RLG00000009485

Cell division control protein 48 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018217
Physical Location & Seq
Reverse (-)
53444509 .. 53446871
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009485

Sequence Viewer

Length: 801 bp
ATGCTGATTGCAAAGGCTGTTGCAAGTGAGGCAGGAGCTAATTTTATTTACATCAAGGGCAGACAAGGGGGATGGGACGTTTTTCGGCTATTGAACCAGTTACTTGCAGAGTTAGATGGTGCAGATCCGCAGCGGGGTATAGTTGTTATTGGGGCCACTAATAGACCCGATGTGATGGACCCTGCTGCTTTACGGCCGGGAAGGTTTGGAAAACATATTTATGTTCCCCTGCCGGGTAGAGATGAGCGCTGTTTGATCCTGAAAGCTCTTGCAAGGAAGAAGCCTATAGATCCCGGTGTAGACCTCAATGAGATTGGTCGATGGAAGGCTCATAACAATTTTAGTGGAGCTGATCTCTCTGACTGTGGCCTGTGCAGCGCAGCCCTCGAGTCCCGCCACGAACCAGCCAAGCCACGAGTCAACCCCGCCACGAACCAGTCTCGCCATGATCCCCGCTATGAACCAGCCCCACCACTAGCCGCACCGTCAAGCTTCGTCAGAAGCCAGCACCACCTCGAGCCCCAAGCCACTGCAGATACAACACTCAGCTCCAATCGCCGCAAGCCACACCGTCGCCTAGACGCCCACGATTCGCCGTTGCCGGATTGCATCGTCCCTGCACAGAAAACTACCACAGACGCCCAGAAAGACAGTCCACCCCAGAGCATTGAAGTGCCCGTCCGGCAGCCAGCAACAGACGACAAGGCCGAAGCCGGCGCTATCCATGGCCGCCGCCGGACAGGGAACAATCTGGTGGGTTTGTGCTCTCTCGAGGAGCTCGGGCTAGAGAGAGTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
AAA Nucleolin_bd

Protein Analysis

267

Amino Acids

28.97

Weight (kDa)

