Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000424.1

Orthogroup ID

OG0009978

Physical Location & Seq

Genomic Coordinates Forward (+)

2367 .. 4981

Gene Structure 2615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000424.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1791 bp

atggcgtgtgcaattgtgtgcggagaatcatcgccgtcccacattacgcttttccgatgcttgaatcgaaccctggactctattaaggacaatatcgctatcatcttcgctaacattttgggctgccaagctgacgccgctgaaaatttcaggaattgtaggagtgaggatctagttccatctagtttcgaggaattgctggaaaaatggggtgaggataaccacttgactgatcaggattggttttcgaggaagaagaatgccggcaatgatcaggatccgcaggcagagttcaatgtgttggatacaatgctgaaggatagtttggagcgtctgaaaacaatgagggaaagcatatcagtggcaaagataggttttttgggatgcactttgaaagctaattactcagaacacatggacatcataaggggtttatgcgttgatggtaagttggggtctgccttttggcttcggagaaagatgatgaagaaagggattattccagatgtatcgacacataattatctattgaatggactgtgtaaagctggtgacttggagaaggcaaatttgcttattagggagatgctagaaatgggtcccgctcccaactgtgtcacatacaacacttttattaagggttattgccttcttgataaagtggataaagctctttatcttttctccacaatgggtaacagtggtattaggccgaatagtattacttgtaatatgcttgtgcatgcattgtgcaagaaaggtcttgcggagaatgctaggaagcttcttgaagagatattagatgatgatgatgatgagaaaacagactcaggtataatcaccttaactacacttatggatggttatcttaaaaatggaaatatggttcaggcacttagtctttgggttgacatccaaaggaatacccaagtagatgtcattgcttataatgttctcatccgtggattttgtttgagtcggcaaatgaaccttgcttatggatacttctgtgaaatgaccaaaagaggtttacatcctgatgtttttacttgtaatacacttataagtggtctttgcaaagaaagaaagtttgaggaggcttgttacatccatggtattatgccaagaatgggaattactccagataaagtttcgtacaaaataattatacaaggcctatgtatccagggagatgttgtcaaagctcatgaatttcttcttagtatgttagagaagtcgatggtgcctgagcctttgatatggaattgtattattgattgttatggaagatatggggatcttagtaatgcagtttctgttaaggatcagatgtttgcttttggtgttcaaccaaacgtatatacttacaatgcattgatccacgcacaagtgaaaggaggaaatatcattgatgctctttctcttgaaaaggatatgcttctgtctggtctttttcctgatgtggtcacttataatatgttgatagggggagcttgtaactcagggcatttggaatttgccacggagctatatcataaaatgctgaaaataggacttgatccagatatatatacttacactgaactaatcagagggaactgcaagagaggtaatatcaaggaggcagaaaatgttcttgcgaagatacaggcatctggtttgcctattgatgatgttccatttcagatacttttcaagaagtactgcaaaatgagggagcctgataaagcatctggcatttatgagaagtggcaagcgaggaggaatgagttgccctctttaagaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

596

Amino Acids

67.04

Weight (kDa)

6.07

Isoelectric Point (pI)

