Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018217

Physical Location & Seq

Genomic Coordinates Reverse (-)

53348513 .. 53349921

Gene Structure 1409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009470

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGTTCCCCTGCCGGGTAGAGATGAGCGCTGTTTGATCCTGAAAGCTCTTGCAAGGAAGAAGCCTATAGATCCCAGTGTAGACCTCAATGAGATTGGTCGATGGAAGGCTCATAACAATTTTAGTGGAGCTGATCTCTCTGACTGTGGCCTGTGCAGCGCAGCCCTCGAGTCCCGCCACGAACCAGCCAAGCCACGAGTCAACCCCGCCACGAACCAGTCTCGCCATGATCCCCGCTATGAACCAGCCCCACCACTAGCCGCACCGTCAAGCTTCGTCAGAAGCCAGCACCACCTCGAGCCCCAAACCACTGCAGATACAACACTCAGCTCCAATCGCCGCAAGCCACACCGTCGCCTAGACGCCCACGATTCGCCGTTGCCGGATTGCATCCCCAGAGCATTGAAGTGCCCGTCCGGCAGCCAGCAACAGACGACAAGGCCGAAGCCGGCGCTATCCATGGCCGCCGCCGGACAGGGAACAATCTGGTGGGTTTGTGCTCTCTCGAGGAGCTCGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA Nucleolin_bd

Protein Analysis

174

Amino Acids

18.9

Weight (kDa)

9.54

Isoelectric Point (pI)

