RLG00000010340

Cryptochrome DASH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016105
Physical Location & Seq
Reverse (-)
818402 .. 822057
3656 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010340

Sequence Viewer

Length: 1707 bp
ATGGCTGTTCTTCACTCCTCCCTCGCTCCATACTCTCTCAAAAAGCTCATTCTCATCCCACATCTGAAACCCAGAAAAATCTATCATTTCCAAGCCATGAGCTCCAGCTCCAGACCGGAACCAGCCGCCTTAGTCCACAAGGTTCCGGGTCTGGACCCGGGCGAAATGGACTGTGTCTCGGACCAAACCTTTCAGAGGTATACCTCTTCTTCTATCAAGAGAAACGGCAATGGGGTCGCCATTGTTTGGTTTCGAAACGATCTGAGGGTTCTGGACAATGAGGCTCTCTTTAAGGCTTGGCTTTCGTCCCTGGAGGTTTTGCCTGTCTATTGCATCGATCCCAGGCTTTTTGGGTCTACCTATTACTTTGGTTTTCCTAAAACTGGAGCGTTGAGAGCGCAATTTCTTGTTGAATCCTTGGCTGACTTGAAGAAGAATTTAACGAAGCGGGGTCTTAACTTGCTCATTCAATATGGGAAGCCTGAGGAGGTTCTGCCTTCTCTTGCAAAAACATATGGAGTCCACACAGTATATGCCCAAAAAGAAACTTGCAGTGAGGAGCTGAGTGTCGAAAGATCAGTCAGCAAAGGTCTGCGGCGAGTGGTTTTACAGAGTCCTATGATTAATCCCAAGCTACAACTTATATGGGGCACCACTATGTACCACATAGATGACCTCCCGTTTGATACCAGTAGTTTACCGGATGTGTATACTCAGTTTCGCAAGTCTGTTGAAGAGAAATGCATAGTTCGTGGCTGCATAAGAATGCCAGCATCTCTGGGGCCAGCACCAAGCATTGAGGACTGGGGATGTGTTCCTTCATTAGATCAGTTTGGACTTCAACATCAAAATGTAAGTTTAGGAATGAAGTTTGTTGGGGGTGAAAGTGCAGCATTGGGCAGAATAAATGAGTATTTCTGGAAGAAGGATCTGCTAAGTACATATAAAAAGACCAGAAATGGTATGTTAGGACCTGATTATTCAACAAAGTTTTCTCCTTGGCTTGCTTCAGGAAGCCTTTCTCCTCGTCTTGTACACGAAGAGGTAAAGAGGTATGAAAAAGAAAGGCAAGCAAATGATTCCACATACTGGGTATTGTTCGAACTGATATGGAGGGATTACTTCAGGTTTCTATCAGTAAAATATGGGAATTCTCTTTTCCATCCAGGTGGCCCAAGAAAATTGGAGCATAGATGGAGCCAAGAAAAGACTTTATTTGAGACCTGGAGAGATGGCCATACAGGGTACCCACTCATAGATGCGAACATGAAAGAGCTGTCAACCACTGGATTCATGTCAAATCGGGGAAGACAGATTGTATGTTCCTTTCTGGTTCGGGATATGGGTATTGACTGGCGCATGGGAGCTGAATGGTTTGAGACATGCCTTTTGGATTATGACCCTTGTTCCAATTATGGTAATTGGACCTATGGAGCAGGAGTTGGAAATGACCCCAGGGAAGATCGTTACTTCAGCATTCCAAAACAAGCCCAGAATTATGATCCTGAAGGTGAATATGTAGCGTACTGGCTTCCACAGCTACAATCACTTCCAAAAGATAAAAGGCACTTCCCTGGACTGGCATATATCAAGCAGGTTGTCCCTCTCAAGTTTGGTAATGCTGGTAAGTATCAAAACCACGACAAGGCCTCGACTGCCAGAGGCAAAAACTTTGGAGGAAGACAAGCAAAAGGGTCCAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

569

Amino Acids

64.84

Weight (kDa)

9.25

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 80 - 249 4.6e-37 DNA photolyase
FAD_binding_7 PF03441 366 - 526 2.1e-51 FAD binding domain of DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016105)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24850
fragaria_vesca FvH4_2g30661
malus_domestica MD15G1110200.v1.1
prunus_persica Prupe.1G462400_v2.0.a1
pyrus_communis pycom15g10040
rosa_chinensis RchiOBHm_Chr6g0312231
rosa_laevigata RLG00000010340