28.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24830
fragaria_vesca	FvH4_2g30660 FvH4_2g30660 FvH4_2g30660 FvH4_2g30660 FvH4_2g30660
malus_domestica	MD08G1133900.v1.1 MD15G1110300.v1.1
prunus_persica	Prupe.1G462500_v2.0.a1
pyrus_communis	pycom08g11270
rosa_chinensis	RchiOBHm_Chr6g0312241
rosa_laevigata	RLG00000010339
rosa_multiflora	Rmu_sc0010924.1_g000002 Rmu_ssc0000424.1_g000002
rosa_roxburghii	Rroxscaffold_7G00156920
rosa_rugosa	Rorug06G0394300
rosa_samantha	Rh6AG511300 Rh6BG522300 Rh6CG528100 Rh6DG513600
rosa_wichuraiana	Rw6G044470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	948, 1064, 1473
AccB1I	GGYRCC	1 cut(s)	1243
AccBSI	CCGCTC	1 cut(s)	605
AciI	CCGC	5 cut(s)	21, 138, 281, 603, 767
AclWI	GGATC	7 cut(s)	177, 272, 285, 1305, 1332, 1372, 1553
AcsI	RAATTY	4 cut(s)	145, 568, 1211, 1514
AcuI	CTGAAG	1 cut(s)	335
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	2 cut(s)	1157, 1703
AfiI	CCNNNNNNNGG	1 cut(s)	1130
AgsI	TTSAA	8 cut(s)	64, 295, 394, 532, 791, 1349, 1427, 1696
AjnI	CCWGG	2 cut(s)	72, 1185
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AloI	GAACNNNNNNTCC	2 cut(s)	870, 902
AluBI	AGCT	8 cut(s)	131, 398, 548, 671, 784, 1205, 1493, 1528
AluI	AGCT	8 cut(s)	131, 398, 548, 671, 784, 1205, 1493, 1528
AlwI	GGATC	7 cut(s)	177, 272, 285, 1305, 1332, 1372, 1553
AlwNI	CAGNNNCTG	1 cut(s)	1316
AoxI	GGCC	2 cut(s)	710, 1174
ApeKI	GCWGC	1 cut(s)	123
ApoI	RAATTY	4 cut(s)	145, 568, 1211, 1514
Asp700I	GAANNNNTTC	2 cut(s)	1215, 1632
AspS9I	GGNCC	1 cut(s)	599
AsuHPI	GGTGA	3 cut(s)	224, 563, 832
AvaII	GGWCC	1 cut(s)	599
BaeI	ACNNNNGTAYC	2 cut(s)	994, 1027
BamHI	GGATCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	1243
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	4 cut(s)	187, 437, 854, 1234
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	2 cut(s)	74, 1187
BciVI	GTATCC	3 cut(s)	298, 995, 1193
BclI	TGATCA	2 cut(s)	232, 271
BfaI	CTAG	4 cut(s)	173, 183, 590, 777
BfuI	GTATCC	3 cut(s)	298, 995, 1193
BisI	GCNGC	2 cut(s)	124, 138
BlsI	GCNGC	2 cut(s)	125, 139
BmcAI	AGTACT	1 cut(s)	1703
Bme1390I	CCNGG	2 cut(s)	74, 1187
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	599
BmiI	GGNNCC	5 cut(s)	279, 600, 601, 1245, 1719
BmrFI	CCNGG	2 cut(s)	74, 1187
BmsI	GCATC	6 cut(s)	47, 374, 576, 1402, 1661, 1739
BplI	GAGNNNNNCTC	1 cut(s)	1760
BpmI	CTGGAG	1 cut(s)	1125
Bpu10I	CCTNAGC	1 cut(s)	1248
BsaBI	GATNNNNATC	2 cut(s)	276, 864
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	5 cut(s)	72, 961, 1111, 1186, 1521
BsaXI	ACNNNNNCTCC	2 cut(s)	1182, 1212
Bsc4I	CCNNNNNNNGG	1 cut(s)	1130
Bse118I	RCCGGY	1 cut(s)	263
Bse3DI	GCAATG	2 cut(s)	274, 939