59.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018217)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009470 RLG00000009473 RLG00000009476 RLG00000009479 RLG00000009482 RLG00000009485 RLG00000020097
rosa_multiflora	Rmu_sc0002963.1_g000020
rosa_roxburghii	Rroxscaffold_4G00309790
rosa_samantha	Rh4AG075600 Rh4CG080400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	7 cut(s)	175, 207, 235, 261, 340, 465, 468
AclWI	GGATC	3 cut(s)	31, 65, 224
AcoI	YGGCCR	1 cut(s)	462
AcyI	GRCGYC	1 cut(s)	363
AfeI	AGCGCT	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	406
AluBI	AGCT	5 cut(s)	47, 131, 273, 330, 513
AluI	AGCT	5 cut(s)	47, 131, 273, 330, 513
Alw21I	GWGCWC	2 cut(s)	502, 515
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	3 cut(s)	31, 65, 224
Ama87I	CYCGRG	4 cut(s)	167, 296, 505, 514
Aor51HI	AGCGCT	1 cut(s)	29
AoxI	GGCC	3 cut(s)	148, 440, 462
ApeKI	GCWGC	3 cut(s)	156, 161, 420
AspLEI	GCGC	3 cut(s)	30, 161, 454
AsuC2I	CCSGG	1 cut(s)	15
AvaI	CYCGRG	4 cut(s)	167, 296, 505, 514
BaeGI	GKGCMC	1 cut(s)	413
BanII	GRGCYC	2 cut(s)	303, 515
BauI	CACGAG	1 cut(s)	195
Bbv12I	GWGCWC	2 cut(s)	502, 515
BbvI	GCAGC	3 cut(s)	168, 173, 432
BccI	CCATC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	361
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	3 cut(s)	257, 359, 520
BfmI	CTRYAG	2 cut(s)	66, 312
BfoI	RGCGCY	2 cut(s)	31, 455
BglI	GCCNNNNNGGC	1 cut(s)	417
BisI	GCNGC	7 cut(s)	157, 162, 261, 340, 421, 465, 468
BlsI	GCNGC	7 cut(s)	158, 163, 262, 341, 422, 466, 469
Bme1390I	CCNGG	1 cut(s)	15
BmeT110I	CYCGRG	4 cut(s)	167, 296, 505, 514
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpuMI	CCSGG	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	2 cut(s)	75, 217
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	340
BseNI	ACTGG	2 cut(s)	75, 217
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	3 cut(s)	168, 173, 432
BsgI	GTGCAG	1 cut(s)	175
BshFI	GGCC	3 cut(s)	150, 442, 464
BsiHKAI	GWGCWC	2 cut(s)	502, 515
BsiHKCI	CYCGRG	4 cut(s)	167, 296, 505, 514
BsiSI	CCGG	5 cut(s)	14, 383, 417, 449, 471
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	225
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	3 cut(s)	150, 442, 464
BsoBI	CYCGRG	4 cut(s)	167, 296, 505, 514
Bsp1286I	GDGCHC	4 cut(s)	303, 413, 502, 515
Bsp143I	GATC	4 cut(s)	36, 70, 133, 229
Bsp19I	CCATGG	1 cut(s)	459
BspACI	CCGC	7 cut(s)	175, 207, 235, 261, 340, 465, 468
BspANI	GGCC	3 cut(s)	150, 442, 464
BspCNI	CTCAG	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	316
BspPI	GGATC	3 cut(s)	31, 65, 224
BsrFI	RCCGGY	1 cut(s)	448
BsrI	ACTGG	2 cut(s)	75, 217
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	4 cut(s)	36, 70, 133, 229
BssNI	GRCGYC	1 cut(s)	363
BssSI	CACGAG	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	195
Bst4CI	ACNGT	3 cut(s)	146, 267, 353
BstACI	GRCGYC	1 cut(s)	363
BstC8I	GCNNGC	4 cut(s)	287, 344, 425, 450
BstDEI	CTNAG	1 cut(s)	326
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	390
BstH2I	RGCGCY	2 cut(s)	31, 455
BstHHI	GCGC	3 cut(s)	30, 161, 454
BstKTI	GATC	4 cut(s)	39, 73, 136, 232
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	4 cut(s)	36, 70, 133, 229
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 336, 417
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	2 cut(s)	66, 312
BstSLI	GKGCMC	1 cut(s)	413
BstV1I	GCAGC	3 cut(s)	168, 173, 432
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	150, 442, 464
BtgI	CCRYGG	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	390
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	82, 309
Cac8I	GCNNGC	4 cut(s)	287, 344, 425, 450
CfoI	GCGC	3 cut(s)	30, 161, 454
Cfr10I	RCCGGY	1 cut(s)	448
CseI	GACGC	1 cut(s)	371
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviAII	CATG	2 cut(s)	227, 460
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	4 cut(s)	38, 72, 135, 231
DpnII	GATC	4 cut(s)	36, 70, 133, 229
EaeI	YGGCCR	1 cut(s)	462
Ecl136II	GAGCTC	1 cut(s)	513
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	2 cut(s)	303, 515
Eco47III	AGCGCT	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	513
