RLG00000010549

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017012
Physical Location & Seq
Forward (+)
2559257 .. 2560687
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010549

Sequence Viewer

Length: 837 bp
ATGGAGAAGAAGAGAAGAATTATCAAACTTGACCATCAGGATTCGAAGTCGGAACTTCAAGTCGAGGGATTTAAAGAAGATAGGATAAGTGAATTGCCGGATTCAGTACTTTGTCACATATTTTCGTTCCTTCCGACTTTATATGTGGTGCGGACCACCGTTTTGTCTACGAGATGGAACAACTTATGGATTTCTGTTCCGAGCTTAGATTTCAACCAGACGGATTTCCCTGGACTCCGAGGATGGCTTGCATTGAGGACATTTGTAGATCGCGTGCTTTCTGTACGCGACTCATCACACATTGAAAGGTTCCATCTTTTTTGTTGTTCTTTTGGATTTGAAGAGAAAGATTTCCGTCTTTTTGATCCCTGGACATTCACTGAGAACAGGAATGATGTTTTTGAACTTGACTTTTGTATTGTTGCCGATCATCGTCTTCGGAAATTAGAGTTGAGATTGTCTCAAAGGATCTTTATTTACAATACAAAGCTTGTTCTAGACTTGGTTTCAAAATGTAGTATTAGTCCAGGTTGTTTCCCTAGTAGTCTCAAGTCCCTCAGTGACTTGATGGGATTTCTTAATCTCAACTTTCCAGCAGTTGAAGAAGACATGGTTATAGATGGCAGTTTTAAACAACCTTTCGATTACTACATCTCTAGAAAAGAACTAAAGACATTGTTAACAAGTTTCATCATCCAAGATAATGAAGAACCATCCACCATTTATCTCAATGCTCCAAATCTCGAAAATCTTGTCATTCAGGGCCCGGCTAAAGATTTGCCTAACTATGTTTTGGAGAATGTATCTTCCTTGGCTGTTACTCCTGTTAGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

279

Amino Acids

32.26

Weight (kDa)