rosa_multiflora Rmu_sc0010924.1_g000003
rosa_roxburghii Rroxscaffold_7G00156930
rosa_rugosa Rorug06G0394300
rosa_samantha Rh6AG511200 Rh6BG522200 Rh6CG528000 Rh6DG513400
rosa_wichuraiana Rw6G044460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1585
Acc65I GGTACC 1 cut(s) 1245
AccB1I GGYRCC 2 cut(s) 650, 1245
AccB7I CCANNNNNTGG 2 cut(s) 246, 1089
AccI GTMKAC 3 cut(s) 200, 356, 710
AciI CCGC 3 cut(s) 126, 448, 595
AclWI GGATC 3 cut(s) 332, 936, 1496
AcoI YGGCCR 1 cut(s) 1234
AcsI RAATTY 2 cut(s) 436, 1150
AcuI CTGAAG 4 cut(s) 993, 1108, 1456, 1527
AfaI GTAC 5 cut(s) 662, 940, 1035, 1247, 1526
AfiI CCNNNNNNNGG 6 cut(s) 195, 246, 383, 1089, 1579, 1645
AgsI TTSAA 6 cut(s) 413, 430, 470, 734, 842, 984
AjnI CCWGG 7 cut(s) 309, 341, 1165, 1223, 1454, 1573, 1697
AluBI AGCT 8 cut(s) 46, 102, 108, 562, 634, 1276, 1367, 1540
AluI AGCT 8 cut(s) 46, 102, 108, 562, 634, 1276, 1367, 1540
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 3 cut(s) 181, 1214, 1373
AlwI GGATC 3 cut(s) 332, 936, 1496
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 4 cut(s) 782, 1171, 1234, 1647
ApeKI GCWGC 2 cut(s) 756, 890
ApoI RAATTY 2 cut(s) 436, 1150
ArsI GACNNNNNNTTYG 6 cut(s) 564, 596, 665, 697, 1372, 1404
AseI ATTAAT 1 cut(s) 624
Asp700I GAANNNNTTC 1 cut(s) 1018
Asp718I GGTACC 1 cut(s) 1245
AspLEI GCGC 2 cut(s) 400, 1359
AspS9I GGNCC 7 cut(s) 154, 181, 782, 971, 1172, 1425, 1695
AsuC2I CCSGG 3 cut(s) 147, 158, 159
AsuHPI GGTGA 2 cut(s) 893, 1523
AsuII TTCGAA 2 cut(s) 253, 1101
AvaI CYCGRG 1 cut(s) 157
AvaII GGWCC 5 cut(s) 154, 181, 971, 1425, 1695
AxyI CCTNAGG 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 653
BalI TGGCCA 1 cut(s) 1236
BanI GGYRCC 2 cut(s) 650, 1245
BanII GRGCYC 1 cut(s) 104
BbsI GAAGAC 2 cut(s) 1315, 1687
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 2 cut(s) 743, 902
BccI CCATC 3 cut(s) 1170, 1188, 1226
BceAI ACGGC 1 cut(s) 241
BcgI CGANNNNNNTGC 2 cut(s) 217, 251
BciT130I CCWGG 7 cut(s) 311, 343, 1167, 1225, 1456, 1575, 1699
BcnI CCSGG 3 cut(s) 147, 158, 159
BcoDI GTCTC 3 cut(s) 181, 1214, 1373
BfuAI ACCTGC 1 cut(s) 1585
BisI GCNGC 4 cut(s) 126, 596, 757, 891
BlsI GCNGC 4 cut(s) 127, 597, 758, 892
Bme18I GGWCC 5 cut(s) 154, 181, 971, 1425, 1695
BmeT110I CYCGRG 1 cut(s) 157
BmgT120I GGNCC 7 cut(s) 154, 181, 782, 971, 1172, 1425, 1695
BmiI GGNNCC 8 cut(s) 120, 144, 156, 652, 783, 1199, 1247, 1696
BmrI ACTGGG 2 cut(s) 814, 1099
BmsI GCATC 3 cut(s) 342, 782, 1249
BmuI ACTGGG 2 cut(s) 814, 1099
BpiI GAAGAC 2 cut(s) 1315, 1687
