Rh6BG522200

Cryptochrome DASH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016105
Physical Location & Seq
Forward (+)
71521133 .. 71524799
3667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG522200.1

Sequence Viewer

Length: 1710 bp
ATGCCATGGCTGTTCTTCACTCCTCGCTCGCTCCATACTCTGAAAAAGCTCATTCTCATCCCACATCTGAAACCCAGAAAAATCTTTCATTTCCAAGCCATGAGCTCCAGCTCCAGACCGGAACCCGCTGCCTTAGTCCACAAGGTTCCGGGTCTGGACCCGGACGAAATGGACCGTGTCTCGGACCAAACCTTTCAGAGGTATACCTCCTCTTCTGTTAAGAGAAACGGCAATGGGGTCGCCATTGTTTGGTTTCGAAACGATCTGAGGGTTCTGGACAATGAGGCTCTCTTTAAGGCCTGGCTTTCGTCCCTGGAGGTTTTGCCTGTCTATTGCATCGATCCCAGGCTTTTTGGCTCTACCTATTACTTTGGTTTTCCTAAAACTGGAGCGTTGAGAGCGCAATTTCTTGTTGAATCCTTGGCTGACTTGAAGAAGAATTTAACGAAGCGGGGTCTTAACTTGCTCATTCAATATGGGAAGCCTGAGGAGGTTCTGCCTTCTCTTGCAAAAACATATGGAGTCCACACAGTATATGCCCAAAAAGAAACTTGCAGTGAAGAGCTGAGTGTGGAAAGATCGGTCAGCAAAGGTCTGCGGCGAGTGGTTTTACAGAGTCCTATGATTAATCCCAAGCTACAACTTATATGGGGCACCACTATGTACCACATAGATGACCTCCCGTTTGATACCAGTAGTTTACCGGATGTCTATACTCAGTTTCGCAAGTCTGTTGAAGCGAAATGCTCTGTTCGTGGCTGCATAAGAATGCCAGCATCTCTGGGGCCATCACCCAGCATTGAGGACTGGGGATGTGTTCCTTCATTAGATCAGTTTGGACTTCAACATCAAAATGTAAGTTTAGGAATGCAGTTTGTTGGGGGTGAAAGCGCAGCATTGGGCAGAATAAATGAGTATTTCTGGAAGAAGGATCTGCTAAGTATATATAAAAAGACCAGAAATGGGATGTTAGGACCTGATTATTCAACAAAGTTTTCTCCTTGGCTTGCTTCAGGAAGCCTTTCTCCTCGTCTCGTACACGAAGAGGTAAAGAGGTATGAAAAAGAAAGGCAAGCAAATGATTCCACTTACTGGTTATTGTTCGAACTGATATGGAGGGATTACTTCAGGTTTCTATCAGTAAAATATGGGAATTCTCTTTTCCATCCAGGTGGCCCAAGAAAATTGGAGCATAGATGGAGCCAAGAAAAGACTTTATTTGAGACCTGGAGAGATGGCCATACAGGGTACCCACTCATAGATGCGAACATGAAAGAGCTGTCAACCACTGGATTCATGTCAAATCGGGGAAGACAGATTGTATGTTCCTTTCTGGTTCGAGATATGGGTATTGACTGGCGCATGGGAGCTGAATGGTTTGAGACATGCCTTTTGGATTATGACCCTTGTTCCAATTATGGTAATTGGACCTATGGAGCAGGAGTAGGAAATGACCCCAGGGAAGATCGTTACTTCAGCATTCCAAAACAAGCCCAGAATTATGATCCTGAAGGTGAGTATGTAGCGTACTGGCTTCCAAAGCTACAATCACTTCCAAAAGATAAAAGGCACTTCCCTGGACTGGCATATATCAAGCAGGTTGTCCCTCTCAAGTTTGGTAATGCTGGTAAGTATCAAAACCACGACAAGGCCTCGACTGCCAGAGGCAAAAACTTTGGAGGAAGACAAGCAAAAGGGTCCAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

569

Amino Acids

65.24

Weight (kDa)

9.37

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 81 - 250 3.1e-37 DNA photolyase
FAD_binding_7 PF03441 367 - 527 2.3e-51 FAD binding domain of DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016105)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24850
fragaria_vesca FvH4_2g30661
malus_domestica MD15G1110200.v1.1
prunus_persica Prupe.1G462400_v2.0.a1
pyrus_communis pycom15g10040
rosa_chinensis RchiOBHm_Chr6g0312231
rosa_laevigata RLG00000010340