5.27

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 68 4e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 167
AccII CGCG 2 cut(s) 273, 288
AciI CCGC 1 cut(s) 151
AclWI GGATC 2 cut(s) 359, 476
AfaI GTAC 2 cut(s) 108, 285
AgsI TTSAA 7 cut(s) 59, 214, 305, 341, 404, 510, 602
AjnI CCWGG 3 cut(s) 229, 368, 526
AluBI AGCT 2 cut(s) 204, 490
AluI AGCT 2 cut(s) 204, 490
Alw26I GTCTC 2 cut(s) 465, 551
AlwI GGATC 2 cut(s) 359, 476
AoxI GGCC 1 cut(s) 763
ApaI GGGCCC 1 cut(s) 767
ArsI GACNNNNNNTTYG 4 cut(s) 145, 177, 738, 770
Asp700I GAANNNNTTC 1 cut(s) 350
AspS9I GGNCC 3 cut(s) 153, 763, 764
AsuC2I CCSGG 1 cut(s) 767
AsuII TTCGAA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 767
BanII GRGCYC 1 cut(s) 767
BbsI GAAGAC 2 cut(s) 428, 612
BccI CCATC 7 cut(s) 42, 168, 237, 321, 562, 614, 721
BciT130I CCWGG 3 cut(s) 231, 370, 528
BcnI CCSGG 1 cut(s) 767
BcoDI GTCTC 2 cut(s) 465, 551
BfaI CTAG 3 cut(s) 497, 540, 657
BmcAI AGTACT 1 cut(s) 108
Bme1390I CCNGG 4 cut(s) 231, 370, 528, 767
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 3 cut(s) 153, 763, 764
BmiI GGNNCC 2 cut(s) 311, 765
BmrFI CCNGG 4 cut(s) 231, 370, 528, 767
BpiI GAAGAC 2 cut(s) 428, 612
BplI GAGNNNNNCTC 2 cut(s) 445, 477
Bpu14I TTCGAA 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 533
BpuMI CCSGG 1 cut(s) 767
BsaJI CCNNGG 4 cut(s) 229, 238, 368, 810
BseBI CCWGG 3 cut(s) 231, 370, 528
BseDI CCNNGG 4 cut(s) 229, 238, 368, 810
BseGI GGATG 3 cut(s) 248, 693, 713
BseMII CTCAG 2 cut(s) 372, 571
BseSI GKGCMC 1 cut(s) 767
Bsh1236I CGCG 2 cut(s) 273, 288
BshFI GGCC 1 cut(s) 765
BsiSI CCGG 2 cut(s) 98, 767
BslFI GGGAC 1 cut(s) 538
BsmAI GTCTC 2 cut(s) 465, 551
BsmFI GGGAC 1 cut(s) 538
BsnI GGCC 1 cut(s) 765
Bsp119I TTCGAA 1 cut(s) 44
Bsp120I GGGCCC 1 cut(s) 763
Bsp1286I GDGCHC 1 cut(s) 767
Bsp143I GATC 4 cut(s) 268, 364, 427, 468
BspACI CCGC 1 cut(s) 151
BspANI GGCC 1 cut(s) 765
BspCNI CTCAG 2 cut(s) 373, 570
BspFNI CGCG 2 cut(s) 273, 288
BspLI GGNNCC 2 cut(s) 311, 765
BspPI GGATC 2 cut(s) 359, 476
BspT104I TTCGAA 1 cut(s) 44
BssECI CCNNGG 4 cut(s) 229, 238, 368, 810
BssMI GATC 4 cut(s) 268, 364, 427, 468
BssT1I CCWWGG 1 cut(s) 810
Bst2UI CCWGG 3 cut(s) 231, 370, 528
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 2 cut(s) 5, 336
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 249, 275
BstDEI CTNAG 3 cut(s) 205, 381, 557
BstF5I GGATG 3 cut(s) 248, 693, 713
BstFNI CGCG 2 cut(s) 273, 288
BstKTI GATC 4 cut(s) 271, 367, 430, 471
BstMAI GTCTC 2 cut(s) 465, 551
BstMBI GATC 4 cut(s) 268, 364, 427, 468
BstNI CCWGG 3 cut(s) 231, 370, 528
BstSCI CCNGG 4 cut(s) 229, 368, 526, 765
BstSLI GKGCMC 1 cut(s) 767
BstUI CGCG 2 cut(s) 273, 288
BstV2I GAAGAC 2 cut(s) 428, 612
BstX2I RGATCY 1 cut(s) 468
BstYI RGATCY 1 cut(s) 468
BsuRI GGCC 1 cut(s) 765
BtsCI GGATG 3 cut(s) 248, 693, 713
BtsIMutI CAGTG 2 cut(s) 378, 565
Cac8I GCNNGC 2 cut(s) 249, 275
Cfr13I GGNCC 3 cut(s) 153, 763, 764
Csp6I GTAC 2 cut(s) 107, 284
CviAII CATG 1 cut(s) 610
CviJI RGCY 6 cut(s) 204, 247, 490, 765, 770, 815
CviKI_1 RGCY 6 cut(s) 204, 247, 490, 765, 770, 815
CviQI GTAC 2 cut(s) 107, 284
DdeI CTNAG 3 cut(s) 205, 381, 557
DpnI GATC 4 cut(s) 270, 366, 429, 470
DpnII GATC 4 cut(s) 268, 364, 427, 468
DraI TTTAAA 2 cut(s) 73, 631
Eam1104I CTCTTC 2 cut(s) 5, 336
EarI CTCTTC 2 cut(s) 5, 336
Eco130I CCWWGG 1 cut(s) 810