BpmI CTGGAG 5 cut(s) 88, 94, 332, 405, 1246
Bpu14I TTCGAA 2 cut(s) 253, 1101
BpuEI CTTGAG 1 cut(s) 1592
BpuMI CCSGG 3 cut(s) 147, 158, 159
Bsa29I ATCGAT 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 1214
BsaJI CCNNGG 8 cut(s) 157, 309, 341, 417, 998, 1454, 1455, 1573
BsaWI WCCGGW 2 cut(s) 115, 700
BsaXI ACNNNNNCTCC 2 cut(s) 1425, 1455
Bsc4I CCNNNNNNNGG 6 cut(s) 195, 246, 383, 1089, 1579, 1645
Bse1I ACTGG 8 cut(s) 388, 690, 809, 1094, 1291, 1358, 1532, 1584
Bse21I CCTNAGG 1 cut(s) 483
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 7 cut(s) 311, 343, 1167, 1225, 1456, 1575, 1699
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 8 cut(s) 157, 309, 341, 417, 998, 1454, 1455, 1573
BseGI GGATG 4 cut(s) 54, 709, 815, 1162
BseLI CCNNNNNNNGG 6 cut(s) 195, 246, 383, 1089, 1579, 1645
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 4 cut(s) 254, 474, 554, 728
BseNI ACTGG 8 cut(s) 388, 690, 809, 1094, 1291, 1358, 1532, 1584
BseRI GAGGAG 4 cut(s) 7, 500, 572, 1014
BseSI GKGCMC 1 cut(s) 653
BseXI GCAGC 2 cut(s) 743, 902
BsgI GTGCAG 1 cut(s) 909
BshFI GGCC 4 cut(s) 784, 1173, 1236, 1649
BshNI GGYRCC 2 cut(s) 650, 1245
BshVI ATCGAT 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 4 cut(s) 116, 146, 158, 701
BslFI GGGAC 2 cut(s) 292, 1586
BslI CCNNNNNNNGG 6 cut(s) 195, 246, 383, 1089, 1579, 1645
BsmAI GTCTC 3 cut(s) 181, 1214, 1373
BsmFI GGGAC 2 cut(s) 292, 1586
BsmI GAATGC 2 cut(s) 771, 1476
BsnI GGCC 4 cut(s) 784, 1173, 1236, 1649
Bso31I GGTCTC 1 cut(s) 1214
BsoBI CYCGRG 1 cut(s) 157
Bsp119I TTCGAA 2 cut(s) 253, 1101
Bsp1286I GDGCHC 2 cut(s) 104, 653
Bsp1407I TGTACA 1 cut(s) 1033
Bsp143I GATC 7 cut(s) 259, 337, 575, 826, 928, 1462, 1501
BspACI CCGC 3 cut(s) 126, 448, 595
BspANI GGCC 4 cut(s) 784, 1173, 1236, 1649
BspCNI CTCAG 4 cut(s) 255, 475, 555, 727
BspDI ATCGAT 1 cut(s) 336
BspLI GGNNCC 8 cut(s) 120, 144, 156, 652, 783, 1199, 1247, 1696
BspMI ACCTGC 1 cut(s) 1585
BspPI GGATC 3 cut(s) 332, 936, 1496
BspT104I TTCGAA 2 cut(s) 253, 1101
BspT107I GGYRCC 2 cut(s) 650, 1245
BspTNI GGTCTC 1 cut(s) 1214
BsrDI GCAATG 1 cut(s) 235
BsrGI TGTACA 1 cut(s) 1033
BsrI ACTGG 8 cut(s) 388, 690, 809, 1094, 1291, 1358, 1532, 1584
BssECI CCNNGG 8 cut(s) 157, 309, 341, 417, 998, 1454, 1455, 1573
BssMI GATC 7 cut(s) 259, 337, 575, 826, 928, 1462, 1501
BssNAI GTATAC 2 cut(s) 201, 711
BssT1I CCWWGG 2 cut(s) 417, 998
Bst1107I GTATAC 2 cut(s) 201, 711
Bst2UI CCWGG 7 cut(s) 311, 343, 1167, 1225, 1456, 1575, 1699
Bst4CI ACNGT 2 cut(s) 173, 529
