Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018217

Physical Location & Seq

Genomic Coordinates Reverse (-)

53367357 .. 53369717

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009473

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCTGATTGCAAAGGCTGTTGCAAGTGAGGCAAGAGCTAATTTTATTTACATCAAGGTGGATGCTTTGACAACACAACAGGGCAGACAAGGGGGATGGGACGTTTTTCGGCTATTGAACCAGTTACTTGCAGAGTTAGATGGTGCAGATCCGCAGCGGGGTATAGTTGTTATTGGGGCCACTAATAGAGATGAGCGCTGTTTGATCCTGAAAGCTCTTGCAAGGAAGAAGCCTATAGATCCCAGTGTAGACCTCAATGAGATTGGTCGATGGAAGGCTCATAACAATTTTAGTGGAGCTGATCTCTCTGACTGTGGCCTGTGCAGCGCAGCCCTCGAGTCCCGCCACGAACCAGCCAAGCCACGAGTCAACCCCGCCACGAACCAGTCTCGCCATGATCCCCGCTATGAACCAGCCCCACCACTAGCCGCACCGTCAAGCTTCGTCAGAAGCCAGCACCACCTCGAGCCCCAAGCCACTGCAGATACAACACTCAGCTCCAATCGCCGCAAGCCACACCGTCGCCTAGACGCCCACGATTCGCCGTTGCCGGATTGCATCGTCCCTGCACAGAAAACTACCACAGACGCCCAGAAAGACAGTCCATCCCAGAGCATTGAAGTGCCCGTCCGGCAGCCAGCAACAGACGACAAGGCCGAAGCCGGCGCTATCCATGGCCGCCGCCGGACAGGGAACAATCTGGTGGGTTTGTGCTCTCTCGAGGAGCTCGGGCTAGAGAGAGTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA Nucleolin_bd

Protein Analysis

250

Amino Acids

27.2

Weight (kDa)