rosa_multiflora Rmu_sc0010924.1_g000003
rosa_roxburghii Rroxscaffold_7G00156930
rosa_rugosa Rorug06G0394300
rosa_samantha Rh6AG511200 Rh6BG522200 Rh6CG528000 Rh6DG513400
rosa_wichuraiana Rw6G044460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1588
Acc65I GGTACC 1 cut(s) 1248
AccB1I GGYRCC 2 cut(s) 653, 1248
AccB7I CCANNNNNTGG 2 cut(s) 249, 1092
AccI GTMKAC 1 cut(s) 203
AciI CCGC 3 cut(s) 126, 451, 598
AclWI GGATC 3 cut(s) 335, 939, 1499
AcoI YGGCCR 1 cut(s) 1237
AcsI RAATTY 2 cut(s) 439, 1153
AcuI CTGAAG 4 cut(s) 996, 1111, 1459, 1530
AfaI GTAC 4 cut(s) 665, 1038, 1250, 1529
AfiI CCNNNNNNNGG 8 cut(s) 181, 198, 249, 386, 963, 1092, 1582, 1648
AgsI TTSAA 6 cut(s) 416, 433, 473, 737, 845, 987
AjnI CCWGG 8 cut(s) 299, 312, 344, 1168, 1226, 1457, 1576, 1700
AluBI AGCT 8 cut(s) 49, 105, 111, 565, 637, 1279, 1370, 1543
AluI AGCT 8 cut(s) 49, 105, 111, 565, 637, 1279, 1370, 1543
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 4 cut(s) 184, 1037, 1217, 1376
AlwI GGATC 3 cut(s) 335, 939, 1499
AoxI GGCC 5 cut(s) 297, 785, 1174, 1237, 1650
ApeKI GCWGC 3 cut(s) 128, 759, 893
ApoI RAATTY 2 cut(s) 439, 1153
ArsI GACNNNNNNTTYG 4 cut(s) 668, 700, 1375, 1407
AseI ATTAAT 1 cut(s) 627
Asp700I GAANNNNTTC 1 cut(s) 1021
Asp718I GGTACC 1 cut(s) 1248
AspLEI GCGC 3 cut(s) 403, 893, 1362
AspS9I GGNCC 8 cut(s) 157, 172, 184, 785, 974, 1175, 1428, 1698
AsuC2I CCSGG 2 cut(s) 150, 161
AsuHPI GGTGA 3 cut(s) 783, 896, 1526
AsuII TTCGAA 2 cut(s) 256, 1104
AvaII GGWCC 6 cut(s) 157, 172, 184, 974, 1428, 1698
AxyI CCTNAGG 1 cut(s) 486
BaeGI GKGCMC 1 cut(s) 656
BalI TGGCCA 1 cut(s) 1239
BanI GGYRCC 2 cut(s) 653, 1248
BanII GRGCYC 1 cut(s) 107
BbsI GAAGAC 2 cut(s) 1318, 1690
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 3 cut(s) 115, 746, 905
BccI CCATC 4 cut(s) 796, 1173, 1191, 1229
BceAI ACGGC 1 cut(s) 244
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 8 cut(s) 301, 314, 346, 1170, 1228, 1459, 1578, 1702
BcnI CCSGG 2 cut(s) 150, 161
BcoDI GTCTC 4 cut(s) 184, 1037, 1217, 1376
BfuAI ACCTGC 1 cut(s) 1588
BisI GCNGC 4 cut(s) 129, 599, 760, 894
BlsI GCNGC 4 cut(s) 130, 600, 761, 895
Bme18I GGWCC 6 cut(s) 157, 172, 184, 974, 1428, 1698
BmgT120I GGNCC 8 cut(s) 157, 172, 184, 785, 974, 1175, 1428, 1698
BmiI GGNNCC 8 cut(s) 123, 147, 159, 655, 786, 1202, 1250, 1699
BmrI ACTGGG 1 cut(s) 817
BmsI GCATC 3 cut(s) 345, 785, 1252
BmuI ACTGGG 1 cut(s) 817
BpiI GAAGAC 2 cut(s) 1318, 1690
BpmI CTGGAG 5 cut(s) 91, 97, 335, 408, 1249
Bpu14I TTCGAA 2 cut(s) 256, 1104
