Rroxscaffold_4G00309790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0018217
Physical Location & Seq
Reverse (-)
31646348 .. 31649443
3096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309790.1

Sequence Viewer

Length: 306 bp
ATGAGCCGCACCGTCAAGCTTCGTTACAAGCCGAACCGCCTCGAGCGCCAAGCCACTGCAGATCCGGCGCCTAAACCCGATTGCCGCAAGCTGCGCGATCGCCTAGACGCTCACAAAACGCGGCGGATCGCACCATCCCCACGAAGAACTACCACGATGCCCGAAAAGTGCGCCCATGACATTAAACTTATCAACTGTGCAGATTCTTTTGCACTGCAATCGGTGCTTCCGAACGTGATGAAATTTCTTCTAACAGTTGGGACATGGTACGCTGCAAAGAAAAAACAGAGCAAAAAAAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.65

Weight (kDa)

10.58

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 67
AccII CGCG 2 cut(s) 96, 121
AciI CCGC 5 cut(s) 7, 37, 85, 121, 124
AclWI GGATC 2 cut(s) 56, 134
AcsI RAATTY 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 1 cut(s) 269
AluBI AGCT 2 cut(s) 19, 91
AluI AGCT 2 cut(s) 19, 91
AlwI GGATC 2 cut(s) 56, 134
Ama87I CYCGRG 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 91, 272
ApoI RAATTY 1 cut(s) 242
AsiSI GCGATCGC 1 cut(s) 100
AspLEI GCGC 4 cut(s) 48, 70, 96, 173
AvaI CYCGRG 1 cut(s) 41
BanI GGYRCC 1 cut(s) 67
BbvI GCAGC 2 cut(s) 78, 259
BccI CCATC 1 cut(s) 142
BcgI CGANNNNNNTGC 2 cut(s) 201, 235
BfaI CTAG 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 57
BfoI RGCGCY 2 cut(s) 49, 71
BisI GCNGC 5 cut(s) 7, 85, 92, 122, 273
BlsI GCNGC 5 cut(s) 8, 86, 93, 123, 274
BmeT110I CYCGRG 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 69
BmsI GCATC 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 68
BseGI GGATG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 78, 259
BsgI GTGCAG 1 cut(s) 219
Bsh1236I CGCG 2 cut(s) 96, 121
Bsh1285I CGRYCG 1 cut(s) 100
BshNI GGYRCC 1 cut(s) 67
BsiEI CGRYCG 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 274
BsoBI CYCGRG 1 cut(s) 41
Bsp143I GATC 3 cut(s) 61, 97, 126
BspACI CCGC 5 cut(s) 7, 37, 85, 121, 124
BspFNI CGCG 2 cut(s) 96, 121
BspLI GGNNCC 1 cut(s) 69
BspMAI CTGCAG 1 cut(s) 61
BspPI GGATC 2 cut(s) 56, 134
BspT107I GGYRCC 1 cut(s) 67
BssMI GATC 3 cut(s) 61, 97, 126
BssNI GRCGYC 1 cut(s) 68
Bst4CI ACNGT 3 cut(s) 13, 197, 256
BstACI GRCGYC 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 89
BstF5I GGATG 1 cut(s) 134
BstFNI CGCG 2 cut(s) 96, 121
BstH2I RGCGCY 2 cut(s) 49, 71
BstHHI GCGC 4 cut(s) 48, 70, 96, 173
BstKTI GATC 3 cut(s) 64, 100, 129
BstMBI GATC 3 cut(s) 61, 97, 126
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 4 cut(s) 45, 65, 93, 223
BstSFI CTRYAG 1 cut(s) 57
BstUI CGCG 2 cut(s) 96, 121
BstV1I GCAGC 2 cut(s) 78, 259
BstX2I RGATCY 1 cut(s) 61
BstYI RGATCY 1 cut(s) 61
BtsCI GGATG 1 cut(s) 134
BtsI GCAGTG 2 cut(s) 54, 212
BtsIMutI CAGTG 2 cut(s) 54, 212
Cac8I GCNNGC 1 cut(s) 89
CfoI GCGC 4 cut(s) 48, 70, 96, 173
CseI GACGC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 176, 264
CviJI RGCY 5 cut(s) 6, 19, 31, 53, 91
CviKI_1 RGCY 5 cut(s) 6, 19, 31, 53, 91
CviQI GTAC 1 cut(s) 268
DinI GGCGCC 1 cut(s) 69
DpnI GATC 3 cut(s) 63, 99, 128
DpnII GATC 3 cut(s) 61, 97, 126
