Rh4AG075600

Cell division control protein 48 homolog C-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0018217
Physical Location & Seq
Forward (+)
15427826 .. 15431130
3305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG075600.1

Sequence Viewer

Length: 603 bp
ATGATTTTTCCAAATCTGAAGGTGGATGCTTTGACAACAAAACAGGGCAGACAAGGGGGATGGGACGTTGTTCGGCTATTGAACCAGTTACTTGCAGAGTCAGATGGTGCAGATCCGCAGCGGGGTATATTTGTTATTGGGGCCACTAATAGACCCGATGTGATTGATCCTGCTGTTTTACGGCCGGGAAGGTTTGGTAAACATATTTATGTTCCCCTGCTGGGTAGAGATGAGCGCTGTTTGATCCTGAAAGCTCTTAAAAGGAAGAAGCCTATAGATCCCAGTGTAGACCTCAACGAGATTGGAAGCCAAAAAAAGAAGAGGGAAGGTGTTGGAAAATACCCTCAGCTCATCCAAACTTGTTCTGTTGTTCATATATTTTTCATTACGCGCATCATGAACGAAGCTGCAATGGCTGCTCTTGAAGAAAAATCAACATCAACCGATGAGAGTGTGATTTCATATCCAGAGACTATCAAAAAGTGTCACCTAGAACAATCACTTGCTAGAATCACACCATCTGTAACAGATAAGCAAATTGAGCGATACCTGAAATTTGGAAAAGGACAGGATGACAACTTTGGTAATCATGAAGCAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
AAA Nucleolin_bd

Protein Analysis

200

Amino Acids

22.38

Weight (kDa)

