RLG00000020097

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018217
Physical Location & Seq
Forward (+)
60959030 .. 60960676
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020097

Sequence Viewer

Length: 597 bp
ATGCACCAGCCCCCTCCACAAGCCACACCATCAAGCTTCGGCACAAGTCAGCACCGCCTTGAACCCCAAGCCACTGCAGATACAGCGCCCAGTCCCGGTTGCCGCAAGTCGCACCATCGCCTATACGCCCACGATTCGCCGCCGCAGGATCGCGCCATCCCTACACAGAAAACTGCCACAACTCCCAGAAAAGCAGCCCACGTTCGCCATCAAAACCAGTCTGCCAAAACCACAAGCCAGAGCCACCTCCTCTCCCGATCTCAGCCCAGGGCATTGAAGTGCCCGTCCGACAGCCAGCAACAAACGACGCGGCCGAAGCCGACGCTATCCATGGTCGCGGCCGGACAGGGAACAATCTGCACCACCAAACAACTCCGCTACCTACGCCTCCATCAAAGCCATCACATGTGCGTTGCCCCTCGACCCACCATGTTGCTGTTGATCCCACATGCCACAACGCCCAACAGACTAAGATCCGGCAGTGATGCCGTCAAACTCCAAGCAAAGAGAGAAACTGAGAACAACTATACGCAAGTCTTTGAGGCCCGTCCAACATTAGCCCTGACATCATGCGACCAAGGCCGACATAGATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.96

Weight (kDa)

10.58

Isoelectric Point (pI)

