Rh4CG080400

Cell division control protein 48 homolog C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0018217
Physical Location & Seq
Forward (+)
14374460 .. 14388685
14226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG080400.1

Sequence Viewer

Length: 1068 bp
ATGATTTTTCCAAATCTGAAGGTGGATGCTTTGACAACAAAACAGGGCAGACAAGGGGGATGGGACGTTGTTCGGCTATTGAACCAGTTACTTGCAGAGTCAGATGGTGCAGATCCGCAGCGGGGTATATTTGTTATTGGGGCCACTAATAGACCCGATGTGATTGATCCTGCTGTTTTACGGCCGGGAAGGTTTGGTAAACATATTTATGTTCCCCTGCTGGGTAGAGATGAGCGCTGTTTGATCCTGAAAGCTCTTAAAAGGAAGAAGCCTATAGATCCCAGTGTAGACCTCAACGAGATTGGAAGCCAAAAAAAGAAGAGGGAAGGTGTTGGAAAATACCCTCAGCTCATCCAAACTTGTTCTGTTGTTCATATATTTTTCATTACGCGCATCATGAACGAAGCTGCAATGGCTGCTCTTGAAGAAAAATCAACATCAACCGATGAGAGTGTGATTTCATATCCAGAGACTATCAAAAAGTGTCACCTAGAACAATCACTTGCTAGAATCACACCATCTGTAACAGATAAGCAAATTGAGCGATACCTGAAATTTGGAAAAGGACGTGTGAAAGGATTAAAAAGTACAAAGGTGATGAGGGGTTCATGGAAGAGTGTTGTTAATAACAGAAACGATTTATTTGATACCTCGACGTTCGCCAAGATGTTGATCACAGCTTGCAGATGCACTCATCATTGGTACAACGACTTTCTCACAGAGTTGGAGGTTTGCTTCAACTTCACAGCTTCTTATTTGCTAAATGATAATGGAAATTCGGAAATTCTCTTGAATAGTAGATGTCCATGGTGTTCGGAATATGAAAGATCCTCGAGGTATATAGACAATTCGGTCTGGTGGCTCACTCAAGGAGAAAGAAGTGTGGCAACTGTCAAGGAGGAAAGATGTGATGCACAGTGCGCTAAAAAGGATACTAGTTGGTTTAAAACAACATATCATCGATTCAGTGACACATACTACATGATGATACACTTGGATCCTTTTGAATATAGCAACTCAAAATTGCTCAAAAAGGTTCCAAACTCAAAAGTTGACAATGCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
AAA Nucleolin_bd

Protein Analysis

355

Amino Acids

40.63

Weight (kDa)