Bse8I	GATNNNNATC	2 cut(s)	276, 864
BseBI	CCWGG	2 cut(s)	74, 1187
BseDI	CCNNGG	5 cut(s)	72, 961, 1111, 1186, 1521
BseGI	GGATG	6 cut(s)	389, 865, 912, 957, 1033, 1107
BseJI	GATNNNNATC	2 cut(s)	276, 864
BseLI	CCNNNNNNNGG	1 cut(s)	1130
BseMI	GCAATG	2 cut(s)	274, 939
BseMII	CTCAG	4 cut(s)	420, 843, 1239, 1515
BseRI	GAGGAG	2 cut(s)	1109, 1774
BseXI	GCAGC	1 cut(s)	110
BshFI	GGCC	2 cut(s)	712, 1176
BshNI	GGYRCC	1 cut(s)	1243
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	2 cut(s)	22, 585
BslI	CCNNNNNNNGG	1 cut(s)	1130
BsmFI	GGGAC	2 cut(s)	22, 585
BsmI	GAATGC	2 cut(s)	265, 778
BsnI	GGCC	2 cut(s)	712, 1176
Bsp143I	GATC	8 cut(s)	169, 232, 271, 277, 1297, 1324, 1377, 1558
Bsp19I	CCATGG	1 cut(s)	1111
BspACI	CCGC	5 cut(s)	21, 138, 281, 603, 767
BspANI	GGCC	2 cut(s)	712, 1176
BspCNI	CTCAG	4 cut(s)	419, 842, 1240, 1514
BspHI	TCATGA	1 cut(s)	1207
BspLI	GGNNCC	5 cut(s)	279, 600, 601, 1245, 1719
BspPI	GGATC	7 cut(s)	177, 272, 285, 1305, 1332, 1372, 1553
BspT107I	GGYRCC	1 cut(s)	1243
BsrBI	CCGCTC	1 cut(s)	605
BsrDI	GCAATG	2 cut(s)	274, 939
BsrFI	RCCGGY	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	5 cut(s)	72, 961, 1111, 1186, 1521
BssMI	GATC	8 cut(s)	169, 232, 271, 277, 1297, 1324, 1377, 1558
BssNI	GRCGYC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	1111
Bst2UI	CCWGG	2 cut(s)	74, 1187
Bst4CI	ACNGT	3 cut(s)	540, 614, 701
Bst6I	CTCTTC	1 cut(s)	786
BstACI	GRCGYC	1 cut(s)	135
BstC8I	GCNNGC	4 cut(s)	265, 285, 744, 1755
BstDEI	CTNAG	8 cut(s)	406, 829, 896, 1220, 1248, 1301, 1501, 1788
BstDSI	CCRYGG	3 cut(s)	961, 1111, 1521
BstF5I	GGATG	6 cut(s)	389, 865, 912, 957, 1033, 1107
BstKTI	GATC	8 cut(s)	172, 235, 274, 280, 1300, 1327, 1380, 1561
BstMBI	GATC	8 cut(s)	169, 232, 271, 277, 1297, 1324, 1377, 1558
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 773
BstNI	CCWGG	2 cut(s)	74, 1187
BstNSI	RCATGY	1 cut(s)	746
BstSCI	CCNGG	2 cut(s)	72, 1185
BstV1I	GCAGC	1 cut(s)	110
BstX2I	RGATCY	3 cut(s)	169, 277, 1297
BstYI	RGATCY	3 cut(s)	169, 277, 1297
BsuI	GTATCC	3 cut(s)	298, 995, 1193
BsuRI	GGCC	2 cut(s)	712, 1176
BtgI	CCRYGG	3 cut(s)	961, 1111, 1521
BtgZI	GCGATG	1 cut(s)	15
BtsCI	GGATG	6 cut(s)	389, 865, 912, 957, 1033, 1107
BtsIMutI	CAGTG	3 cut(s)	366, 706, 1578
Cac8I	GCNNGC	4 cut(s)	265, 285, 744, 1755
CaiI	CAGNNNCTG	1 cut(s)	1316
CciI	TCATGA	1 cut(s)	1207
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	599
CseI	GACGC	2 cut(s)	143, 320
Csp6I	GTAC	2 cut(s)	1156, 1702
CviAII	CATG	4 cut(s)	415, 743, 1112, 1208
CviQI	GTAC	2 cut(s)	1156, 1702
DdeI	CTNAG	8 cut(s)	406, 829, 896, 1220, 1248, 1301, 1501, 1788
DpnI	GATC	8 cut(s)	171, 234, 273, 279, 1299, 1326, 1379, 1560