BpuEI CTTGAG 1 cut(s) 1595
BpuMI CCSGG 2 cut(s) 150, 161
Bsa29I ATCGAT 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 1217
BsaJI CCNNGG 8 cut(s) 5, 312, 344, 420, 1001, 1457, 1458, 1576
BsaWI WCCGGW 2 cut(s) 118, 703
BsaXI ACNNNNNCTCC 2 cut(s) 1428, 1458
Bsc4I CCNNNNNNNGG 8 cut(s) 181, 198, 249, 386, 963, 1092, 1582, 1648
Bse1I ACTGG 8 cut(s) 391, 693, 812, 1097, 1294, 1361, 1535, 1587
Bse21I CCTNAGG 1 cut(s) 486
Bse3DI GCAATG 1 cut(s) 238
BseBI CCWGG 8 cut(s) 301, 314, 346, 1170, 1228, 1459, 1578, 1702
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 8 cut(s) 5, 312, 344, 420, 1001, 1457, 1458, 1576
BseGI GGATG 5 cut(s) 57, 712, 818, 972, 1165
BseLI CCNNNNNNNGG 8 cut(s) 181, 198, 249, 386, 963, 1092, 1582, 1648
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 4 cut(s) 257, 477, 557, 731
BseNI ACTGG 8 cut(s) 391, 693, 812, 1097, 1294, 1361, 1535, 1587
BseRI GAGGAG 4 cut(s) 12, 199, 503, 1017
BseSI GKGCMC 1 cut(s) 656
BseXI GCAGC 3 cut(s) 115, 746, 905
BseYI CCCAGC 1 cut(s) 794
BshFI GGCC 5 cut(s) 299, 787, 1176, 1239, 1652
BshNI GGYRCC 2 cut(s) 653, 1248
BshVI ATCGAT 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 107
BsiSI CCGG 4 cut(s) 119, 149, 161, 704
BslFI GGGAC 2 cut(s) 295, 1589
BslI CCNNNNNNNGG 8 cut(s) 181, 198, 249, 386, 963, 1092, 1582, 1648
BsmAI GTCTC 4 cut(s) 184, 1037, 1217, 1376
BsmBI CGTCTC 1 cut(s) 1037
BsmFI GGGAC 2 cut(s) 295, 1589
BsmI GAATGC 3 cut(s) 774, 873, 1479
BsnI GGCC 5 cut(s) 299, 787, 1176, 1239, 1652
Bso31I GGTCTC 1 cut(s) 1217
Bsp119I TTCGAA 2 cut(s) 256, 1104
Bsp1286I GDGCHC 2 cut(s) 107, 656
Bsp143I GATC 7 cut(s) 262, 340, 578, 829, 931, 1465, 1504
Bsp19I CCATGG 1 cut(s) 5
BspACI CCGC 3 cut(s) 126, 451, 598
BspANI GGCC 5 cut(s) 299, 787, 1176, 1239, 1652
BspCNI CTCAG 4 cut(s) 258, 478, 558, 730
BspDI ATCGAT 1 cut(s) 339
BspLI GGNNCC 8 cut(s) 123, 147, 159, 655, 786, 1202, 1250, 1699
BspMI ACCTGC 1 cut(s) 1588
BspPI GGATC 3 cut(s) 335, 939, 1499
BspQI GCTCTTC 1 cut(s) 555
BspT104I TTCGAA 2 cut(s) 256, 1104
BspT107I GGYRCC 2 cut(s) 653, 1248
BspTNI GGTCTC 1 cut(s) 1217
BsrDI GCAATG 1 cut(s) 238
BsrI ACTGG 8 cut(s) 391, 693, 812, 1097, 1294, 1361, 1535, 1587
BssECI CCNNGG 8 cut(s) 5, 312, 344, 420, 1001, 1457, 1458, 1576
BssMI GATC 7 cut(s) 262, 340, 578, 829, 931, 1465, 1504
BssNAI GTATAC 1 cut(s) 204
BssT1I CCWWGG 3 cut(s) 5, 420, 1001
Bst1107I GTATAC 1 cut(s) 204
Bst2UI CCWGG 8 cut(s) 301, 314, 346, 1170, 1228, 1459, 1578, 1702
Bst4CI ACNGT 2 cut(s) 176, 532
Bst6I CTCTTC 3 cut(s) 217, 555, 1038