9.15

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 8 - 73 1.5e-10 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 851
AbsI CCTCGAGG 1 cut(s) 832
AccI GTMKAC 1 cut(s) 288
AccII CGCG 1 cut(s) 391
AciI CCGC 2 cut(s) 116, 121
AclWI GGATC 7 cut(s) 107, 161, 238, 272, 822, 992, 1005
AcoI YGGCCR 1 cut(s) 182
AcsI RAATTY 3 cut(s) 554, 775, 783
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 2 cut(s) 589, 704
AfeI AGCGCT 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 122, 221
AflIII ACRYGT 1 cut(s) 568
AgsI TTSAA 5 cut(s) 82, 425, 739, 793, 1007
AhlI ACTAGT 1 cut(s) 935
AjiI CACGTC 1 cut(s) 569
AluBI AGCT 6 cut(s) 254, 349, 407, 680, 749, 1065
AluI AGCT 6 cut(s) 254, 349, 407, 680, 749, 1065
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 7 cut(s) 107, 161, 238, 272, 822, 992, 1005
Ama87I CYCGRG 1 cut(s) 832
Aor51HI AGCGCT 1 cut(s) 236
AoxI GGCC 2 cut(s) 141, 182
ApeKI GCWGC 3 cut(s) 118, 407, 416
ApoI RAATTY 3 cut(s) 554, 775, 783
AspLEI GCGC 3 cut(s) 237, 393, 923
AspS9I GGNCC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 2 cut(s) 479, 607
AvaI CYCGRG 1 cut(s) 832
BamHI GGATCC 1 cut(s) 997
BbvCI CCTCAGC 1 cut(s) 345
BbvI GCAGC 3 cut(s) 130, 394, 403
BccI CCATC 3 cut(s) 54, 98, 526
BceAI ACGGC 1 cut(s) 197
BciVI GTATCC 1 cut(s) 925
BclI TGATCA 1 cut(s) 672
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 464
BcuI ACTAGT 1 cut(s) 935
BfaI CTAG 4 cut(s) 491, 507, 936, 1066
BfmI CTRYAG 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 238
BfuI GTATCC 1 cut(s) 925
BisI GCNGC 3 cut(s) 119, 408, 417
BlsI GCNGC 3 cut(s) 120, 409, 418
Bme1390I CCNGG 1 cut(s) 186
BmeT110I CYCGRG 1 cut(s) 832
BmgBI CACGTC 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 3 cut(s) 142, 999, 1038
BmrFI CCNGG 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 276
BmsI GCATC 4 cut(s) 16, 402, 677, 901
BmuI ACTGGG 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 852
BpuMI CCSGG 1 cut(s) 186
Bsa29I ATCGAT 1 cut(s) 961
BsaBI GATNNNNATC 1 cut(s) 671
BsaJI CCNNGG 1 cut(s) 806
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 221
Bse1I ACTGG 2 cut(s) 85, 282
Bse3DI GCAATG 1 cut(s) 417
Bse8I GATNNNNATC 1 cut(s) 671
BseCI ATCGAT 1 cut(s) 961
BseDI CCNNGG 1 cut(s) 806
BseGI GGATG 3 cut(s) 31, 65, 351
BseJI GATNNNNATC 1 cut(s) 671
BseLI CCNNNNNNNGG 2 cut(s) 122, 221
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 2 cut(s) 85, 282
BseX3I CGGCCG 1 cut(s) 182
BseXI GCAGC 3 cut(s) 130, 394, 403
BseYI CCCAGC 1 cut(s) 220
BsgI GTGCAG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 391
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 2 cut(s) 143, 184
BshVI ATCGAT 1 cut(s) 961
BsiEI CGRYCG 1 cut(s) 185
BsiHKCI CYCGRG 1 cut(s) 832
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 122, 221
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 2 cut(s) 143, 184
BsoBI CYCGRG 1 cut(s) 832
Bsp143I GATC 7 cut(s) 112, 166, 243, 277, 672, 827, 997
Bsp19I CCATGG 1 cut(s) 806
BspACI CCGC 2 cut(s) 116, 121
BspANI GGCC 2 cut(s) 143, 184
BspCNI CTCAG 1 cut(s) 358
BspDI ATCGAT 1 cut(s) 961
BspFNI CGCG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 396