DpnII	GATC	8 cut(s)	169, 232, 271, 277, 1297, 1324, 1377, 1558
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
Eco130I	CCWWGG	1 cut(s)	1111
Eco147I	AGGCCT	1 cut(s)	1176
Eco47I	GGWCC	1 cut(s)	599
Eco57I	CTGAAG	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	72, 1185
EcoT14I	CCWWGG	1 cut(s)	1111
EcoT22I	ATGCAT	2 cut(s)	748, 1375
ErhI	CCWWGG	1 cut(s)	1111
FaeI	CATG	4 cut(s)	418, 746, 1115, 1211
FaqI	GGGAC	2 cut(s)	22, 585
FatI	CATG	4 cut(s)	414, 742, 1111, 1207
FauI	CCCGC	1 cut(s)	610
FbaI	TGATCA	2 cut(s)	232, 271
Fnu4HI	GCNGC	2 cut(s)	124, 138
FokI	GGATG	6 cut(s)	396, 872, 899, 944, 1020, 1094
Fsp4HI	GCNGC	2 cut(s)	124, 138
FspBI	CTAG	4 cut(s)	173, 183, 590, 777
GluI	GCNGC	2 cut(s)	124, 138
GsuI	CTGGAG	1 cut(s)	1125
HaeIII	GGCC	2 cut(s)	712, 1176
HapII	CCGG	1 cut(s)	264
HgaI	GACGC	2 cut(s)	143, 320
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	4 cut(s)	418, 746, 1115, 1211
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HindIII	AAGCTT	1 cut(s)	782
HinfI	GANTC	5 cut(s)	26, 64, 77, 827, 976
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	3 cut(s)	224, 563, 832
Hpy166II	GTNNAC	2 cut(s)	910, 1031
Hpy188I	TCNGA	7 cut(s)	56, 336, 409, 474, 1329, 1592, 1686
Hpy8I	GTNNAC	2 cut(s)	910, 1031
HpyAV	CCTTC	3 cut(s)	310, 556, 659
HpyCH4III	ACNGT	3 cut(s)	540, 614, 701
HpyCH4IV	ACGT	1 cut(s)	1356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 773
HpyF3I	CTNAG	8 cut(s)	406, 829, 896, 1220, 1248, 1301, 1501, 1788
HpySE526I	ACGT	1 cut(s)	1356
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	4 cut(s)	418, 746, 1115, 1211
KflI	GGGWCCC	1 cut(s)	599
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Ksp22I	TGATCA	2 cut(s)	232, 271
Kzo9I	GATC	8 cut(s)	169, 232, 271, 277, 1297, 1324, 1377, 1558
LmnI	GCTCC	5 cut(s)	328, 610, 1490, 1525, 1717
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	6 cut(s)	47, 374, 576, 1402, 1661, 1739
MaeI	CTAG	4 cut(s)	173, 183, 590, 777
MaeII	ACGT	1 cut(s)	1356
MaeIII	GTNAC	6 cut(s)	551, 616, 695, 1103, 1465, 1496
MalI	GATC	8 cut(s)	171, 234, 273, 279, 1299, 1326, 1379, 1560
MbiI	CCGCTC	1 cut(s)	605
MboI	GATC	8 cut(s)	169, 232, 271, 277, 1297, 1324, 1377, 1558
MboII	GAAGA	8 cut(s)	97, 265, 268, 499, 803, 1208, 1299, 1654
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	3 cut(s)	169, 277, 1297
MlyI	GAGTC	3 cut(s)	71, 821, 985
MmeI	TCCRAC	1 cut(s)	282
Mph1103I	ATGCAT	2 cut(s)	748, 1375
MroNI	GCCGGC	1 cut(s)	263
MroXI	GAANNNNTTC	2 cut(s)	1215, 1632
MseI	TTAA	6 cut(s)	84, 636, 845, 870, 1320, 1781
MslI	CAYNNNNRTG	2 cut(s)	359, 1038
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	2 cut(s)	74, 1187