8.84

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 29 - 77 1.9e-09 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 300
AciI CCGC 9 cut(s) 128, 133, 394, 426, 454, 480, 559, 730, 733
AclWI GGATC 4 cut(s) 119, 250, 284, 443
AcoI YGGCCR 2 cut(s) 194, 727
AcyI GRCGYC 2 cut(s) 582, 639
AfeI AGCGCT 1 cut(s) 248
AfiI CCNNNNNNNGG 2 cut(s) 134, 233
AgsI TTSAA 2 cut(s) 94, 671
AluBI AGCT 6 cut(s) 38, 266, 350, 492, 549, 778
AluI AGCT 6 cut(s) 38, 266, 350, 492, 549, 778
Alw21I GWGCWC 2 cut(s) 767, 780
Alw26I GTCTC 1 cut(s) 444
AlwI GGATC 4 cut(s) 119, 250, 284, 443
Ama87I CYCGRG 4 cut(s) 386, 515, 770, 779
Aor51HI AGCGCT 1 cut(s) 248
AoxI GGCC 5 cut(s) 153, 194, 367, 705, 727
ApeKI GCWGC 5 cut(s) 130, 185, 375, 380, 685
AspLEI GCGC 3 cut(s) 249, 380, 719
AspS9I GGNCC 2 cut(s) 153, 178
AsuC2I CCSGG 3 cut(s) 198, 234, 294
AvaI CYCGRG 4 cut(s) 386, 515, 770, 779
AvaII GGWCC 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 678
BanII GRGCYC 2 cut(s) 522, 780
BauI CACGAG 1 cut(s) 414
Bbv12I GWGCWC 2 cut(s) 767, 780
BbvI GCAGC 5 cut(s) 142, 172, 387, 392, 697
BccI CCATC 4 cut(s) 66, 110, 169, 315
BceAI ACGGC 2 cut(s) 209, 580
BcnI CCSGG 3 cut(s) 198, 234, 294
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 4 cut(s) 476, 578, 785, 799
BfmI CTRYAG 2 cut(s) 285, 531
BfoI RGCGCY 2 cut(s) 250, 720
BglI GCCNNNNNGGC 1 cut(s) 682
BisI GCNGC 9 cut(s) 131, 186, 376, 381, 480, 559, 686, 730, 733
BlsI GCNGC 9 cut(s) 132, 187, 377, 382, 481, 560, 687, 731, 734
Bme1390I CCNGG 3 cut(s) 198, 234, 294
Bme18I GGWCC 1 cut(s) 178
BmeT110I CYCGRG 4 cut(s) 386, 515, 770, 779
BmgT120I GGNCC 2 cut(s) 153, 178
BmiI GGNNCC 2 cut(s) 154, 180
BmrFI CCNGG 3 cut(s) 198, 234, 294
BmsI GCATC 1 cut(s) 618
BplI GAGNNNNNCTC 2 cut(s) 339, 371
BpuMI CCSGG 3 cut(s) 198, 234, 294
BsaHI GRCGYC 2 cut(s) 582, 639
BsaJI CCNNGG 1 cut(s) 724
Bsc4I CCNNNNNNNGG 2 cut(s) 134, 233
Bse118I RCCGGY 1 cut(s) 713
Bse1I ACTGG 2 cut(s) 97, 436
BseDI CCNNGG 1 cut(s) 724
BseGI GGATG 1 cut(s) 77
BseLI CCNNNNNNNGG 2 cut(s) 134, 233
BseMII CTCAG 1 cut(s) 559
BseNI ACTGG 2 cut(s) 97, 436
BseRI GAGGAG 1 cut(s) 788
BseSI GKGCMC 1 cut(s) 678
BseX3I CGGCCG 1 cut(s) 194
BseXI GCAGC 5 cut(s) 142, 172, 387, 392, 697
BsgI GTGCAG 3 cut(s) 141, 394, 603
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 5 cut(s) 155, 196, 369, 707, 729
BsiEI CGRYCG 1 cut(s) 197
BsiHKAI GWGCWC 2 cut(s) 767, 780
BsiHKCI CYCGRG 4 cut(s) 386, 515, 770, 779
BsiSI CCGG 7 cut(s) 197, 233, 294, 602, 682, 714, 736
BslFI GGGAC 3 cut(s) 89, 376, 599
BslI CCNNNNNNNGG 2 cut(s) 134, 233
BsmAI GTCTC 1 cut(s) 444
BsmFI GGGAC 3 cut(s) 89, 376, 599
BsnI GGCC 5 cut(s) 155, 196, 369, 707, 729
BsoBI CYCGRG 4 cut(s) 386, 515, 770, 779
Bsp1286I GDGCHC 4 cut(s) 522, 678, 767, 780
Bsp143I GATC 5 cut(s) 124, 255, 289, 352, 448
Bsp19I CCATGG 1 cut(s) 724
BspACI CCGC 9 cut(s) 128, 133, 394, 426, 454, 480, 559, 730, 733
BspANI GGCC 5 cut(s) 155, 196, 369, 707, 729
BspCNI CTCAG 1 cut(s) 558
BspLI GGNNCC 2 cut(s) 154, 180
BspMAI CTGCAG 1 cut(s) 535
BspPI GGATC 4 cut(s) 119, 250, 284, 443
BsrFI RCCGGY 1 cut(s) 713
BsrI ACTGG 2 cut(s) 97, 436