63.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 153, 310, 338
AciI CCGC 7 cut(s) 55, 103, 140, 143, 310, 338, 376
AclWI GGATC 3 cut(s) 156, 436, 468
AcoI YGGCCR 2 cut(s) 311, 339
AfiI CCNNNNNNNGG 1 cut(s) 95
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 2 cut(s) 62, 277
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
AlwI GGATC 3 cut(s) 156, 436, 468
AoxI GGCC 4 cut(s) 311, 339, 543, 580
ApeKI GCWGC 1 cut(s) 194
AspLEI GCGC 2 cut(s) 88, 155
AspS9I GGNCC 1 cut(s) 544
AsuC2I CCSGG 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 206
BccI CCATC 6 cut(s) 37, 123, 164, 216, 399, 408
BceAI ACGGC 1 cut(s) 473
BcgI CGANNNNNNTGC 1 cut(s) 573
BciT130I CCWGG 1 cut(s) 268
BcnI CCSGG 1 cut(s) 96
BfaI CTAG 1 cut(s) 595
BfmI CTRYAG 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 89
BisI GCNGC 6 cut(s) 103, 140, 143, 195, 311, 339
BlsI GCNGC 6 cut(s) 104, 141, 144, 196, 312, 340
Bme1390I CCNGG 2 cut(s) 96, 268
BmgT120I GGNCC 1 cut(s) 544
BmrFI CCNGG 2 cut(s) 96, 268
BmrI ACTGGG 1 cut(s) 84
BmsI GCATC 2 cut(s) 475, 581
BmuI ACTGGG 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 96
BsaJI CCNNGG 4 cut(s) 266, 267, 330, 577
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse1I ACTGG 2 cut(s) 90, 217
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 4 cut(s) 266, 267, 330, 577
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 2 cut(s) 275, 507
BseNI ACTGG 2 cut(s) 90, 217
BseRI GAGGAG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 284
BseX3I CGGCCG 2 cut(s) 311, 339
BseXI GCAGC 1 cut(s) 206
BsgI GTGCAG 1 cut(s) 343
Bsh1236I CGCG 3 cut(s) 153, 310, 338
Bsh1285I CGRYCG 2 cut(s) 314, 342
BshFI GGCC 4 cut(s) 313, 341, 545, 582
BsiEI CGRYCG 2 cut(s) 314, 342
BsiSI CCGG 3 cut(s) 96, 342, 477
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 4 cut(s) 313, 341, 545, 582
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 4 cut(s) 148, 257, 441, 473
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 7 cut(s) 55, 103, 140, 143, 310, 338, 376
BspANI GGCC 4 cut(s) 313, 341, 545, 582
BspCNI CTCAG 2 cut(s) 274, 508
BspFNI CGCG 3 cut(s) 153, 310, 338
BspMAI CTGCAG 1 cut(s) 79
BspPI GGATC 3 cut(s) 156, 436, 468
BsrI ACTGG 2 cut(s) 90, 217
BssECI CCNNGG 4 cut(s) 266, 267, 330, 577
BssMI GATC 4 cut(s) 148, 257, 441, 473
BssT1I CCWWGG 2 cut(s) 330, 577
Bst2UI CCWGG 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 261, 470, 516
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 3 cut(s) 153, 310, 338
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 2 cut(s) 88, 155
BstKTI GATC 4 cut(s) 151, 260, 444, 476
BstMBI GATC 4 cut(s) 148, 257, 441, 473
BstMCI CGRYCG 2 cut(s) 314, 342
BstMWI GCNNNNNNNGC 4 cut(s) 83, 316, 384, 579
BstNI CCWGG 1 cut(s) 268
BstNSI RCATGY 2 cut(s) 409, 452
BstSCI CCNGG 2 cut(s) 94, 266
BstSFI CTRYAG 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 284
BstUI CGCG 3 cut(s) 153, 310, 338
BstV1I GCAGC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 473
BstYI RGATCY 1 cut(s) 473
BstZI CGGCCG 2 cut(s) 311, 339
BsuRI GGCC 4 cut(s) 313, 341, 545, 582
BtgI CCRYGG 1 cut(s) 330
BtgZI GCGATG 1 cut(s) 101
BtsCI GGATG 1 cut(s) 156
BtsI GCAGTG 2 cut(s) 72, 487
BtsIMutI CAGTG 2 cut(s) 72, 487
Cac8I GCNNGC 1 cut(s) 296
CfoI GCGC 2 cut(s) 88, 155
Cfr13I GGNCC 1 cut(s) 544
CseI GACGC 2 cut(s) 316, 331
CviAII CATG 5 cut(s) 331, 406, 430, 449, 570
DdeI CTNAG 3 cut(s) 261, 470, 516
DpnI GATC 4 cut(s) 150, 259, 443, 475
DpnII GATC 4 cut(s) 148, 257, 441, 473
EaeI YGGCCR 2 cut(s) 311, 339
EagI CGGCCG 2 cut(s) 311, 339
EclXI CGGCCG 2 cut(s) 311, 339
Eco130I CCWWGG 2 cut(s) 330, 577
Eco52I CGGCCG 2 cut(s) 311, 339
EcoRII CCWGG 1 cut(s) 266
EcoT14I CCWWGG 2 cut(s) 330, 577
ErhI CCWWGG 2 cut(s) 330, 577
FaeI CATG 5 cut(s) 334, 409, 433, 452, 573
FaiI YATR 8 cut(s) 124, 332, 407, 431, 450, 528, 571, 588
FaqI GGGAC 1 cut(s) 78
FatI CATG 5 cut(s) 330, 405, 429, 448, 569
Fnu4HI GCNGC 6 cut(s) 103, 140, 143, 195, 311, 339
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 6 cut(s) 103, 140, 143, 195, 311, 339
FspBI CTAG 1 cut(s) 595
GlaI GCGC 2 cut(s) 87, 154
GluI GCNGC 6 cut(s) 103, 140, 143, 195, 311, 339
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 4 cut(s) 313, 341, 545, 582
HapII CCGG 3 cut(s) 96, 342, 477
HgaI GACGC 2 cut(s) 316, 331
HhaI GCGC 2 cut(s) 88, 155
Hin1II CATG 5 cut(s) 334, 409, 433, 452, 573
Hin6I GCGC 2 cut(s) 86, 153
HinP1I GCGC 2 cut(s) 86, 153
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 1 cut(s) 134
HpaII CCGG 3 cut(s) 96, 342, 477
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 1 cut(s) 255
Hpy99I CGWCG 2 cut(s) 310, 325
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 3 cut(s) 4, 77, 360
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 316, 384, 579
HpyF3I CTNAG 3 cut(s) 261, 470, 516
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 5 cut(s) 334, 409, 433, 452, 573
HspAI GCGC 2 cut(s) 86, 153
Kzo9I GATC 4 cut(s) 148, 257, 441, 473
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 2 cut(s) 475, 581
MaeI CTAG 1 cut(s) 595
MaeII ACGT 1 cut(s) 201
MalI GATC 4 cut(s) 150, 259, 443, 475
MboI GATC 4 cut(s) 148, 257, 441, 473
MflI RGATCY 1 cut(s) 473
MhlI GDGCHC 1 cut(s) 284
MmeI TCCRAC 2 cut(s) 312, 575
MnlI CCTC 6 cut(s) 24, 257, 260, 398, 429, 535
MslI CAYNNNNRTG 1 cut(s) 277
MspI CCGG 3 cut(s) 96, 342, 477
MspR9I CCNGG 2 cut(s) 96, 268
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 3 cut(s) 153, 310, 338
MwoI GCNNNNNNNGC 4 cut(s) 83, 316, 384, 579
NciI CCSGG 1 cut(s) 96
NcoI CCATGG 1 cut(s) 330
NdeII GATC 4 cut(s) 148, 257, 441, 473
NlaIII CATG 5 cut(s) 334, 409, 433, 452, 573
NspI RCATGY 2 cut(s) 409, 452
PasI CCCWGGG 1 cut(s) 267
PciI ACATGT 1 cut(s) 405
PcsI WCGNNNNNNNCGW 1 cut(s) 311
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 6 cut(s) 104, 141, 144, 196, 312, 340
PscI ACATGT 1 cut(s) 405
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspPI GGNCC 1 cut(s) 544
PstI CTGCAG 1 cut(s) 79
PsuI RGATCY 1 cut(s) 473
RseI CAYNNNNRTG 1 cut(s) 277
SatI GCNGC 6 cut(s) 103, 140, 143, 195, 311, 339
Sau3AI GATC 4 cut(s) 148, 257, 441, 473
Sau96I GGNCC 1 cut(s) 544
ScrFI CCNGG 2 cut(s) 96, 268
SduI GDGCHC 1 cut(s) 284
SetI ASST 4 cut(s) 38, 204, 249, 384
SfaNI GCATC 2 cut(s) 475, 581
SfcI CTRYAG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 277
SsiI CCGC 7 cut(s) 55, 103, 140, 143, 310, 338, 376
SspMI CTAG 1 cut(s) 595
StyD4I CCNGG 2 cut(s) 94, 266
StyI CCWWGG 2 cut(s) 330, 577
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 421
TauI GCSGC 5 cut(s) 105, 142, 145, 313, 341
TfiI GAWTC 1 cut(s) 134
TscAI CASTG 2 cut(s) 79, 487
TseI GCWGC 1 cut(s) 194
TspRI CASTG 2 cut(s) 79, 487
XceI RCATGY 2 cut(s) 409, 452
XspI CTAG 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.