BstBI TTCGAA 2 cut(s) 256, 1104
BstC8I GCNNGC 4 cut(s) 29, 774, 1008, 1074
BstDEI CTNAG 6 cut(s) 133, 266, 486, 566, 717, 938
BstDSI CCRYGG 1 cut(s) 5
BstENI CCTNNNNNAGG 1 cut(s) 196
BstF5I GGATG 5 cut(s) 57, 712, 818, 972, 1165
BstHHI GCGC 3 cut(s) 403, 893, 1362
BstKTI GATC 7 cut(s) 265, 343, 581, 832, 934, 1468, 1507
BstMAI GTCTC 4 cut(s) 184, 1037, 1217, 1376
BstMBI GATC 7 cut(s) 262, 340, 578, 829, 931, 1465, 1504
BstMWI GCNNNNNNNGC 3 cut(s) 398, 1540, 1658
BstNI CCWGG 8 cut(s) 301, 314, 346, 1170, 1228, 1459, 1578, 1702
BstNSI RCATGY 1 cut(s) 1389
BstSLI GKGCMC 1 cut(s) 656
BstV1I GCAGC 3 cut(s) 115, 746, 905
BstV2I GAAGAC 2 cut(s) 1318, 1690
BstX2I RGATCY 1 cut(s) 931
BstXI CCANNNNNNTGG 1 cut(s) 1172
BstYI RGATCY 1 cut(s) 931
BstZ17I GTATAC 1 cut(s) 204
Bsu15I ATCGAT 1 cut(s) 339
Bsu36I CCTNAGG 1 cut(s) 486
BsuRI GGCC 5 cut(s) 299, 787, 1176, 1239, 1652
BsuTUI ATCGAT 1 cut(s) 339
BtgI CCRYGG 1 cut(s) 5
BtsCI GGATG 5 cut(s) 57, 712, 818, 972, 1165
BtsI GCAGTG 1 cut(s) 562
BtsIMutI CAGTG 2 cut(s) 562, 1287
BveI ACCTGC 1 cut(s) 1588
Cac8I GCNNGC 4 cut(s) 29, 774, 1008, 1074
CfoI GCGC 3 cut(s) 403, 893, 1362
Cfr13I GGNCC 8 cut(s) 157, 172, 184, 785, 974, 1175, 1428, 1698
ClaI ATCGAT 1 cut(s) 339
Csp6I GTAC 4 cut(s) 664, 1037, 1249, 1528
CviAII CATG 6 cut(s) 6, 100, 1270, 1297, 1363, 1386
CviQI GTAC 4 cut(s) 664, 1037, 1249, 1528
DdeI CTNAG 6 cut(s) 133, 266, 486, 566, 717, 938
DpnI GATC 7 cut(s) 264, 342, 580, 831, 933, 1467, 1506
DpnII GATC 7 cut(s) 262, 340, 578, 829, 931, 1465, 1504
EaeI YGGCCR 1 cut(s) 1237
Eam1104I CTCTTC 3 cut(s) 217, 555, 1038
EarI CTCTTC 3 cut(s) 217, 555, 1038
Ecl136II GAGCTC 1 cut(s) 105
Eco130I CCWWGG 3 cut(s) 5, 420, 1001
Eco147I AGGCCT 2 cut(s) 299, 1652
Eco24I GRGCYC 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 1217
Eco47I GGWCC 6 cut(s) 157, 172, 184, 974, 1428, 1698
Eco53kI GAGCTC 1 cut(s) 105
Eco57I CTGAAG 4 cut(s) 996, 1111, 1459, 1530
Eco81I CCTNAGG 1 cut(s) 486
EcoICRI GAGCTC 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 974
EcoRI GAATTC 1 cut(s) 1153
EcoRII CCWGG 8 cut(s) 299, 312, 344, 1168, 1226, 1457, 1576, 1700
EcoT14I CCWWGG 3 cut(s) 5, 420, 1001
EcoT38I GRGCYC 1 cut(s) 107
ErhI CCWWGG 3 cut(s) 5, 420, 1001
Esp3I CGTCTC 1 cut(s) 1037
FaeI CATG 6 cut(s) 9, 103, 1273, 1300, 1366, 1389
FaqI GGGAC 2 cut(s) 295, 1589
FatI CATG 6 cut(s) 5, 99, 1269, 1296, 1362, 1385
FauI CCCGC 2 cut(s) 133, 444
FauNDI CATATG 1 cut(s) 517
FblI GTMKAC 1 cut(s) 203
Fnu4HI GCNGC 4 cut(s) 129, 599, 760, 894
FokI GGATG 5 cut(s) 44, 719, 825, 979, 1152