BssAI RCCGGY 1 cut(s) 713
BssECI CCNNGG 1 cut(s) 724
BssMI GATC 5 cut(s) 124, 255, 289, 352, 448
BssNI GRCGYC 2 cut(s) 582, 639
BssSI CACGAG 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 724
Bst2BI CACGAG 1 cut(s) 414
Bst4CI ACNGT 4 cut(s) 365, 486, 572, 653
BstACI GRCGYC 2 cut(s) 582, 639
BstC8I GCNNGC 4 cut(s) 506, 563, 690, 715
BstDEI CTNAG 1 cut(s) 545
BstDSI CCRYGG 1 cut(s) 724
BstF5I GGATG 1 cut(s) 77
BstH2I RGCGCY 2 cut(s) 250, 720
BstHHI GCGC 3 cut(s) 249, 380, 719
BstKTI GATC 5 cut(s) 127, 258, 292, 355, 451
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 5 cut(s) 124, 255, 289, 352, 448
BstMCI CGRYCG 1 cut(s) 197
BstMWI GCNNNNNNNGC 4 cut(s) 29, 375, 555, 682
BstSCI CCNGG 3 cut(s) 196, 232, 292
BstSFI CTRYAG 2 cut(s) 285, 531
BstSLI GKGCMC 1 cut(s) 678
BstV1I GCAGC 5 cut(s) 142, 172, 387, 392, 697
BstX2I RGATCY 2 cut(s) 124, 289
BstYI RGATCY 2 cut(s) 124, 289
BstZI CGGCCG 1 cut(s) 194
BsuRI GGCC 5 cut(s) 155, 196, 369, 707, 729
BtgI CCRYGG 1 cut(s) 724
BtsCI GGATG 1 cut(s) 77
BtsI GCAGTG 1 cut(s) 528
BtsIMutI CAGTG 1 cut(s) 528
Cac8I GCNNGC 4 cut(s) 506, 563, 690, 715
CfoI GCGC 3 cut(s) 249, 380, 719
Cfr10I RCCGGY 1 cut(s) 713
Cfr13I GGNCC 2 cut(s) 153, 178
CseI GACGC 2 cut(s) 590, 647
CspCI CAANNNNNGTGG 2 cut(s) 325, 360
CviAII CATG 2 cut(s) 446, 725
DdeI CTNAG 1 cut(s) 545
DpnI GATC 5 cut(s) 126, 257, 291, 354, 450
DpnII GATC 5 cut(s) 124, 255, 289, 352, 448
EaeI YGGCCR 2 cut(s) 194, 727
EagI CGGCCG 1 cut(s) 194
Ecl136II GAGCTC 1 cut(s) 778
EclXI CGGCCG 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 724
Eco24I GRGCYC 2 cut(s) 522, 780
Eco47I GGWCC 1 cut(s) 178
Eco47III AGCGCT 1 cut(s) 248
Eco52I CGGCCG 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 778
Eco88I CYCGRG 4 cut(s) 386, 515, 770, 779
EcoICRI GAGCTC 1 cut(s) 778
EcoT14I CCWWGG 1 cut(s) 724
EcoT38I GRGCYC 2 cut(s) 522, 780
ErhI CCWWGG 1 cut(s) 724
FaeI CATG 2 cut(s) 449, 728
FaiI YATR 8 cut(s) 140, 216, 222, 287, 333, 447, 459, 726
FaqI GGGAC 3 cut(s) 89, 376, 599
FatI CATG 2 cut(s) 445, 724
FauI CCCGC 4 cut(s) 126, 401, 433, 461
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 9 cut(s) 131, 186, 376, 381, 480, 559, 686, 730, 733
FokI GGATG 1 cut(s) 84
FriOI GRGCYC 2 cut(s) 522, 780
Fsp4HI GCNGC 9 cut(s) 131, 186, 376, 381, 480, 559, 686, 730, 733
FspBI CTAG 4 cut(s) 476, 578, 785, 799
GlaI GCGC 3 cut(s) 248, 379, 718
GluI GCNGC 9 cut(s) 131, 186, 376, 381, 480, 559, 686, 730, 733
HaeII RGCGCY 2 cut(s) 250, 720
HaeIII GGCC 5 cut(s) 155, 196, 369, 707, 729
HapII CCGG 7 cut(s) 197, 233, 294, 602, 682, 714, 736
HgaI GACGC 2 cut(s) 590, 647
HhaI GCGC 3 cut(s) 249, 380, 719
Hin1I GRCGYC 2 cut(s) 582, 639
Hin1II CATG 2 cut(s) 449, 728
Hin6I GCGC 3 cut(s) 247, 378, 717
HinP1I GCGC 3 cut(s) 247, 378, 717
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 490
HinfI GANTC 3 cut(s) 389, 417, 590
HpaII CCGG 7 cut(s) 197, 233, 294, 602, 682, 714, 736
Hpy166II GTNNAC 3 cut(s) 301, 421, 656
Hpy188I TCNGA 2 cut(s) 361, 500
Hpy188III TCNNGA 2 cut(s) 259, 770
Hpy8I GTNNAC 3 cut(s) 301, 421, 656
Hpy99I CGWCG 1 cut(s) 576
HpyAV CCTTC 2 cut(s) 195, 319
HpyCH4III ACNGT 4 cut(s) 365, 486, 572, 653