Bst6I CTCTTC 3 cut(s) 211, 729, 1035
BstAUI TGTACA 1 cut(s) 1033
BstBI TTCGAA 2 cut(s) 253, 1101
BstC8I GCNNGC 4 cut(s) 771, 786, 1005, 1071
BstDEI CTNAG 6 cut(s) 130, 263, 483, 563, 714, 935
BstENI CCTNNNNNAGG 1 cut(s) 193
BstF5I GGATG 4 cut(s) 54, 709, 815, 1162
BstHHI GCGC 2 cut(s) 400, 1359
BstKTI GATC 7 cut(s) 262, 340, 578, 829, 931, 1465, 1504
BstMAI GTCTC 3 cut(s) 181, 1214, 1373
BstMBI GATC 7 cut(s) 259, 337, 575, 826, 928, 1462, 1501
BstMWI GCNNNNNNNGC 3 cut(s) 395, 1537, 1655
BstNI CCWGG 7 cut(s) 311, 343, 1167, 1225, 1456, 1575, 1699
BstNSI RCATGY 1 cut(s) 1386
BstSLI GKGCMC 1 cut(s) 653
BstV1I GCAGC 2 cut(s) 743, 902
BstV2I GAAGAC 2 cut(s) 1315, 1687
BstX2I RGATCY 1 cut(s) 928
BstXI CCANNNNNNTGG 1 cut(s) 1169
BstYI RGATCY 1 cut(s) 928
BstZ17I GTATAC 2 cut(s) 201, 711
Bsu15I ATCGAT 1 cut(s) 336
Bsu36I CCTNAGG 1 cut(s) 483
BsuRI GGCC 4 cut(s) 784, 1173, 1236, 1649
BsuTUI ATCGAT 1 cut(s) 336
BtsCI GGATG 4 cut(s) 54, 709, 815, 1162
BtsI GCAGTG 1 cut(s) 559
BtsIMutI CAGTG 2 cut(s) 559, 1284
BveI ACCTGC 1 cut(s) 1585
Cac8I GCNNGC 4 cut(s) 771, 786, 1005, 1071
CfoI GCGC 2 cut(s) 400, 1359
Cfr13I GGNCC 7 cut(s) 154, 181, 782, 971, 1172, 1425, 1695
Cfr9I CCCGGG 1 cut(s) 157
ClaI ATCGAT 1 cut(s) 336
Csp6I GTAC 5 cut(s) 661, 939, 1034, 1246, 1525
CviAII CATG 5 cut(s) 97, 1267, 1294, 1360, 1383
CviQI GTAC 5 cut(s) 661, 939, 1034, 1246, 1525
DdeI CTNAG 6 cut(s) 130, 263, 483, 563, 714, 935
DpnI GATC 7 cut(s) 261, 339, 577, 828, 930, 1464, 1503
DpnII GATC 7 cut(s) 259, 337, 575, 826, 928, 1462, 1501
EaeI YGGCCR 1 cut(s) 1234
Eam1104I CTCTTC 3 cut(s) 211, 729, 1035
EarI CTCTTC 3 cut(s) 211, 729, 1035
Ecl136II GAGCTC 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 417, 998
Eco147I AGGCCT 1 cut(s) 1649
Eco24I GRGCYC 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 1214
Eco47I GGWCC 5 cut(s) 154, 181, 971, 1425, 1695
Eco53kI GAGCTC 1 cut(s) 102
Eco57I CTGAAG 4 cut(s) 993, 1108, 1456, 1527
Eco81I CCTNAGG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 102
EcoNI CCTNNNNNAGG 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 971
EcoRI GAATTC 1 cut(s) 1150
EcoRII CCWGG 7 cut(s) 309, 341, 1165, 1223, 1454, 1573, 1697
EcoT14I CCWWGG 2 cut(s) 417, 998
EcoT22I ATGCAT 1 cut(s) 746
EcoT38I GRGCYC 1 cut(s) 104
ErhI CCWWGG 2 cut(s) 417, 998
FaeI CATG 5 cut(s) 100, 1270, 1297, 1363, 1386
FaqI GGGAC 2 cut(s) 292, 1586
FatI CATG 5 cut(s) 96, 1266, 1293, 1359, 1382
FauI CCCGC 1 cut(s) 441
FauNDI CATATG 1 cut(s) 514
FblI GTMKAC 3 cut(s) 200, 356, 710