8.3

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018217)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009470 RLG00000009473 RLG00000009476 RLG00000009479 RLG00000009482 RLG00000009485 RLG00000020097
rosa_multiflora	Rmu_sc0002963.1_g000020
rosa_roxburghii	Rroxscaffold_4G00309790
rosa_samantha	Rh4AG075600 Rh4CG080400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	9 cut(s)	152, 157, 343, 375, 403, 429, 508, 679, 682
AclWI	GGATC	4 cut(s)	143, 199, 233, 392
AcoI	YGGCCR	1 cut(s)	676
AcyI	GRCGYC	2 cut(s)	531, 588
AfeI	AGCGCT	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	118, 620
AluBI	AGCT	6 cut(s)	38, 215, 299, 441, 498, 727
AluI	AGCT	6 cut(s)	38, 215, 299, 441, 498, 727
Alw21I	GWGCWC	2 cut(s)	716, 729
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	4 cut(s)	143, 199, 233, 392
Ama87I	CYCGRG	4 cut(s)	335, 464, 719, 728
Aor51HI	AGCGCT	1 cut(s)	197
AoxI	GGCC	4 cut(s)	177, 316, 654, 676
ApeKI	GCWGC	4 cut(s)	154, 324, 329, 634
AspLEI	GCGC	3 cut(s)	198, 329, 668
AspS9I	GGNCC	1 cut(s)	177
AvaI	CYCGRG	4 cut(s)	335, 464, 719, 728
BaeGI	GKGCMC	1 cut(s)	627
BanII	GRGCYC	2 cut(s)	471, 729
BauI	CACGAG	1 cut(s)	363
Bbv12I	GWGCWC	2 cut(s)	716, 729
BbvI	GCAGC	4 cut(s)	166, 336, 341, 646
BccI	CCATC	4 cut(s)	90, 134, 264, 613
BceAI	ACGGC	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	4 cut(s)	425, 527, 734, 748
BfmI	CTRYAG	2 cut(s)	234, 480
BfoI	RGCGCY	2 cut(s)	199, 669
BglI	GCCNNNNNGGC	1 cut(s)	631
BisI	GCNGC	8 cut(s)	155, 325, 330, 429, 508, 635, 679, 682
BlsI	GCNGC	8 cut(s)	156, 326, 331, 430, 509, 636, 680, 683
BmeT110I	CYCGRG	4 cut(s)	335, 464, 719, 728
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	178
BmrI	ACTGGG	1 cut(s)	237
BmsI	GCATC	2 cut(s)	52, 567
BmuI	ACTGGG	1 cut(s)	237
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
BsaHI	GRCGYC	2 cut(s)	531, 588
BsaJI	CCNNGG	1 cut(s)	673
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse118I	RCCGGY	1 cut(s)	662
Bse1I	ACTGG	3 cut(s)	121, 243, 385
BseDI	CCNNGG	1 cut(s)	673
BseGI	GGATG	3 cut(s)	67, 101, 605
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	508
BseNI	ACTGG	3 cut(s)	121, 243, 385
BseRI	GAGGAG	1 cut(s)	737
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	4 cut(s)	166, 336, 341, 646
BsgI	GTGCAG	3 cut(s)	165, 343, 552
BshFI	GGCC	4 cut(s)	179, 318, 656, 678
BsiHKAI	GWGCWC	2 cut(s)	716, 729
BsiHKCI	CYCGRG	4 cut(s)	335, 464, 719, 728
BsiSI	CCGG	4 cut(s)	551, 631, 663, 685
BslFI	GGGAC	3 cut(s)	113, 325, 548
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	393
BsmFI	GGGAC	3 cut(s)	113, 325, 548
BsnI	GGCC	4 cut(s)	179, 318, 656, 678
BsoBI	CYCGRG	4 cut(s)	335, 464, 719, 728
Bsp1286I	GDGCHC	4 cut(s)	471, 627, 716, 729
Bsp143I	GATC	5 cut(s)	148, 204, 238, 301, 397
Bsp19I	CCATGG	1 cut(s)	673
BspACI	CCGC	9 cut(s)	152, 157, 343, 375, 403, 429, 508, 679, 682
BspANI	GGCC	4 cut(s)	179, 318, 656, 678
BspCNI	CTCAG	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	484
