Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009978

Physical Location & Seq

Genomic Coordinates Forward (+)

53983048 .. 53984843

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0394300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGGTGTAGGATTCCCAGTTGGTCGAATTCACCGTCTTTTGAAGACAAGGGTTCAATCTAGCGGAAGAGTTGGGGCTACAGCTGCTGTGTACGCGGCTGCTATCTTGGAGTATCTGACTGCAGAAGTGTTGGAGTTGGCAGGTAATGCAAGCAAAGATCTAAAGGTGAAGCGTATAACACCCAGGCATCTGCAGCTTGCCATTCGTGGTGATGAAGAACTGGACACCCTGATCAAAGGTACAATAGCCGGCGGTGGCGTGATCCCTCACATTCACAAGTCTCTCATCAACAAGTCCTCTAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

102

Amino Acids

10.89

Weight (kDa)

9.99

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	5 - 70	2.8e-15	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	72 - 101	8.2e-11	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24830
fragaria_vesca	FvH4_2g30660 FvH4_2g30660 FvH4_2g30660 FvH4_2g30660 FvH4_2g30660
malus_domestica	MD08G1133900.v1.1 MD15G1110300.v1.1
prunus_persica	Prupe.1G462500_v2.0.a1
pyrus_communis	pycom08g11270
rosa_chinensis	RchiOBHm_Chr6g0312241
rosa_laevigata	RLG00000010339
rosa_multiflora	Rmu_sc0010924.1_g000002 Rmu_ssc0000424.1_g000002
rosa_roxburghii	Rroxscaffold_7G00156920
rosa_rugosa	Rorug06G0394300
rosa_samantha	Rh6AG511300 Rh6BG522300 Rh6CG528100 Rh6DG513600
rosa_wichuraiana	Rw6G044470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	131
AccII	CGCG	1 cut(s)	95
AciI	CCGC	3 cut(s)	63, 95, 252
AclWI	GGATC	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	27
AfaI	GTAC	2 cut(s)	92, 241
AgsI	TTSAA	2 cut(s)	43, 56
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	2 cut(s)	83, 196
AluI	AGCT	2 cut(s)	83, 196
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	1 cut(s)	256
AlwNI	CAGNNNCTG	1 cut(s)	86
ApeKI	GCWGC	3 cut(s)	83, 98, 193
ApoI	RAATTY	1 cut(s)	27
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
AsuHPI	GGTGA	3 cut(s)	23, 178, 221
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	3 cut(s)	70, 85, 205
BciT130I	CCWGG	1 cut(s)	184
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	3 cut(s)	78, 120, 191
BfuAI	ACCTGC	1 cut(s)	131
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	4 cut(s)	84, 96, 99, 194
BlsI	GCNGC	4 cut(s)	85, 97, 100, 195
Bme1390I	CCNGG	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	184
BmrI	ACTGGG	1 cut(s)	11
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	11
BpiI	GAAGAC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	182
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	17, 225
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	182
BseNI	ACTGG	2 cut(s)	17, 225
BseXI	GCAGC	3 cut(s)	70, 85, 205
Bsh1236I	CGCG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	157, 231, 261
BspACI	CCGC	3 cut(s)	63, 95, 252
BspFNI	CGCG	1 cut(s)	95
BspMAI	CTGCAG	2 cut(s)	124, 195
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	17, 225
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	3 cut(s)	157, 231, 261
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	61
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	3 cut(s)	151, 198, 250
BstFNI	CGCG	1 cut(s)	95
BstKTI	GATC	3 cut(s)	160, 234, 264
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	3 cut(s)	157, 231, 261
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 92, 146, 193
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	182
BstSFI	CTRYAG	3 cut(s)	78, 120, 191
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	70, 85, 205
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	3 cut(s)	151, 198, 250
CaiI	CAGNNNCTG	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	248
Csp6I	GTAC	2 cut(s)	91, 240
CviJI	RGCY	5 cut(s)	77, 83, 98, 196, 248
CviKI_1	RGCY	5 cut(s)	77, 83, 98, 196, 248
CviQI	GTAC	2 cut(s)	91, 240
DpnI	GATC	3 cut(s)	159, 233, 263
DpnII	GATC	3 cut(s)	157, 231, 261
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	182
FaiI	YATR	1 cut(s)	176
FbaI	TGATCA	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	84, 96, 99, 194
Fsp4HI	GCNGC	4 cut(s)	84, 96, 99, 194
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	4 cut(s)	84, 96, 99, 194
HapII	CCGG	1 cut(s)	249
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	3 cut(s)	23, 178, 221
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	117
Hpy8I	GTNNAC	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4V	TGCA	3 cut(s)	122, 149, 193
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 92, 146, 193
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	3 cut(s)	157, 231, 261
LpnPI	CCDG	7 cut(s)	30, 126, 169, 196, 206, 242, 262
Lsp1109I	GCAGC	3 cut(s)	70, 85, 205
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	60
MalI	GATC	3 cut(s)	159, 233, 263
MboI	GATC	3 cut(s)	157, 231, 261
MboII	GAAGA	3 cut(s)	55, 78, 227
MflI	RGATCY	1 cut(s)	157
MluCI	AATT	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	2 cut(s)	276, 307
MroNI	GCCGGC	1 cut(s)	248
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	4 cut(s)	83, 92, 146, 193
NaeI	GCCGGC	1 cut(s)	250
NdeII	GATC	3 cut(s)	157, 231, 261
NgoMIV	GCCGGC	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PdiI	GCCGGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	4 cut(s)	85, 97, 100, 195
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PstI	CTGCAG	2 cut(s)	124, 195
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	2 cut(s)	92, 241
RsaNI	GTAC	2 cut(s)	91, 240
SatI	GCNGC	4 cut(s)	84, 96, 99, 194
Sau3AI	GATC	3 cut(s)	157, 231, 261
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	5 cut(s)	85, 145, 168, 198, 241
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	3 cut(s)	78, 120, 191
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	3 cut(s)	63, 95, 252
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	25
TasI	AATT	1 cut(s)	27
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	12
TseI	GCWGC	3 cut(s)	83, 98, 193
TspDTI	ATGAA	1 cut(s)	228
XapI	RAATTY	1 cut(s)	27
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.