Fnu4HI GCNGC 4 cut(s) 126, 596, 757, 891
FokI GGATG 4 cut(s) 41, 716, 822, 1149
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 4 cut(s) 126, 596, 757, 891
GlaI GCGC 2 cut(s) 399, 1358
GluI GCNGC 4 cut(s) 126, 596, 757, 891
GsuI CTGGAG 5 cut(s) 88, 94, 332, 405, 1246
HaeIII GGCC 4 cut(s) 784, 1173, 1236, 1649
HapII CCGG 4 cut(s) 116, 146, 158, 701
HhaI GCGC 2 cut(s) 400, 1359
Hin1II CATG 5 cut(s) 100, 1270, 1297, 1363, 1386
Hin6I GCGC 2 cut(s) 398, 1357
HinP1I GCGC 2 cut(s) 398, 1357
HincII GTYRAC 1 cut(s) 1281
HindII GTYRAC 1 cut(s) 1281
HinfI GANTC 5 cut(s) 413, 519, 613, 1079, 1290
HpaII CCGG 4 cut(s) 116, 146, 158, 701
HphI GGTGA 2 cut(s) 893, 1523
Hpy166II GTNNAC 8 cut(s) 136, 201, 357, 523, 698, 711, 1036, 1281
Hpy188I TCNGA 4 cut(s) 66, 181, 195, 264
Hpy188III TCNNGA 8 cut(s) 111, 152, 217, 272, 919, 1011, 1337, 1505
Hpy8I GTNNAC 8 cut(s) 136, 201, 357, 523, 698, 711, 1036, 1281
HpyAV CCTTC 4 cut(s) 507, 828, 919, 1502
HpyCH4III ACNGT 2 cut(s) 173, 529
HpyCH4V TGCA 6 cut(s) 333, 506, 552, 744, 759, 890
HpyF10VI GCNNNNNNNGC 3 cut(s) 395, 1537, 1655
HpyF3I CTNAG 6 cut(s) 130, 263, 483, 563, 714, 935
Hsp92II CATG 5 cut(s) 100, 1270, 1297, 1363, 1386
HspAI GCGC 2 cut(s) 398, 1357
KpnI GGTACC 1 cut(s) 1249
Kzo9I GATC 7 cut(s) 259, 337, 575, 826, 928, 1462, 1501
LmnI GCTCC 9 cut(s) 31, 107, 113, 386, 559, 1186, 1197, 1364, 1433
Lsp1109I GCAGC 2 cut(s) 743, 902
LweI GCATC 3 cut(s) 342, 782, 1249
MaeIII GTNAC 1 cut(s) 1466
MalI GATC 7 cut(s) 261, 339, 577, 828, 930, 1464, 1503
MboI GATC 7 cut(s) 259, 337, 575, 826, 928, 1462, 1501
MflI RGATCY 1 cut(s) 928
MhlI GDGCHC 2 cut(s) 104, 653
MlsI TGGCCA 1 cut(s) 1236
MluCI AATT 7 cut(s) 401, 436, 1150, 1181, 1411, 1420, 1495
MluNI TGGCCA 1 cut(s) 1236
MlyI GAGTC 2 cut(s) 528, 622
MmeI TCCRAC 1 cut(s) 1423
Mox20I TGGCCA 1 cut(s) 1236
Mph1103I ATGCAT 1 cut(s) 746
MroXI GAANNNNTTC 1 cut(s) 1018
MscI TGGCCA 1 cut(s) 1236
MseI TTAA 4 cut(s) 291, 440, 456, 624
MslI CAYNNNNRTG 5 cut(s) 656, 669, 764, 849, 1167
Msp20I TGGCCA 1 cut(s) 1236
MspI CCGG 4 cut(s) 116, 146, 158, 701
Mva1269I GAATGC 2 cut(s) 771, 1476
MvaI CCWGG 7 cut(s) 311, 343, 1167, 1225, 1456, 1575, 1699
MwoI GCNNNNNNNGC 3 cut(s) 395, 1537, 1655
NciI CCSGG 3 cut(s) 147, 158, 159
NdeI CATATG 1 cut(s) 514
NdeII GATC 7 cut(s) 259, 337, 575, 826, 928, 1462, 1501
NlaIII CATG 5 cut(s) 100, 1270, 1297, 1363, 1386
NlaIV GGNNCC 8 cut(s) 120, 144, 156, 652, 783, 1199, 1247, 1696
NsiI ATGCAT 1 cut(s) 746
NspI RCATGY 1 cut(s) 1386
NspV TTCGAA 2 cut(s) 253, 1101
PasI CCCWGGG 1 cut(s) 1455