BspPI	GGATC	4 cut(s)	143, 199, 233, 392
BsrFI	RCCGGY	1 cut(s)	662
BsrI	ACTGG	3 cut(s)	121, 243, 385
BssAI	RCCGGY	1 cut(s)	662
BssECI	CCNNGG	1 cut(s)	673
BssMI	GATC	5 cut(s)	148, 204, 238, 301, 397
BssNI	GRCGYC	2 cut(s)	531, 588
BssSI	CACGAG	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	673
Bst2BI	CACGAG	1 cut(s)	363
Bst4CI	ACNGT	4 cut(s)	314, 435, 521, 602
BstACI	GRCGYC	2 cut(s)	531, 588
BstC8I	GCNNGC	4 cut(s)	455, 512, 639, 664
BstDEI	CTNAG	1 cut(s)	494
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	3 cut(s)	67, 101, 605
BstH2I	RGCGCY	2 cut(s)	199, 669
BstHHI	GCGC	3 cut(s)	198, 329, 668
BstKTI	GATC	5 cut(s)	151, 207, 241, 304, 400
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	5 cut(s)	148, 204, 238, 301, 397
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 324, 504, 631
BstSFI	CTRYAG	2 cut(s)	234, 480
BstSLI	GKGCMC	1 cut(s)	627
BstV1I	GCAGC	4 cut(s)	166, 336, 341, 646
BstX2I	RGATCY	2 cut(s)	148, 238
BstYI	RGATCY	2 cut(s)	148, 238
BsuRI	GGCC	4 cut(s)	179, 318, 656, 678
BtgI	CCRYGG	1 cut(s)	673
BtsCI	GGATG	3 cut(s)	67, 101, 605
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	2 cut(s)	250, 477
Cac8I	GCNNGC	4 cut(s)	455, 512, 639, 664
CfoI	GCGC	3 cut(s)	198, 329, 668
Cfr10I	RCCGGY	1 cut(s)	662
Cfr13I	GGNCC	1 cut(s)	177
CseI	GACGC	2 cut(s)	539, 596
CspCI	CAANNNNNGTGG	2 cut(s)	274, 309
CviAII	CATG	2 cut(s)	395, 674
DdeI	CTNAG	1 cut(s)	494
DpnI	GATC	5 cut(s)	150, 206, 240, 303, 399
DpnII	GATC	5 cut(s)	148, 204, 238, 301, 397
EaeI	YGGCCR	1 cut(s)	676
Ecl136II	GAGCTC	1 cut(s)	727
Eco130I	CCWWGG	1 cut(s)	673
Eco24I	GRGCYC	2 cut(s)	471, 729
Eco47III	AGCGCT	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	727
Eco88I	CYCGRG	4 cut(s)	335, 464, 719, 728
EcoICRI	GAGCTC	1 cut(s)	727
EcoT14I	CCWWGG	1 cut(s)	673
EcoT38I	GRGCYC	2 cut(s)	471, 729
ErhI	CCWWGG	1 cut(s)	673
FaeI	CATG	2 cut(s)	398, 677
FaiI	YATR	6 cut(s)	164, 236, 282, 396, 408, 675
FaqI	GGGAC	3 cut(s)	113, 325, 548
FatI	CATG	2 cut(s)	394, 673
FauI	CCCGC	4 cut(s)	150, 350, 382, 410
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	8 cut(s)	155, 325, 330, 429, 508, 635, 679, 682
FokI	GGATG	3 cut(s)	74, 108, 592
FriOI	GRGCYC	2 cut(s)	471, 729
Fsp4HI	GCNGC	8 cut(s)	155, 325, 330, 429, 508, 635, 679, 682
FspBI	CTAG	4 cut(s)	425, 527, 734, 748
GlaI	GCGC	3 cut(s)	197, 328, 667
GluI	GCNGC	8 cut(s)	155, 325, 330, 429, 508, 635, 679, 682
HaeII	RGCGCY	2 cut(s)	199, 669
HaeIII	GGCC	4 cut(s)	179, 318, 656, 678
HapII	CCGG	4 cut(s)	551, 631, 663, 685
HgaI	GACGC	2 cut(s)	539, 596
HhaI	GCGC	3 cut(s)	198, 329, 668
Hin1I	GRCGYC	2 cut(s)	531, 588
Hin1II	CATG	2 cut(s)	398, 677
Hin6I	GCGC	3 cut(s)	196, 327, 666
HinP1I	GCGC	3 cut(s)	196, 327, 666
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	3 cut(s)	338, 366, 539
HpaII	CCGG	4 cut(s)	551, 631, 663, 685
Hpy166II	GTNNAC	2 cut(s)	250, 370
Hpy188I	TCNGA	2 cut(s)	310, 449
Hpy188III	TCNNGA	2 cut(s)	208, 719
Hpy8I	GTNNAC	2 cut(s)	250, 370
Hpy99I	CGWCG	1 cut(s)	525
