Rorug04G0147900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0017012
Physical Location & Seq
Reverse (-)
25955897 .. 25958283
2387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0147900.1

Sequence Viewer

Length: 270 bp
ATGAAATTGGCTGTTAATCTGAAAGATGAAAGCTTGAGAGTTGAATGCTTTCCTGGGACGAAGGAGCAGCTGGGATATGTTGTTCAGTGTGACTGGGAGGTGATATTTGGTGTTTTTGGCTTTTATTTCATAGTTCAGTCATCGGAGTACAACCCAATCTACTTGCAGCGGAGAGTTGACAACATTATCAATGGTCTGGAAGACATTTTGGTAAGCATTCGAGGTTCCTTTCATATACTGCTAGTGAGTAGTGCCTTAAGAGCTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

89

Amino Acids

10.23

Weight (kDa)

5.71

Isoelectric Point (pI)

59.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PqqF-like_C_4 PF22456 20 - 71 2.9e-09 PQQ synthase PqqF-like, C-terminal lobe domain 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 169
AfaI GTAC 1 cut(s) 149
AflII CTTAAG 1 cut(s) 256
AgsI TTSAA 1 cut(s) 44
AjnI CCWGG 1 cut(s) 52
AloI GAACNNNNNNTCC 2 cut(s) 66, 98
AluBI AGCT 3 cut(s) 33, 70, 263
AluI AGCT 3 cut(s) 33, 70, 263
ApeKI GCWGC 2 cut(s) 67, 166
Asp700I GAANNNNTTC 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 79, 178
BciT130I CCWGG 1 cut(s) 54
BfaI CTAG 2 cut(s) 242, 264
BfrI CTTAAG 1 cut(s) 256
BisI GCNGC 2 cut(s) 68, 167
BlsI GCNGC 2 cut(s) 69, 168
Bme1390I CCNGG 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 54
BmrI ACTGGG 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 79, 178
BseYI CCCAGC 1 cut(s) 70
BslFI GGGAC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 70
BsmI GAATGC 2 cut(s) 50, 216
BspACI CCGC 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 226
BspTI CTTAAG 1 cut(s) 256
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 54
BstAFI CTTAAG 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 79, 178
BstV2I GAAGAC 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 92
Csp6I GTAC 1 cut(s) 148
CviJI RGCY 5 cut(s) 11, 33, 70, 120, 263
CviKI_1 RGCY 5 cut(s) 11, 33, 70, 120, 263
CviQI GTAC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 52
FaiI YATR 4 cut(s) 78, 131, 234, 236
FaqI GGGAC 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 68, 167
Fsp4HI GCNGC 2 cut(s) 68, 167
FspBI CTAG 2 cut(s) 242, 264
GluI GCNGC 2 cut(s) 68, 167
GsaI CCCAGC 1 cut(s) 74
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 31
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 21, 145
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 55
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 5 cut(s) 39, 56, 66, 79, 182
Lsp1109I GCAGC 2 cut(s) 79, 178
MaeI CTAG 2 cut(s) 242, 264
MaeIII GTNAC 1 cut(s) 89
MboII GAAGA 1 cut(s) 212
MluCI AATT 1 cut(s) 5
MnlI CCTC 2 cut(s) 91, 215
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 2 cut(s) 15, 257
MspA1I CMGCKG 2 cut(s) 70, 169
MspCI CTTAAG 1 cut(s) 256
MspR9I CCNGG 1 cut(s) 54
Mva1269I GAATGC 2 cut(s) 50, 216
MvaI CCWGG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 89
PctI GAATGC 2 cut(s) 50, 216
PdmI GAANNNNTTC 1 cut(s) 48
PkrI GCNGC 2 cut(s) 69, 168
Psp6I CCWGG 1 cut(s) 52
PspFI CCCAGC 1 cut(s) 70
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 70
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 2 cut(s) 15, 257
SatI GCNGC 2 cut(s) 68, 167
ScrFI CCNGG 1 cut(s) 54
SetI ASST 5 cut(s) 35, 72, 102, 226, 265
SgeI CNNG 9 cut(s) 46, 65, 66, 83, 106, 175, 209, 233, 254
SmlI CTYRAG 2 cut(s) 34, 256
SmoI CTYRAG 2 cut(s) 34, 256
Sse9I AATT 1 cut(s) 5
SsiI CCGC 1 cut(s) 169
SspMI CTAG 2 cut(s) 242, 264
StyD4I CCNGG 1 cut(s) 52
TaqI TCGA 1 cut(s) 220
TasI AATT 1 cut(s) 5
TatI WGTACW 1 cut(s) 147
Tru1I TTAA 2 cut(s) 15, 257
Tru9I TTAA 2 cut(s) 15, 257
TscAI CASTG 1 cut(s) 92
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 2 cut(s) 67, 166
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 4 cut(s) 17, 42, 118, 221
TspRI CASTG 1 cut(s) 92
Vha464I CTTAAG 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 2 cut(s) 242, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.