PceI AGGCCT 1 cut(s) 1649
PctI GAATGC 2 cut(s) 771, 1476
PdmI GAANNNNTTC 1 cut(s) 1018
PfeI GAWTC 3 cut(s) 413, 1079, 1290
PflFI GACNNNGTC 1 cut(s) 173
PflMI CCANNNNNTGG 2 cut(s) 246, 1089
PfoI TCCNGGA 1 cut(s) 1697
PkrI GCNGC 4 cut(s) 127, 597, 758, 892
PleI GAGTC 2 cut(s) 527, 621
PpsI GAGTC 2 cut(s) 527, 621
PpuMI RGGWCCY 1 cut(s) 971
PshBI ATTAAT 1 cut(s) 624
Psp124BI GAGCTC 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 971
Psp6I CCWGG 7 cut(s) 309, 341, 1165, 1223, 1454, 1573, 1697
PspGI CCWGG 7 cut(s) 309, 341, 1165, 1223, 1454, 1573, 1697
PspN4I GGNNCC 8 cut(s) 120, 144, 156, 652, 783, 1199, 1247, 1696
PspPI GGNCC 7 cut(s) 154, 181, 782, 971, 1172, 1425, 1695
PspPPI RGGWCCY 1 cut(s) 971
PsuI RGATCY 1 cut(s) 928
PsyI GACNNNGTC 1 cut(s) 173
RsaI GTAC 5 cut(s) 662, 940, 1035, 1247, 1526
RsaNI GTAC 5 cut(s) 661, 939, 1034, 1246, 1525
RseI CAYNNNNRTG 5 cut(s) 656, 669, 764, 849, 1167
SacI GAGCTC 1 cut(s) 104
SaqAI TTAA 4 cut(s) 291, 440, 456, 624
SatI GCNGC 4 cut(s) 126, 596, 757, 891
Sau3AI GATC 7 cut(s) 259, 337, 575, 826, 928, 1462, 1501
Sau96I GGNCC 7 cut(s) 154, 181, 782, 971, 1172, 1425, 1695
SchI GAGTC 2 cut(s) 528, 622
SduI GDGCHC 2 cut(s) 104, 653
SfaNI GCATC 3 cut(s) 342, 782, 1249
SfuI TTCGAA 2 cut(s) 253, 1101
SinI GGWCC 5 cut(s) 154, 181, 971, 1425, 1695
SmaI CCCGGG 1 cut(s) 159
SmiMI CAYNNNNRTG 5 cut(s) 656, 669, 764, 849, 1167
SmlI CTYRAG 1 cut(s) 1607
SmoI CTYRAG 1 cut(s) 1607
Sse9I AATT 7 cut(s) 401, 436, 1150, 1181, 1411, 1420, 1495
SseBI AGGCCT 1 cut(s) 1649
SsiI CCGC 3 cut(s) 126, 448, 595
SstI GAGCTC 1 cut(s) 104
StuI AGGCCT 1 cut(s) 1649
StyI CCWWGG 2 cut(s) 417, 998
TaaI ACNGT 2 cut(s) 173, 529
TaqI TCGA 5 cut(s) 253, 336, 570, 1101, 1652
TasI AATT 7 cut(s) 401, 436, 1150, 1181, 1411, 1420, 1495
TatI WGTACW 2 cut(s) 938, 1033
TauI GCSGC 2 cut(s) 128, 598
TfiI GAWTC 3 cut(s) 413, 1079, 1290
Tru1I TTAA 4 cut(s) 291, 440, 456, 624
Tru9I TTAA 4 cut(s) 291, 440, 456, 624
TscAI CASTG 2 cut(s) 559, 1291
TseI GCWGC 2 cut(s) 756, 890
TspDTI ATGAA 5 cut(s) 810, 881, 1071, 1282, 1283
TspMI CCCGGG 1 cut(s) 157
TspRI CASTG 2 cut(s) 559, 1291
Tth111I GACNNNGTC 1 cut(s) 173
Van91I CCANNNNNTGG 2 cut(s) 246, 1089
VpaK11BI GGWCC 5 cut(s) 154, 181, 971, 1425, 1695
VspI ATTAAT 1 cut(s) 624
XagI CCTNNNNNAGG 1 cut(s) 193
XapI RAATTY 2 cut(s) 436, 1150
XceI RCATGY 1 cut(s) 1386
XmaI CCCGGG 1 cut(s) 157
XmiI GTMKAC 3 cut(s) 200, 356, 710
XmnI GAANNNNTTC 1 cut(s) 1018
Zsp2I ATGCAT 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.