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 9 cut(s) 11, 23, 107, 122, 272, 375, 533, 609, 620
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 375, 555, 682
HpyF3I CTNAG 1 cut(s) 545
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 2 cut(s) 582, 639
Hsp92II CATG 2 cut(s) 449, 728
HspAI GCGC 3 cut(s) 247, 378, 717
KroI GCCGGC 1 cut(s) 713
KroNI GCCGGC 1 cut(s) 715
Kzo9I GATC 5 cut(s) 124, 255, 289, 352, 448
LmnI GCTCC 4 cut(s) 35, 347, 554, 775
Lsp1109I GCAGC 5 cut(s) 142, 172, 387, 392, 697
LweI GCATC 1 cut(s) 618
MaeI CTAG 4 cut(s) 476, 578, 785, 799
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 99
MalI GATC 5 cut(s) 126, 257, 291, 354, 450
MboI GATC 5 cut(s) 124, 255, 289, 352, 448
MboII GAAGA 1 cut(s) 289
MflI RGATCY 2 cut(s) 124, 289
MhlI GDGCHC 4 cut(s) 522, 678, 767, 780
MluCI AATT 2 cut(s) 40, 337
MlyI GAGTC 2 cut(s) 398, 426
MnlI CCTC 5 cut(s) 22, 314, 395, 524, 766
MroNI GCCGGC 1 cut(s) 713
MslI CAYNNNNRTG 2 cut(s) 219, 671
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 7 cut(s) 197, 233, 294, 602, 682, 714, 736
MspR9I CCNGG 3 cut(s) 198, 234, 294
MwoI GCNNNNNNNGC 4 cut(s) 29, 375, 555, 682
NaeI GCCGGC 1 cut(s) 715
NciI CCSGG 3 cut(s) 198, 234, 294
NcoI CCATGG 1 cut(s) 724
NdeII GATC 5 cut(s) 124, 255, 289, 352, 448
NgoMIV GCCGGC 1 cut(s) 713
NlaIII CATG 2 cut(s) 449, 728
NlaIV GGNNCC 2 cut(s) 154, 180
PaeR7I CTCGAG 3 cut(s) 386, 515, 770
PcsI WCGNNNNNNNCGW 1 cut(s) 705
PdiI GCCGGC 1 cut(s) 715
PfeI GAWTC 1 cut(s) 590
PkrI GCNGC 9 cut(s) 132, 187, 377, 382, 481, 560, 687, 731, 734
PleI GAGTC 2 cut(s) 397, 425
PpsI GAGTC 2 cut(s) 397, 425
Psp124BI GAGCTC 1 cut(s) 780
PspN4I GGNNCC 2 cut(s) 154, 180
PspPI GGNCC 2 cut(s) 153, 178
PspXI VCTCGAGB 2 cut(s) 386, 515
PstI CTGCAG 1 cut(s) 535
PsuI RGATCY 2 cut(s) 124, 289
RseI CAYNNNNRTG 2 cut(s) 219, 671
SacI GAGCTC 1 cut(s) 780
SatI GCNGC 9 cut(s) 131, 186, 376, 381, 480, 559, 686, 730, 733
Sau3AI GATC 5 cut(s) 124, 255, 289, 352, 448
Sau96I GGNCC 2 cut(s) 153, 178
SchI GAGTC 2 cut(s) 398, 426
ScrFI CCNGG 3 cut(s) 198, 234, 294
SduI GDGCHC 4 cut(s) 522, 678, 767, 780
SfaNI GCATC 1 cut(s) 618
SfcI CTRYAG 2 cut(s) 285, 531
Sfr274I CTCGAG 3 cut(s) 386, 515, 770
SinI GGWCC 1 cut(s) 178
SlaI CTCGAG 3 cut(s) 386, 515, 770
SmiMI CAYNNNNRTG 2 cut(s) 219, 671
SmlI CTYRAG 3 cut(s) 386, 515, 770
SmoI CTYRAG 3 cut(s) 386, 515, 770
Sse9I AATT 2 cut(s) 40, 337
SsiI CCGC 9 cut(s) 128, 133, 394, 426, 454, 480, 559, 730, 733
SspMI CTAG 4 cut(s) 476, 578, 785, 799
SstI GAGCTC 1 cut(s) 780
StyD4I CCNGG 3 cut(s) 196, 232, 292
StyI CCWWGG 1 cut(s) 724
TaaI ACNGT 4 cut(s) 365, 486, 572, 653
TaiI ACGT 1 cut(s) 81
TaqI TCGA 4 cut(s) 319, 387, 516, 771
TasI AATT 2 cut(s) 40, 337
TauI GCSGC 4 cut(s) 482, 561, 732, 735
TfiI GAWTC 1 cut(s) 590
TscAI CASTG 1 cut(s) 535
TseI GCWGC 5 cut(s) 130, 185, 375, 380, 685
TspDTI ATGAA 1 cut(s) 474
TspRI CASTG 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 178
XhoI CTCGAG 3 cut(s) 386, 515, 770
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 4 cut(s) 476, 578, 785, 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.