Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011978.1

Orthogroup ID

OG0017012

Physical Location & Seq

Genomic Coordinates Reverse (-)

353 .. 964

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011978.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggtcaaagctgagatccatttaatccatggtgatagcggagggaatatttatcatgttgaaagggcacctcctttgctagaaggagtctcgggtgttaaatatttgtctcttttaactcctatgttttcggcacgttctctgccttccttcgataatttgaagcatttgaaggttggcctgtttcgttgctcttattggggatatgtaatcgagctgctcaagagatcaccaaatctggaagatattgttttggatatttggacttggacatggcgtaaacaagaatatgtgaaagggtaccggcccttcaatccaccagaggctgttcctatttgtgtttcctcgcacctcaggaccatttctatcattaatttcatgggatatgatgatgagtttgaagtggtcaaatatttgttgcagtatagtgaagttcttaggtggttaactgtttcaacccttgagagtcatctttttaagagtcatcgaatgacagcagagaagttgcataagaaagctttgaagtttcaaaaatgctccaagacttgtgagattgaaataattatcaactccgagactgaccggcacaaaaactgtagttgtcatttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

203

Amino Acids

23.63

Weight (kDa)

8.67

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017012)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0309621
rosa_laevigata	RLG00000010549
rosa_multiflora	Rmu_co8441039.1_g000001 Rmu_sc0007632.1_g000004 Rmu_sc0008462.1_g000002 Rmu_sc0011978.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159280
rosa_rugosa	Rorug04G0147900 Rorug06G0373200
rosa_samantha	Rh6AG486800 Rh6BG496400 Rh6CG501100 Rh6DG487300
rosa_wichuraiana	Rw6G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	300
AccB1I	GGYRCC	2 cut(s)	67, 300
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	10
AfaI	GTAC	1 cut(s)	302
AgsI	TTSAA	9 cut(s)	62, 163, 172, 313, 401, 456, 523, 530, 557
AluBI	AGCT	3 cut(s)	11, 217, 518
AluI	AGCT	3 cut(s)	11, 217, 518
Alw26I	GTCTC	3 cut(s)	94, 114, 569
AlwI	GGATC	1 cut(s)	10
AlwNI	CAGNNNCTG	1 cut(s)	326
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	2 cut(s)	178, 305
ApeKI	GCWGC	1 cut(s)	217
AseI	ATTAAT	1 cut(s)	372
Asp718I	GGTACC	1 cut(s)	300
AspS9I	GGNCC	2 cut(s)	306, 357
AsuHPI	GGTGA	2 cut(s)	44, 222
AvaI	CYCGRG	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	357
AxyI	CCTNAGG	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	70
BanI	GGYRCC	2 cut(s)	67, 300
BarI	GAAGNNNNNNTAC	2 cut(s)	293, 325
BbvI	GCAGC	1 cut(s)	204
BcoDI	GTCTC	3 cut(s)	94, 114, 569
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	595
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	306, 357
BmiI	GGNNCC	2 cut(s)	69, 302
BpuEI	CTTGAG	2 cut(s)	206, 482
BsaJI	CCNNGG	1 cut(s)	28
Bse118I	RCCGGY	2 cut(s)	303, 582
Bse21I	CCTNAGG	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	367
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	204
BshFI	GGCC	2 cut(s)	180, 307
BshNI	GGYRCC	2 cut(s)	67, 300
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	304, 583
BsmAI	GTCTC	3 cut(s)	94, 114, 569
BsnI	GGCC	2 cut(s)	180, 307
BsoBI	CYCGRG	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	15, 227
Bsp19I	CCATGG	1 cut(s)	28
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	180, 307
BspCNI	CTCAG	2 cut(s)	4, 366
BspLI	GGNNCC	2 cut(s)	69, 302
BspPI	GGATC	1 cut(s)	10
BspT107I	GGYRCC	2 cut(s)	67, 300
BsrFI	RCCGGY	2 cut(s)	303, 582
BssAI	RCCGGY	2 cut(s)	303, 582
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	2 cut(s)	15, 227
BssT1I	CCWWGG	1 cut(s)	28
Bst4CI	ACNGT	2 cut(s)	451, 596
BstDEI	CTNAG	3 cut(s)	12, 353, 437
BstDSI	CCRYGG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	18, 230
BstMAI	GTCTC	3 cut(s)	94, 114, 569
BstMBI	GATC	2 cut(s)	15, 227
BstSFI	CTRYAG	1 cut(s)	595