Eco88I	CYCGRG	4 cut(s)	167, 296, 505, 514
EcoICRI	GAGCTC	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	2 cut(s)	303, 515
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	2 cut(s)	230, 463
FaiI	YATR	5 cut(s)	68, 114, 228, 240, 461
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	2 cut(s)	226, 459
FauI	CCCGC	3 cut(s)	182, 214, 242
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	7 cut(s)	157, 162, 261, 340, 421, 465, 468
FokI	GGATG	1 cut(s)	377
FriOI	GRGCYC	2 cut(s)	303, 515
Fsp4HI	GCNGC	7 cut(s)	157, 162, 261, 340, 421, 465, 468
FspBI	CTAG	3 cut(s)	257, 359, 520
GlaI	GCGC	3 cut(s)	29, 160, 453
GluI	GCNGC	7 cut(s)	157, 162, 261, 340, 421, 465, 468
HaeII	RGCGCY	2 cut(s)	31, 455
HaeIII	GGCC	3 cut(s)	150, 442, 464
HapII	CCGG	5 cut(s)	14, 383, 417, 449, 471
HgaI	GACGC	1 cut(s)	371
HhaI	GCGC	3 cut(s)	30, 161, 454
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	230, 463
Hin6I	GCGC	3 cut(s)	28, 159, 452
HinP1I	GCGC	3 cut(s)	28, 159, 452
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	3 cut(s)	170, 198, 371
HpaII	CCGG	5 cut(s)	14, 383, 417, 449, 471
Hpy166II	GTNNAC	2 cut(s)	82, 202
Hpy188I	TCNGA	2 cut(s)	142, 281
Hpy188III	TCNNGA	2 cut(s)	40, 505
Hpy8I	GTNNAC	2 cut(s)	82, 202
Hpy99I	CGWCG	1 cut(s)	357
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	3 cut(s)	146, 267, 353
HpyCH4V	TGCA	4 cut(s)	53, 156, 314, 390
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 336, 417
HpyF3I	CTNAG	1 cut(s)	326
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	230, 463
HspAI	GCGC	3 cut(s)	28, 159, 452
KroI	GCCGGC	1 cut(s)	448
KroNI	GCCGGC	1 cut(s)	450
Kzo9I	GATC	4 cut(s)	36, 70, 133, 229
LmnI	GCTCC	3 cut(s)	128, 335, 510
Lsp1109I	GCAGC	3 cut(s)	168, 173, 432
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	3 cut(s)	257, 359, 520
MalI	GATC	4 cut(s)	38, 72, 135, 231
MboI	GATC	4 cut(s)	36, 70, 133, 229
MboII	GAAGA	1 cut(s)	70
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	4 cut(s)	303, 413, 502, 515
MluCI	AATT	1 cut(s)	118
MlyI	GAGTC	2 cut(s)	179, 207
MnlI	CCTC	4 cut(s)	95, 176, 305, 501
MroNI	GCCGGC	1 cut(s)	448
MslI	CAYNNNNRTG	1 cut(s)	406
MspI	CCGG	5 cut(s)	14, 383, 417, 449, 471
MspR9I	CCNGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	156, 336, 417
NaeI	GCCGGC	1 cut(s)	450
NciI	CCSGG	1 cut(s)	15
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	4 cut(s)	36, 70, 133, 229
NgoMIV	GCCGGC	1 cut(s)	448
NlaIII	CATG	2 cut(s)	230, 463
NlaIV	GGNNCC	1 cut(s)	6
PaeR7I	CTCGAG	3 cut(s)	167, 296, 505
PcsI	WCGNNNNNNNCGW	1 cut(s)	440
PdiI	GCCGGC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	7 cut(s)	158, 163, 262, 341, 422, 466, 469
PleI	GAGTC	2 cut(s)	178, 206
PpsI	GAGTC	2 cut(s)	178, 206
Psp124BI	GAGCTC	1 cut(s)	515
PspN4I	GGNNCC	1 cut(s)	6
PspXI	VCTCGAGB	2 cut(s)	167, 296
PstI	CTGCAG	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	406
SacI	GAGCTC	1 cut(s)	515
SatI	GCNGC	7 cut(s)	157, 162, 261, 340, 421, 465, 468
Sau3AI	GATC	4 cut(s)	36, 70, 133, 229
SchI	GAGTC	2 cut(s)	179, 207
ScrFI	CCNGG	1 cut(s)	15
SduI	GDGCHC	4 cut(s)	303, 413, 502, 515
SetI	ASST	7 cut(s)	49, 87, 133, 275, 297, 332, 515
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	2 cut(s)	66, 312
Sfr274I	CTCGAG	3 cut(s)	167, 296, 505
SlaI	CTCGAG	3 cut(s)	167, 296, 505
SmiMI	CAYNNNNRTG	1 cut(s)	406
SmlI	CTYRAG	3 cut(s)	167, 296, 505
SmoI	CTYRAG	3 cut(s)	167, 296, 505
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	7 cut(s)	175, 207, 235, 261, 340, 465, 468
SspMI	CTAG	3 cut(s)	257, 359, 520
SstI	GAGCTC	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	3 cut(s)	146, 267, 353
TaqI	TCGA	4 cut(s)	100, 168, 297, 506
TasI	AATT	1 cut(s)	118
TauI	GCSGC	4 cut(s)	263, 342, 467, 470
TfiI	GAWTC	1 cut(s)	371
TscAI	CASTG	2 cut(s)	82, 316
TseI	GCWGC	3 cut(s)	156, 161, 420
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	2 cut(s)	82, 316
XhoI	CTCGAG	3 cut(s)	167, 296, 505
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	3 cut(s)	257, 359, 520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.