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 4 cut(s) 129, 599, 760, 894
GlaI GCGC 3 cut(s) 402, 892, 1361
GluI GCNGC 4 cut(s) 129, 599, 760, 894
GsaI CCCAGC 1 cut(s) 798
GsuI CTGGAG 5 cut(s) 91, 97, 335, 408, 1249
HaeIII GGCC 5 cut(s) 299, 787, 1176, 1239, 1652
HapII CCGG 4 cut(s) 119, 149, 161, 704
HhaI GCGC 3 cut(s) 403, 893, 1362
Hin1II CATG 6 cut(s) 9, 103, 1273, 1300, 1366, 1389
Hin6I GCGC 3 cut(s) 401, 891, 1360
HinP1I GCGC 3 cut(s) 401, 891, 1360
HincII GTYRAC 1 cut(s) 1284
HindII GTYRAC 1 cut(s) 1284
HinfI GANTC 5 cut(s) 416, 522, 616, 1082, 1293
HpaII CCGG 4 cut(s) 119, 149, 161, 704
HphI GGTGA 3 cut(s) 783, 896, 1526
Hpy166II GTNNAC 6 cut(s) 139, 204, 526, 701, 1039, 1284
Hpy188I TCNGA 5 cut(s) 42, 69, 184, 198, 267
Hpy188III TCNNGA 7 cut(s) 114, 155, 275, 922, 1014, 1340, 1508
Hpy8I GTNNAC 6 cut(s) 139, 204, 526, 701, 1039, 1284
HpyAV CCTTC 4 cut(s) 510, 831, 922, 1505
HpyCH4III ACNGT 2 cut(s) 176, 532
HpyCH4V TGCA 5 cut(s) 336, 509, 555, 762, 871
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 1540, 1658
HpyF3I CTNAG 6 cut(s) 133, 266, 486, 566, 717, 938
Hsp92II CATG 6 cut(s) 9, 103, 1273, 1300, 1366, 1389
HspAI GCGC 3 cut(s) 401, 891, 1360
KpnI GGTACC 1 cut(s) 1252
Kzo9I GATC 7 cut(s) 262, 340, 578, 829, 931, 1465, 1504
LguI GCTCTTC 1 cut(s) 555
LmnI GCTCC 8 cut(s) 36, 110, 116, 389, 1189, 1200, 1367, 1436
Lsp1109I GCAGC 3 cut(s) 115, 746, 905
LweI GCATC 3 cut(s) 345, 785, 1252
MaeIII GTNAC 1 cut(s) 1469
MalI GATC 7 cut(s) 264, 342, 580, 831, 933, 1467, 1506
MboI GATC 7 cut(s) 262, 340, 578, 829, 931, 1465, 1504
MflI RGATCY 1 cut(s) 931
MhlI GDGCHC 2 cut(s) 107, 656
MlsI TGGCCA 1 cut(s) 1239
MluCI AATT 7 cut(s) 404, 439, 1153, 1184, 1414, 1423, 1498
MluNI TGGCCA 1 cut(s) 1239
MlyI GAGTC 2 cut(s) 531, 625
Mox20I TGGCCA 1 cut(s) 1239
MroXI GAANNNNTTC 1 cut(s) 1021
MscI TGGCCA 1 cut(s) 1239
MseI TTAA 5 cut(s) 219, 294, 443, 459, 627
MslI CAYNNNNRTG 5 cut(s) 659, 672, 767, 852, 1170
Msp20I TGGCCA 1 cut(s) 1239
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 4 cut(s) 119, 149, 161, 704
Mva1269I GAATGC 3 cut(s) 774, 873, 1479
MvaI CCWGG 8 cut(s) 301, 314, 346, 1170, 1228, 1459, 1578, 1702
MwoI GCNNNNNNNGC 3 cut(s) 398, 1540, 1658
NciI CCSGG 2 cut(s) 150, 161
NcoI CCATGG 1 cut(s) 5
NdeI CATATG 1 cut(s) 517
NdeII GATC 7 cut(s) 262, 340, 578, 829, 931, 1465, 1504
NlaIII CATG 6 cut(s) 9, 103, 1273, 1300, 1366, 1389
NlaIV GGNNCC 8 cut(s) 123, 147, 159, 655, 786, 1202, 1250, 1699
NspI RCATGY 1 cut(s) 1389
NspV TTCGAA 2 cut(s) 256, 1104