BstSLI	GKGCMC	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
Bsu36I	CCTNAGG	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	180, 307
BtgI	CCRYGG	1 cut(s)	28
CaiI	CAGNNNCTG	1 cut(s)	326
Cfr10I	RCCGGY	2 cut(s)	303, 582
Cfr13I	GGNCC	2 cut(s)	306, 357
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	4 cut(s)	29, 56, 273, 379
CviJI	RGCY	6 cut(s)	11, 180, 217, 307, 326, 518
CviKI_1	RGCY	6 cut(s)	11, 180, 217, 307, 326, 518
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	3 cut(s)	12, 353, 437
DpnI	GATC	2 cut(s)	17, 229
DpnII	GATC	2 cut(s)	15, 227
Eco130I	CCWWGG	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	357
Eco81I	CCTNAGG	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	4 cut(s)	32, 59, 276, 382
FatI	CATG	4 cut(s)	28, 55, 272, 378
Fnu4HI	GCNGC	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	218
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	1 cut(s)	218
HaeIII	GGCC	2 cut(s)	180, 307
HapII	CCGG	2 cut(s)	304, 583
Hin1II	CATG	4 cut(s)	32, 59, 276, 382
HincII	GTYRAC	1 cut(s)	447
HindII	GTYRAC	1 cut(s)	447
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	3 cut(s)	87, 466, 481
HpaI	GTTAAC	1 cut(s)	447
HpaII	CCGG	2 cut(s)	304, 583
HphI	GGTGA	2 cut(s)	44, 222
Hpy166II	GTNNAC	2 cut(s)	281, 447
Hpy188I	TCNGA	1 cut(s)	574
Hpy188III	TCNNGA	3 cut(s)	223, 239, 355
Hpy8I	GTNNAC	2 cut(s)	281, 447
HpyAV	CCTTC	5 cut(s)	77, 156, 160, 166, 319
HpyCH4III	ACNGT	2 cut(s)	451, 596
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	2 cut(s)	421, 508
HpyF3I	CTNAG	3 cut(s)	12, 353, 437
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	4 cut(s)	32, 59, 276, 382
KpnI	GGTACC	1 cut(s)	304
KspAI	GTTAAC	1 cut(s)	447
Kzo9I	GATC	2 cut(s)	15, 227
LmnI	GCTCC	1 cut(s)	542
LpnPI	CCDG	6 cut(s)	194, 224, 317, 333, 340, 596
Lsp1109I	GCAGC	1 cut(s)	204
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	136
MalI	GATC	2 cut(s)	17, 229
MboI	GATC	2 cut(s)	15, 227
MboII	GAAGA	1 cut(s)	254
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	3 cut(s)	157, 373, 561
MlyI	GAGTC	3 cut(s)	96, 475, 490
MnlI	CCTC	5 cut(s)	35, 81, 316, 355, 362
MseI	TTAA	6 cut(s)	23, 99, 116, 372, 446, 477
MspI	CCGG	2 cut(s)	304, 583
NcoI	CCATGG	1 cut(s)	28
NdeII	GATC	2 cut(s)	15, 227
NlaIII	CATG	4 cut(s)	32, 59, 276, 382
NlaIV	GGNNCC	2 cut(s)	69, 302
PkrI	GCNGC	1 cut(s)	219
PleI	GAGTC	3 cut(s)	95, 474, 489
PpsI	GAGTC	3 cut(s)	95, 474, 489
PshBI	ATTAAT	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	69, 302
PspPI	GGNCC	2 cut(s)	306, 357
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	15
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SaqAI	TTAA	6 cut(s)	23, 99, 116, 372, 446, 477
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	2 cut(s)	15, 227
Sau96I	GGNCC	2 cut(s)	306, 357
SchI	GAGTC	3 cut(s)	96, 475, 490
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	8 cut(s)	13, 73, 139, 177, 219, 354, 443, 520
SfcI	CTRYAG	1 cut(s)	595
SinI	GGWCC	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	221, 461
SmoI	CTYRAG	2 cut(s)	221, 461
Sse9I	AATT	3 cut(s)	157, 373, 561
SsiI	CCGC	1 cut(s)	39
SspI	AATATT	3 cut(s)	49, 104, 413
SspMI	CTAG	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	451, 596
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	3 cut(s)	153, 213, 487
TasI	AATT	3 cut(s)	157, 373, 561
Tru1I	TTAA	6 cut(s)	23, 99, 116, 372, 446, 477
Tru9I	TTAA	6 cut(s)	23, 99, 116, 372, 446, 477
TseI	GCWGC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	357
VspI	ATTAAT	1 cut(s)	372
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.