EciI GGCGGA 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 41
EgeI GGCGCC 1 cut(s) 69
EheI GGCGCC 1 cut(s) 69
FaeI CATG 2 cut(s) 179, 267
FaiI YATR 2 cut(s) 177, 265
FaqI GGGAC 1 cut(s) 274
FatI CATG 2 cut(s) 175, 263
Fnu4HI GCNGC 5 cut(s) 7, 85, 92, 122, 273
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 5 cut(s) 7, 85, 92, 122, 273
FspBI CTAG 1 cut(s) 104
GlaI GCGC 4 cut(s) 47, 69, 95, 172
GluI GCNGC 5 cut(s) 7, 85, 92, 122, 273
HaeII RGCGCY 2 cut(s) 49, 71
HapII CCGG 1 cut(s) 65
HgaI GACGC 1 cut(s) 116
HhaI GCGC 4 cut(s) 48, 70, 96, 173
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 2 cut(s) 179, 267
Hin6I GCGC 4 cut(s) 46, 68, 94, 171
HinP1I GCGC 4 cut(s) 46, 68, 94, 171
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 1 cut(s) 203
HpaII CCGG 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 231
HpyCH4III ACNGT 3 cut(s) 13, 197, 256
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 5 cut(s) 59, 200, 212, 217, 275
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 65, 93, 223
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 2 cut(s) 179, 267
HspAI GCGC 4 cut(s) 46, 68, 94, 171
KasI GGCGCC 1 cut(s) 67
Kzo9I GATC 3 cut(s) 61, 97, 126
LpnPI CCDG 1 cut(s) 78
Lsp1109I GCAGC 2 cut(s) 78, 259
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 104
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 1 cut(s) 23
MalI GATC 3 cut(s) 63, 99, 128
MboI GATC 3 cut(s) 61, 97, 126
MboII GAAGA 2 cut(s) 156, 239
MflI RGATCY 1 cut(s) 61
MluCI AATT 1 cut(s) 242
Mly113I GGCGCC 1 cut(s) 68
MnlI CCTC 1 cut(s) 50
MseI TTAA 1 cut(s) 183
MspI CCGG 1 cut(s) 65
MvnI CGCG 2 cut(s) 96, 121
MwoI GCNNNNNNNGC 4 cut(s) 45, 65, 93, 223
NarI GGCGCC 1 cut(s) 68
NdeII GATC 3 cut(s) 61, 97, 126
NlaIII CATG 2 cut(s) 179, 267
NlaIV GGNNCC 1 cut(s) 69
PaeR7I CTCGAG 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 5 cut(s) 8, 86, 93, 123, 274
Ple19I CGATCG 1 cut(s) 100
PluTI GGCGCC 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 69
PspXI VCTCGAGB 1 cut(s) 41
PstI CTGCAG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 61
PvuI CGATCG 1 cut(s) 100
RgaI GCGATCGC 1 cut(s) 100
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 5 cut(s) 7, 85, 92, 122, 273
Sau3AI GATC 3 cut(s) 61, 97, 126
SetI ASST 3 cut(s) 21, 93, 237
SfaAI GCGATCGC 1 cut(s) 100
SfaNI GCATC 1 cut(s) 147
SfcI CTRYAG 1 cut(s) 57
SfoI GGCGCC 1 cut(s) 69
Sfr274I CTCGAG 1 cut(s) 41
SgfI GCGATCGC 1 cut(s) 100
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 242
SsiI CCGC 5 cut(s) 7, 37, 85, 121, 124
SspDI GGCGCC 1 cut(s) 67
SspMI CTAG 1 cut(s) 104
TaaI ACNGT 3 cut(s) 13, 197, 256
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 42
TasI AATT 1 cut(s) 242
TauI GCSGC 3 cut(s) 9, 87, 124
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 2 cut(s) 61, 219
TseI GCWGC 2 cut(s) 91, 272
TspDTI ATGAA 1 cut(s) 254
TspRI CASTG 2 cut(s) 61, 219
XapI RAATTY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 41
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.