BseBI CCWGG 1 cut(s) 155
BseGI GGATG 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMII CTCAG 2 cut(s) 26, 345
BseXI GCAGC 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 36
Bsp143I GATC 2 cut(s) 88, 295
BspCNI CTCAG 2 cut(s) 27, 344
BspLI GGNNCC 2 cut(s) 259, 436
BssMI GATC 2 cut(s) 88, 295
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 207, 531
Bst6I CTCTTC 1 cut(s) 49
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 460
BstDEI CTNAG 2 cut(s) 35, 331
BstENI CCTNNNNNAGG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 393
BstKTI GATC 2 cut(s) 91, 298
BstMBI GATC 2 cut(s) 88, 295
BstMWI GCNNNNNNNGC 4 cut(s) 182, 323, 332, 344
BstNI CCWGG 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 153
BstSNI TACGTA 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 35
BsuI GTATCC 2 cut(s) 182, 443
BtsCI GGATG 1 cut(s) 393
BtsI GCAGTG 2 cut(s) 66, 489
BtsIMutI CAGTG 4 cut(s) 66, 357, 389, 489
Cac8I GCNNGC 1 cut(s) 460
CaiI CAGNNNCTG 1 cut(s) 417
Cfr13I GGNCC 2 cut(s) 61, 258
CviAII CATG 3 cut(s) 13, 444, 459
DdeI CTNAG 2 cut(s) 35, 331
DpnI GATC 2 cut(s) 90, 297
DpnII GATC 2 cut(s) 88, 295
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco105I TACGTA 1 cut(s) 271
Eco47I GGWCC 2 cut(s) 61, 258
Eco57I CTGAAG 2 cut(s) 30, 333
Eco81I CCTNAGG 1 cut(s) 35
EcoNI CCTNNNNNAGG 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 153
FaeI CATG 3 cut(s) 16, 447, 462
FatI CATG 3 cut(s) 12, 443, 458
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 1 cut(s) 400
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 3 cut(s) 77, 161, 455
GluI GCNGC 1 cut(s) 336
GsuI CTGGAG 1 cut(s) 394
Hin1II CATG 3 cut(s) 16, 447, 462
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 1 cut(s) 414
HphI GGTGA 2 cut(s) 83, 510
Hpy188I TCNGA 2 cut(s) 300, 376
Hpy188III TCNNGA 3 cut(s) 34, 411, 469
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 3 cut(s) 40, 473, 493
HpyCH4III ACNGT 2 cut(s) 207, 531
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 399
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 323, 332, 344
HpyF3I CTNAG 2 cut(s) 35, 331
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 3 cut(s) 16, 447, 462
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 2 cut(s) 88, 295
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 1 cut(s) 163
MaeI CTAG 3 cut(s) 77, 161, 455
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 72
MalI GATC 2 cut(s) 90, 297
MboI GATC 2 cut(s) 88, 295
MboII GAAGA 3 cut(s) 36, 100, 103
MluCI AATT 2 cut(s) 101, 377
MnlI CCTC 5 cut(s) 30, 65, 74, 133, 161
MroXI GAANNNNTTC 1 cut(s) 127
MseI TTAA 3 cut(s) 362, 498, 539
MspA1I CMGCKG 2 cut(s) 230, 335
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 4 cut(s) 182, 323, 332, 344
NdeII GATC 2 cut(s) 88, 295
NlaIII CATG 3 cut(s) 16, 447, 462
NlaIV GGNNCC 2 cut(s) 259, 436
NspI RCATGY 1 cut(s) 462
PaeI GCATGC 1 cut(s) 462
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 414
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 337
Ppu21I YACGTR 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 259, 436
PspPI GGNCC 2 cut(s) 61, 258
PstNI CAGNNNCTG 1 cut(s) 417
PsyI GACNNNGTC 1 cut(s) 140
PvuII CAGCTG 2 cut(s) 230, 335
SaqAI TTAA 3 cut(s) 362, 498, 539
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 88, 295
Sau96I GGNCC 2 cut(s) 61, 258
ScrFI CCNGG 1 cut(s) 155
SetI ASST 7 cut(s) 130, 144, 232, 273, 277, 337, 456
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 2 cut(s) 61, 258
SnaBI TACGTA 1 cut(s) 271
SpeI ACTAGT 1 cut(s) 76
SphI GCATGC 1 cut(s) 462
Sse9I AATT 2 cut(s) 101, 377
SspMI CTAG 3 cut(s) 77, 161, 455
StyD4I CCNGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 207, 531
TaiI ACGT 1 cut(s) 273
TaqI TCGA 3 cut(s) 135, 202, 294
TasI AATT 2 cut(s) 101, 377
TfiI GAWTC 1 cut(s) 414
Tru1I TTAA 3 cut(s) 362, 498, 539
Tru9I TTAA 3 cut(s) 362, 498, 539
TscAI CASTG 4 cut(s) 73, 357, 389, 496
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 4 cut(s) 17, 404, 466, 475
TspRI CASTG 4 cut(s) 73, 357, 389, 496
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 61, 258
XagI CCTNNNNNAGG 1 cut(s) 34
XapI RAATTY 2 cut(s) 101, 377
XceI RCATGY 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 127
XspI CTAG 3 cut(s) 77, 161, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.