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	4 cut(s)	314, 435, 521, 602
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	9 cut(s)	11, 23, 131, 146, 221, 324, 482, 558, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 324, 504, 631
HpyF3I	CTNAG	1 cut(s)	494
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	2 cut(s)	531, 588
Hsp92II	CATG	2 cut(s)	398, 677
HspAI	GCGC	3 cut(s)	196, 327, 666
KroI	GCCGGC	1 cut(s)	662
KroNI	GCCGGC	1 cut(s)	664
Kzo9I	GATC	5 cut(s)	148, 204, 238, 301, 397
LmnI	GCTCC	3 cut(s)	296, 503, 724
Lsp1109I	GCAGC	4 cut(s)	166, 336, 341, 646
LweI	GCATC	2 cut(s)	52, 567
MaeI	CTAG	4 cut(s)	425, 527, 734, 748
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	123
MalI	GATC	5 cut(s)	150, 206, 240, 303, 399
MboI	GATC	5 cut(s)	148, 204, 238, 301, 397
MboII	GAAGA	1 cut(s)	238
MflI	RGATCY	2 cut(s)	148, 238
MhlI	GDGCHC	4 cut(s)	471, 627, 716, 729
MluCI	AATT	2 cut(s)	40, 286
MlyI	GAGTC	2 cut(s)	347, 375
MnlI	CCTC	5 cut(s)	22, 263, 344, 473, 715
MroNI	GCCGGC	1 cut(s)	662
MslI	CAYNNNNRTG	2 cut(s)	56, 620
MspA1I	CMGCKG	1 cut(s)	157
MspI	CCGG	4 cut(s)	551, 631, 663, 685
MwoI	GCNNNNNNNGC	4 cut(s)	29, 324, 504, 631
NaeI	GCCGGC	1 cut(s)	664
NcoI	CCATGG	1 cut(s)	673
NdeII	GATC	5 cut(s)	148, 204, 238, 301, 397
NgoMIV	GCCGGC	1 cut(s)	662
NlaIII	CATG	2 cut(s)	398, 677
NlaIV	GGNNCC	1 cut(s)	178
PaeR7I	CTCGAG	3 cut(s)	335, 464, 719
PcsI	WCGNNNNNNNCGW	1 cut(s)	654
PdiI	GCCGGC	1 cut(s)	664
PfeI	GAWTC	1 cut(s)	539
PkrI	GCNGC	8 cut(s)	156, 326, 331, 430, 509, 636, 680, 683
PleI	GAGTC	2 cut(s)	346, 374
PpsI	GAGTC	2 cut(s)	346, 374
Psp124BI	GAGCTC	1 cut(s)	729
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	177
PspXI	VCTCGAGB	2 cut(s)	335, 464
PstI	CTGCAG	1 cut(s)	484
PsuI	RGATCY	2 cut(s)	148, 238
RseI	CAYNNNNRTG	2 cut(s)	56, 620
SacI	GAGCTC	1 cut(s)	729
SatI	GCNGC	8 cut(s)	155, 325, 330, 429, 508, 635, 679, 682
Sau3AI	GATC	5 cut(s)	148, 204, 238, 301, 397
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	2 cut(s)	347, 375
SduI	GDGCHC	4 cut(s)	471, 627, 716, 729
SfaNI	GCATC	2 cut(s)	52, 567
SfcI	CTRYAG	2 cut(s)	234, 480
Sfr274I	CTCGAG	3 cut(s)	335, 464, 719
SlaI	CTCGAG	3 cut(s)	335, 464, 719
SmiMI	CAYNNNNRTG	2 cut(s)	56, 620
SmlI	CTYRAG	3 cut(s)	335, 464, 719
SmoI	CTYRAG	3 cut(s)	335, 464, 719
Sse9I	AATT	2 cut(s)	40, 286
SsiI	CCGC	9 cut(s)	152, 157, 343, 375, 403, 429, 508, 679, 682
SspMI	CTAG	4 cut(s)	425, 527, 734, 748
SstI	GAGCTC	1 cut(s)	729
StyI	CCWWGG	1 cut(s)	673
TaaI	ACNGT	4 cut(s)	314, 435, 521, 602
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	4 cut(s)	268, 336, 465, 720
TasI	AATT	2 cut(s)	40, 286
TauI	GCSGC	4 cut(s)	431, 510, 681, 684
TfiI	GAWTC	1 cut(s)	539
TscAI	CASTG	2 cut(s)	250, 484
TseI	GCWGC	4 cut(s)	154, 324, 329, 634
TspDTI	ATGAA	1 cut(s)	423
TspRI	CASTG	2 cut(s)	250, 484
XhoI	CTCGAG	3 cut(s)	335, 464, 719
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	4 cut(s)	425, 527, 734, 748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.