PasI CCCWGGG 1 cut(s) 1458
PceI AGGCCT 2 cut(s) 299, 1652
PciSI GCTCTTC 1 cut(s) 555
PctI GAATGC 3 cut(s) 774, 873, 1479
PdmI GAANNNNTTC 1 cut(s) 1021
PfeI GAWTC 3 cut(s) 416, 1082, 1293
PflFI GACNNNGTC 1 cut(s) 176
PflMI CCANNNNNTGG 2 cut(s) 249, 1092
PfoI TCCNGGA 1 cut(s) 1700
PkrI GCNGC 4 cut(s) 130, 600, 761, 895
PleI GAGTC 2 cut(s) 530, 624
PpsI GAGTC 2 cut(s) 530, 624
PpuMI RGGWCCY 1 cut(s) 974
PshBI ATTAAT 1 cut(s) 627
Psp124BI GAGCTC 1 cut(s) 107
Psp5II RGGWCCY 1 cut(s) 974
Psp6I CCWGG 8 cut(s) 299, 312, 344, 1168, 1226, 1457, 1576, 1700
PspFI CCCAGC 1 cut(s) 794
PspGI CCWGG 8 cut(s) 299, 312, 344, 1168, 1226, 1457, 1576, 1700
PspN4I GGNNCC 8 cut(s) 123, 147, 159, 655, 786, 1202, 1250, 1699
PspPI GGNCC 8 cut(s) 157, 172, 184, 785, 974, 1175, 1428, 1698
PspPPI RGGWCCY 1 cut(s) 974
PsuI RGATCY 1 cut(s) 931
PsyI GACNNNGTC 1 cut(s) 176
RsaI GTAC 4 cut(s) 665, 1038, 1250, 1529
RsaNI GTAC 4 cut(s) 664, 1037, 1249, 1528
RseI CAYNNNNRTG 5 cut(s) 659, 672, 767, 852, 1170
SacI GAGCTC 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 5 cut(s) 219, 294, 443, 459, 627
SatI GCNGC 4 cut(s) 129, 599, 760, 894
Sau3AI GATC 7 cut(s) 262, 340, 578, 829, 931, 1465, 1504
Sau96I GGNCC 8 cut(s) 157, 172, 184, 785, 974, 1175, 1428, 1698
SchI GAGTC 2 cut(s) 531, 625
SduI GDGCHC 2 cut(s) 107, 656
SfaNI GCATC 3 cut(s) 345, 785, 1252
SfuI TTCGAA 2 cut(s) 256, 1104
SinI GGWCC 6 cut(s) 157, 172, 184, 974, 1428, 1698
SmiMI CAYNNNNRTG 5 cut(s) 659, 672, 767, 852, 1170
SmlI CTYRAG 1 cut(s) 1610
SmoI CTYRAG 1 cut(s) 1610
Sse9I AATT 7 cut(s) 404, 439, 1153, 1184, 1414, 1423, 1498
SseBI AGGCCT 2 cut(s) 299, 1652
SsiI CCGC 3 cut(s) 126, 451, 598
SstI GAGCTC 1 cut(s) 107
StuI AGGCCT 2 cut(s) 299, 1652
StyI CCWWGG 3 cut(s) 5, 420, 1001
TaaI ACNGT 2 cut(s) 176, 532
TaqI TCGA 5 cut(s) 256, 339, 1104, 1339, 1655
TaqII GACCGA 1 cut(s) 571
TasI AATT 7 cut(s) 404, 439, 1153, 1184, 1414, 1423, 1498
TauI GCSGC 1 cut(s) 601
TfiI GAWTC 3 cut(s) 416, 1082, 1293
Tru1I TTAA 5 cut(s) 219, 294, 443, 459, 627
Tru9I TTAA 5 cut(s) 219, 294, 443, 459, 627
TscAI CASTG 2 cut(s) 562, 1294
TseI GCWGC 3 cut(s) 128, 759, 893
TspDTI ATGAA 5 cut(s) 77, 813, 1074, 1285, 1286
TspRI CASTG 2 cut(s) 562, 1294
Tth111I GACNNNGTC 1 cut(s) 176
Van91I CCANNNNNTGG 2 cut(s) 249, 1092
VpaK11BI GGWCC 6 cut(s) 157, 172, 184, 974, 1428, 1698
VspI ATTAAT 1 cut(s) 627
XagI CCTNNNNNAGG 1 cut(s) 196
XapI RAATTY 2 cut(s) 439, 1153
XceI RCATGY 1 cut(s) 1389
XmiI GTMKAC 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.