9.1

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 8 - 73 5.5e-11 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 288
AccII CGCG 1 cut(s) 391
AciI CCGC 2 cut(s) 116, 121
AclWI GGATC 4 cut(s) 107, 161, 238, 272
AcoI YGGCCR 1 cut(s) 182
AcsI RAATTY 1 cut(s) 554
AcuI CTGAAG 1 cut(s) 38
AfeI AGCGCT 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 122, 221
AgsI TTSAA 2 cut(s) 82, 425
AluBI AGCT 3 cut(s) 254, 349, 407
AluI AGCT 3 cut(s) 254, 349, 407
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 4 cut(s) 107, 161, 238, 272
Aor51HI AGCGCT 1 cut(s) 236
AoxI GGCC 2 cut(s) 141, 182
ApeKI GCWGC 3 cut(s) 118, 407, 416
ApoI RAATTY 1 cut(s) 554
AspLEI GCGC 2 cut(s) 237, 393
AspS9I GGNCC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 479
BbvCI CCTCAGC 1 cut(s) 345
BbvI GCAGC 3 cut(s) 130, 394, 403
BccI CCATC 3 cut(s) 54, 98, 526
BceAI ACGGC 1 cut(s) 197
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 464
BfaI CTAG 2 cut(s) 491, 507
BfmI CTRYAG 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 3 cut(s) 119, 408, 417
BlsI GCNGC 3 cut(s) 120, 409, 418
Bme1390I CCNGG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 186
BmrI ACTGGG 1 cut(s) 276
BmsI GCATC 2 cut(s) 16, 402
BmuI ACTGGG 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 221
Bse1I ACTGG 2 cut(s) 85, 282
Bse3DI GCAATG 1 cut(s) 417
BseGI GGATG 4 cut(s) 31, 65, 351, 577
BseLI CCNNNNNNNGG 2 cut(s) 122, 221
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 2 cut(s) 85, 282
BseX3I CGGCCG 1 cut(s) 182
BseXI GCAGC 3 cut(s) 130, 394, 403
BseYI CCCAGC 1 cut(s) 220
BsgI GTGCAG 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 391
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 2 cut(s) 143, 184
BsiEI CGRYCG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 122, 221
BsmAI GTCTC 1 cut(s) 464
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 2 cut(s) 143, 184
Bsp143I GATC 4 cut(s) 112, 166, 243, 277
BspACI CCGC 2 cut(s) 116, 121
BspANI GGCC 2 cut(s) 143, 184
BspCNI CTCAG 1 cut(s) 358
BspFNI CGCG 1 cut(s) 391
BspHI TCATGA 2 cut(s) 396, 589
BspLI GGNNCC 1 cut(s) 142
BspPI GGATC 4 cut(s) 107, 161, 238, 272
BsrDI GCAATG 1 cut(s) 417
BsrI ACTGG 2 cut(s) 85, 282
BssMI GATC 4 cut(s) 112, 166, 243, 277
Bst6I CTCTTC 1 cut(s) 314
BstAPI GCANNNNNTGC 1 cut(s) 416
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 4 cut(s) 31, 65, 351, 577
BstFNI CGCG 1 cut(s) 391
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 237, 393
BstKTI GATC 4 cut(s) 115, 169, 246, 280
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 4 cut(s) 112, 166, 243, 277
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 3 cut(s) 413, 416, 541
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 273
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 3 cut(s) 130, 394, 403
BstX2I RGATCY 2 cut(s) 112, 277
BstYI RGATCY 2 cut(s) 112, 277
BstZI CGGCCG 1 cut(s) 182
BsuRI GGCC 2 cut(s) 143, 184
BtsCI GGATG 4 cut(s) 31, 65, 351, 577
BtsIMutI CAGTG 1 cut(s) 289
CciI TCATGA 2 cut(s) 396, 589
CfoI GCGC 2 cut(s) 237, 393
Cfr13I GGNCC 1 cut(s) 141
CviAII CATG 2 cut(s) 397, 590
CviJI RGCY 9 cut(s) 76, 143, 184, 254, 271, 309, 349, 407, 416
CviKI_1 RGCY 9 cut(s) 76, 143, 184, 254, 271, 309, 349, 407, 416
DdeI CTNAG 1 cut(s) 345
DpnI GATC 4 cut(s) 114, 168, 245, 279
DpnII GATC 4 cut(s) 112, 166, 243, 277
EaeI YGGCCR 1 cut(s) 182
EagI CGGCCG 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
EclXI CGGCCG 1 cut(s) 182
Eco47III AGCGCT 1 cut(s) 236
Eco52I CGGCCG 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 38
FaeI CATG 2 cut(s) 400, 593
FaiI YATR 9 cut(s) 128, 204, 210, 275, 375, 377, 398, 463, 591
FaqI GGGAC 1 cut(s) 77
FatI CATG 2 cut(s) 396, 589
FauI CCCGC 1 cut(s) 114
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 3 cut(s) 119, 408, 417
FokI GGATG 4 cut(s) 38, 72, 338, 584
Fsp4HI GCNGC 3 cut(s) 119, 408, 417
FspBI CTAG 2 cut(s) 491, 507
GlaI GCGC 2 cut(s) 236, 392
GluI GCNGC 3 cut(s) 119, 408, 417
GsaI CCCAGC 1 cut(s) 224
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 2 cut(s) 143, 184
HapII CCGG 1 cut(s) 185
HhaI GCGC 2 cut(s) 237, 393
Hin1II CATG 2 cut(s) 400, 593
Hin6I GCGC 2 cut(s) 235, 391
HinP1I GCGC 2 cut(s) 235, 391
HinfI GANTC 2 cut(s) 98, 510
HpaII CCGG 1 cut(s) 185
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 2 cut(s) 200, 289
Hpy188I TCNGA 2 cut(s) 18, 103
Hpy188III TCNNGA 5 cut(s) 247, 397, 422, 467, 590
Hpy8I GTNNAC 2 cut(s) 200, 289
HpyAV CCTTC 3 cut(s) 13, 183, 320
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 3 cut(s) 95, 110, 410
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 416, 541
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 1 cut(s) 66
Hsp92II CATG 2 cut(s) 400, 593
HspAI GCGC 2 cut(s) 235, 391
Kzo9I GATC 4 cut(s) 112, 166, 243, 277
Lsp1109I GCAGC 3 cut(s) 130, 394, 403
LweI GCATC 2 cut(s) 16, 402
MaeI CTAG 2 cut(s) 491, 507
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 3 cut(s) 87, 485, 523
MalI GATC 4 cut(s) 114, 168, 245, 279
MboI GATC 4 cut(s) 112, 166, 243, 277
MboII GAAGA 3 cut(s) 277, 331, 437
MflI RGATCY 2 cut(s) 112, 277
MluCI AATT 3 cut(s) 537, 554, 597
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 3 cut(s) 302, 315, 354
MseI TTAA 2 cut(s) 258, 601
MslI CAYNNNNRTG 1 cut(s) 207
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 186
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 3 cut(s) 413, 416, 541
NciI CCSGG 1 cut(s) 186
NdeII GATC 4 cut(s) 112, 166, 243, 277
NlaIII CATG 2 cut(s) 400, 593
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 485
PagI TCATGA 2 cut(s) 396, 589
PfeI GAWTC 1 cut(s) 510
PkrI GCNGC 3 cut(s) 120, 409, 418
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 141
PsuI RGATCY 2 cut(s) 112, 277
RseI CAYNNNNRTG 1 cut(s) 207
SaqAI TTAA 2 cut(s) 258, 601
SatI GCNGC 3 cut(s) 119, 408, 417
Sau3AI GATC 4 cut(s) 112, 166, 243, 277
Sau96I GGNCC 1 cut(s) 141
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 186
SfaNI GCATC 2 cut(s) 16, 402
SfcI CTRYAG 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 207
Sse9I AATT 3 cut(s) 537, 554, 597
SsiI CCGC 2 cut(s) 116, 121
SspMI CTAG 2 cut(s) 491, 507
StyD4I CCNGG 1 cut(s) 184
TaiI ACGT 1 cut(s) 69
TasI AATT 3 cut(s) 537, 554, 597
TfiI GAWTC 1 cut(s) 510
Tru1I TTAA 2 cut(s) 258, 601
Tru9I TTAA 2 cut(s) 258, 601
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 3 cut(s) 118, 407, 416
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 4 cut(s) 362, 373, 413, 450
TspRI CASTG 1 cut(s) 289
XapI RAATTY 1 cut(s) 554
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 2 cut(s) 491, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.