MunI	CAATTG	1 cut(s)	12
Mva1269I	GAATGC	2 cut(s)	265, 778
MvaI	CCWGG	2 cut(s)	74, 1187
MwoI	GCNNNNNNNGC	2 cut(s)	137, 773
NaeI	GCCGGC	1 cut(s)	265
NcoI	CCATGG	1 cut(s)	1111
NdeII	GATC	8 cut(s)	169, 232, 271, 277, 1297, 1324, 1377, 1558
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	4 cut(s)	418, 746, 1115, 1211
NlaIV	GGNNCC	5 cut(s)	279, 600, 601, 1245, 1719
NmuCI	GTSAC	3 cut(s)	551, 616, 1465
NsiI	ATGCAT	2 cut(s)	748, 1375
NspI	RCATGY	1 cut(s)	746
PaeI	GCATGC	1 cut(s)	746
PagI	TCATGA	1 cut(s)	1207
PceI	AGGCCT	1 cut(s)	1176
PctI	GAATGC	2 cut(s)	265, 778
PdiI	GCCGGC	1 cut(s)	265
PdmI	GAANNNNTTC	2 cut(s)	1215, 1632
PfeI	GAWTC	2 cut(s)	26, 64
PkrI	GCNGC	2 cut(s)	125, 139
PleI	GAGTC	3 cut(s)	71, 821, 984
PpsI	GAGTC	3 cut(s)	71, 821, 984
PpuMI	RGGWCCY	1 cut(s)	599
PsiI	TTATAA	3 cut(s)	948, 1064, 1473
Psp5II	RGGWCCY	1 cut(s)	599
Psp6I	CCWGG	2 cut(s)	72, 1185
PspGI	CCWGG	2 cut(s)	72, 1185
PspN4I	GGNNCC	5 cut(s)	279, 600, 601, 1245, 1719
PspPI	GGNCC	1 cut(s)	599
PspPPI	RGGWCCY	1 cut(s)	599
PstNI	CAGNNNCTG	1 cut(s)	1316
PsuI	RGATCY	3 cut(s)	169, 277, 1297
RsaI	GTAC	2 cut(s)	1157, 1703
RsaNI	GTAC	2 cut(s)	1156, 1702
RseI	CAYNNNNRTG	2 cut(s)	359, 1038
SaqAI	TTAA	6 cut(s)	84, 636, 845, 870, 1320, 1781
SatI	GCNGC	2 cut(s)	124, 138
Sau3AI	GATC	8 cut(s)	169, 232, 271, 277, 1297, 1324, 1377, 1558
Sau96I	GGNCC	1 cut(s)	599
ScaI	AGTACT	1 cut(s)	1703
SchI	GAGTC	3 cut(s)	71, 821, 985
ScrFI	CCNGG	2 cut(s)	74, 1187
SfaNI	GCATC	6 cut(s)	47, 374, 576, 1402, 1661, 1739
SinI	GGWCC	1 cut(s)	599
SmiMI	CAYNNNNRTG	2 cut(s)	359, 1038
SphI	GCATGC	1 cut(s)	746
SseBI	AGGCCT	1 cut(s)	1176
SsiI	CCGC	5 cut(s)	21, 138, 281, 603, 767
SspMI	CTAG	4 cut(s)	173, 183, 590, 777
StuI	AGGCCT	1 cut(s)	1176
StyD4I	CCNGG	2 cut(s)	72, 1185
StyI	CCWWGG	1 cut(s)	1111
TaaI	ACNGT	3 cut(s)	540, 614, 701
TaiI	ACGT	1 cut(s)	1359
TaqI	TCGA	5 cut(s)	67, 189, 248, 512, 1238
TatI	WGTACW	1 cut(s)	1701
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	2 cut(s)	26, 64
Tru1I	TTAA	6 cut(s)	84, 636, 845, 870, 1320, 1781
Tru9I	TTAA	6 cut(s)	84, 636, 845, 870, 1320, 1781
TscAI	CASTG	3 cut(s)	366, 706, 1585
TseFI	GTSAC	3 cut(s)	551, 616, 1465
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	3 cut(s)	551, 616, 1465
TspDTI	ATGAA	3 cut(s)	500, 1001, 1224
TspGWI	ACGGA	2 cut(s)	950, 1538
TspRI	CASTG	3 cut(s)	366, 706, 1585
VpaK11BI	GGWCC	1 cut(s)	599
XapI	RAATTY	4 cut(s)	145, 568, 1211, 1514
XceI	RCATGY	1 cut(s)	746
XmnI	GAANNNNTTC	2 cut(s)	1215, 1632
XspI	CTAG	4 cut(s)	173, 183, 590, 777
ZrmI	AGTACT	1 cut(s)	1703
Zsp2I	ATGCAT	2 cut(s)	748, 1375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.