Eco24I GRGCYC 1 cut(s) 767
Eco47I GGWCC 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 763
EcoRII CCWGG 3 cut(s) 229, 368, 526
EcoT14I CCWWGG 1 cut(s) 810
EcoT38I GRGCYC 1 cut(s) 767
ErhI CCWWGG 1 cut(s) 810
FaeI CATG 1 cut(s) 613
FaiI YATR 7 cut(s) 119, 142, 144, 187, 611, 617, 789
FaqI GGGAC 1 cut(s) 538
FatI CATG 1 cut(s) 609
FblI GTMKAC 1 cut(s) 167
FokI GGATG 3 cut(s) 255, 680, 700
FriOI GRGCYC 1 cut(s) 767
FspBI CTAG 3 cut(s) 497, 540, 657
HaeIII GGCC 1 cut(s) 765
HapII CCGG 2 cut(s) 98, 767
Hin1II CATG 1 cut(s) 613
HincII GTYRAC 1 cut(s) 681
HindII GTYRAC 1 cut(s) 681
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 4 cut(s) 41, 101, 234, 290
HpaI GTTAAC 1 cut(s) 681
HpaII CCGG 2 cut(s) 98, 767
Hpy166II GTNNAC 2 cut(s) 168, 681
Hpy188I TCNGA 5 cut(s) 52, 135, 201, 239, 441
Hpy188III TCNNGA 4 cut(s) 38, 497, 657, 743
Hpy8I GTNNAC 2 cut(s) 168, 681
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 251
HpyF3I CTNAG 3 cut(s) 205, 381, 557
Hsp92II CATG 1 cut(s) 613
KspAI GTTAAC 1 cut(s) 681
Kzo9I GATC 4 cut(s) 268, 364, 427, 468
LmnI GCTCC 1 cut(s) 739
MaeI CTAG 3 cut(s) 497, 540, 657
MaeIII GTNAC 3 cut(s) 113, 560, 817
MalI GATC 4 cut(s) 270, 366, 429, 470
MboI GATC 4 cut(s) 268, 364, 427, 468
MflI RGATCY 1 cut(s) 468
MhlI GDGCHC 1 cut(s) 767
MluCI AATT 3 cut(s) 18, 92, 443
MlyI GAGTC 2 cut(s) 228, 284
MmeI TCCRAC 2 cut(s) 30, 158
MnlI CCTC 4 cut(s) 58, 233, 249, 566
MroXI GAANNNNTTC 1 cut(s) 350
MseI TTAA 4 cut(s) 72, 579, 630, 680
MspI CCGG 2 cut(s) 98, 767
MspR9I CCNGG 4 cut(s) 231, 370, 528, 767
MvaI CCWGG 3 cut(s) 231, 370, 528
MvnI CGCG 2 cut(s) 273, 288
NciI CCSGG 1 cut(s) 767
NdeII GATC 4 cut(s) 268, 364, 427, 468
NlaIII CATG 1 cut(s) 613
NlaIV GGNNCC 2 cut(s) 311, 765
NmuCI GTSAC 2 cut(s) 113, 560
NspV TTCGAA 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 350
PfeI GAWTC 2 cut(s) 41, 101
PleI GAGTC 2 cut(s) 228, 284
PpsI GAGTC 2 cut(s) 228, 284
Psp6I CCWGG 3 cut(s) 229, 368, 526
PspGI CCWGG 3 cut(s) 229, 368, 526
PspN4I GGNNCC 2 cut(s) 311, 765
PspOMI GGGCCC 1 cut(s) 763
PspPI GGNCC 3 cut(s) 153, 763, 764
PsuI RGATCY 1 cut(s) 468
RsaI GTAC 2 cut(s) 108, 285
RsaNI GTAC 2 cut(s) 107, 284
SaqAI TTAA 4 cut(s) 72, 579, 630, 680
Sau3AI GATC 4 cut(s) 268, 364, 427, 468
Sau96I GGNCC 3 cut(s) 153, 763, 764
ScaI AGTACT 1 cut(s) 108
SchI GAGTC 2 cut(s) 228, 284
ScrFI CCNGG 4 cut(s) 231, 370, 528, 767
SduI GDGCHC 1 cut(s) 767
SetI ASST 5 cut(s) 206, 311, 492, 532, 640
SfuI TTCGAA 1 cut(s) 44
SinI GGWCC 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 3 cut(s) 18, 92, 443
SsiI CCGC 1 cut(s) 151
SspMI CTAG 3 cut(s) 497, 540, 657
StyD4I CCNGG 4 cut(s) 229, 368, 526, 765
StyI CCWWGG 1 cut(s) 810
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 4 cut(s) 44, 63, 642, 744
TasI AATT 3 cut(s) 18, 92, 443
TatI WGTACW 1 cut(s) 106
TfiI GAWTC 2 cut(s) 41, 101
Tru1I TTAA 4 cut(s) 72, 579, 630, 680
Tru9I TTAA 4 cut(s) 72, 579, 630, 680
TscAI CASTG 2 cut(s) 385, 565
TseFI GTSAC 2 cut(s) 113, 560
Tsp45I GTSAC 2 cut(s) 113, 560
TspDTI ATGAA 2 cut(s) 679, 720
TspGWI ACGGA 2 cut(s) 236, 344
TspRI CASTG 2 cut(s) 385, 565
VpaK11BI GGWCC 1 cut(s) 153
XbaI TCTAGA 2 cut(s) 496, 656
XmiI GTMKAC 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 3 cut(s) 497, 540, 657
ZrmI AGTACT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.