BspLI GGNNCC 3 cut(s) 142, 999, 1038
BspPI GGATC 7 cut(s) 107, 161, 238, 272, 822, 992, 1005
BsrDI GCAATG 1 cut(s) 417
BsrI ACTGG 2 cut(s) 85, 282
BssECI CCNNGG 1 cut(s) 806
BssMI GATC 7 cut(s) 112, 166, 243, 277, 672, 827, 997
BssT1I CCWWGG 1 cut(s) 806
Bst4CI ACNGT 2 cut(s) 892, 918
Bst6I CTCTTC 2 cut(s) 314, 608
BstAPI GCANNNNNTGC 1 cut(s) 416
BstC8I GCNNGC 2 cut(s) 682, 1063
BstDEI CTNAG 1 cut(s) 345
BstDSI CCRYGG 1 cut(s) 806
BstF5I GGATG 3 cut(s) 31, 65, 351
BstFNI CGCG 1 cut(s) 391
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 3 cut(s) 237, 393, 923
BstKTI GATC 7 cut(s) 115, 169, 246, 280, 675, 830, 1000
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 7 cut(s) 112, 166, 243, 277, 672, 827, 997
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 4 cut(s) 413, 416, 541, 920
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 273
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 3 cut(s) 130, 394, 403
BstX2I RGATCY 4 cut(s) 112, 277, 827, 997
BstYI RGATCY 4 cut(s) 112, 277, 827, 997
BstZI CGGCCG 1 cut(s) 182
Bsu15I ATCGAT 1 cut(s) 961
BsuI GTATCC 1 cut(s) 925
BsuRI GGCC 2 cut(s) 143, 184
BsuTUI ATCGAT 1 cut(s) 961
BtgI CCRYGG 1 cut(s) 806
BtrI CACGTC 1 cut(s) 569
BtsCI GGATG 3 cut(s) 31, 65, 351
BtsIMutI CAGTG 3 cut(s) 289, 923, 973
Cac8I GCNNGC 2 cut(s) 682, 1063
CciI TCATGA 1 cut(s) 396
CfoI GCGC 3 cut(s) 237, 393, 923
Cfr13I GGNCC 1 cut(s) 141
ClaI ATCGAT 1 cut(s) 961
Csp6I GTAC 2 cut(s) 588, 703
CviAII CATG 4 cut(s) 397, 609, 807, 982
CviQI GTAC 2 cut(s) 588, 703
DdeI CTNAG 1 cut(s) 345
DpnI GATC 7 cut(s) 114, 168, 245, 279, 674, 829, 999
DpnII GATC 7 cut(s) 112, 166, 243, 277, 672, 827, 997
DraI TTTAAA 1 cut(s) 946
DrdI GACNNNNNNGTC 1 cut(s) 851
DseDI GACNNNNNNGTC 1 cut(s) 851
EaeI YGGCCR 1 cut(s) 182
EagI CGGCCG 1 cut(s) 182
Eam1104I CTCTTC 2 cut(s) 314, 608
EarI CTCTTC 2 cut(s) 314, 608
EclXI CGGCCG 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 806
Eco47III AGCGCT 1 cut(s) 236
Eco52I CGGCCG 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 832
EcoT14I CCWWGG 1 cut(s) 806
ErhI CCWWGG 1 cut(s) 806
FaeI CATG 4 cut(s) 400, 612, 810, 985
FaqI GGGAC 1 cut(s) 77
FatI CATG 4 cut(s) 396, 608, 806, 981
FauI CCCGC 1 cut(s) 114
FbaI TGATCA 1 cut(s) 672
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 3 cut(s) 119, 408, 417
FokI GGATG 3 cut(s) 38, 72, 338
Fsp4HI GCNGC 3 cut(s) 119, 408, 417
FspBI CTAG 4 cut(s) 491, 507, 936, 1066
GlaI GCGC 3 cut(s) 236, 392, 922
GluI GCNGC 3 cut(s) 119, 408, 417
GsaI CCCAGC 1 cut(s) 224
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 2 cut(s) 143, 184
HapII CCGG 1 cut(s) 185
HhaI GCGC 3 cut(s) 237, 393, 923
Hin1II CATG 4 cut(s) 400, 612, 810, 985
Hin6I GCGC 3 cut(s) 235, 391, 921
HinP1I GCGC 3 cut(s) 235, 391, 921
HincII GTYRAC 1 cut(s) 1054
HindII GTYRAC 1 cut(s) 1054
HinfI GANTC 3 cut(s) 98, 510, 963
HpaII CCGG 1 cut(s) 185
HphI GGTGA 2 cut(s) 479, 607
Hpy166II GTNNAC 3 cut(s) 200, 289, 1054
Hpy188I TCNGA 4 cut(s) 18, 103, 781, 817
Hpy188III TCNNGA 5 cut(s) 247, 397, 422, 467, 790
Hpy8I GTNNAC 3 cut(s) 200, 289, 1054
Hpy99I CGWCG 1 cut(s) 658
HpyAV CCTTC 3 cut(s) 13, 183, 320
HpyCH4III ACNGT 2 cut(s) 892, 918
HpyCH4IV ACGT 3 cut(s) 66, 568, 656
HpyCH4V TGCA 7 cut(s) 95, 110, 410, 684, 690, 914, 1061
HpyF10VI GCNNNNNNNGC 4 cut(s) 413, 416, 541, 920
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 3 cut(s) 66, 568, 656
Hsp92II CATG 4 cut(s) 400, 612, 810, 985
HspAI GCGC 3 cut(s) 235, 391, 921
Ksp22I TGATCA 1 cut(s) 672
Kzo9I GATC 7 cut(s) 112, 166, 243, 277, 672, 827, 997
Lsp1109I GCAGC 3 cut(s) 130, 394, 403
LweI GCATC 4 cut(s) 16, 402, 677, 901
MaeI CTAG 4 cut(s) 491, 507, 936, 1066
MaeII ACGT 3 cut(s) 66, 568, 656
MaeIII GTNAC 4 cut(s) 87, 485, 523, 968
MalI GATC 7 cut(s) 114, 168, 245, 279, 674, 829, 999
MboI GATC 7 cut(s) 112, 166, 243, 277, 672, 827, 997
MboII GAAGA 4 cut(s) 277, 331, 437, 625
MflI RGATCY 4 cut(s) 112, 277, 827, 997
MluCI AATT 6 cut(s) 537, 554, 775, 783, 847, 1022
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 2 cut(s) 313, 705
MnlI CCTC 9 cut(s) 302, 315, 354, 594, 661, 721, 828, 841, 892
MseI TTAA 4 cut(s) 258, 581, 624, 945
MslI CAYNNNNRTG 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 186
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 4 cut(s) 413, 416, 541, 920
NciI CCSGG 1 cut(s) 186
NcoI CCATGG 1 cut(s) 806
NdeII GATC 7 cut(s) 112, 166, 243, 277, 672, 827, 997
NlaIII CATG 4 cut(s) 400, 612, 810, 985
NlaIV GGNNCC 3 cut(s) 142, 999, 1038
NmuCI GTSAC 2 cut(s) 485, 968
PaeR7I CTCGAG 1 cut(s) 832
PagI TCATGA 1 cut(s) 396
PfeI GAWTC 2 cut(s) 510, 963
PkrI GCNGC 3 cut(s) 120, 409, 418
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 220
PspN4I GGNNCC 3 cut(s) 142, 999, 1038
PspPI GGNCC 1 cut(s) 141
PspXI VCTCGAGB 1 cut(s) 832
PsuI RGATCY 4 cut(s) 112, 277, 827, 997
RsaI GTAC 2 cut(s) 589, 704
RsaNI GTAC 2 cut(s) 588, 703
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 4 cut(s) 258, 581, 624, 945
SatI GCNGC 3 cut(s) 119, 408, 417
Sau3AI GATC 7 cut(s) 112, 166, 243, 277, 672, 827, 997
Sau96I GGNCC 1 cut(s) 141
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 186
SfaNI GCATC 4 cut(s) 16, 402, 677, 901
SfcI CTRYAG 1 cut(s) 273
Sfr274I CTCGAG 1 cut(s) 832
SlaI CTCGAG 1 cut(s) 832
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 2 cut(s) 832, 867
SmoI CTYRAG 2 cut(s) 832, 867
SpeI ACTAGT 1 cut(s) 935
Sse9I AATT 6 cut(s) 537, 554, 775, 783, 847, 1022
SsiI CCGC 2 cut(s) 116, 121
SspMI CTAG 4 cut(s) 491, 507, 936, 1066
StyD4I CCNGG 1 cut(s) 184
StyI CCWWGG 1 cut(s) 806
TaaI ACNGT 2 cut(s) 892, 918
TaiI ACGT 3 cut(s) 69, 571, 659
TaqI TCGA 3 cut(s) 653, 833, 961
TaqII GACCGA 1 cut(s) 841
TasI AATT 6 cut(s) 537, 554, 775, 783, 847, 1022
TatI WGTACW 1 cut(s) 587
TfiI GAWTC 2 cut(s) 510, 963
Tru1I TTAA 4 cut(s) 258, 581, 624, 945
Tru9I TTAA 4 cut(s) 258, 581, 624, 945
TscAI CASTG 3 cut(s) 289, 923, 973
TseFI GTSAC 2 cut(s) 485, 968
TseI GCWGC 3 cut(s) 118, 407, 416
Tsp45I GTSAC 2 cut(s) 485, 968
TspDTI ATGAA 6 cut(s) 362, 373, 413, 450, 597, 837
TspRI CASTG 3 cut(s) 289, 923, 973
XapI RAATTY 3 cut(s) 554, 775, 783
XhoI CTCGAG 1 cut(s) 832
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 4 cut(s) 491, 507, 936, 1066
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.