Rh6DG487300

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0017012
Physical Location & Seq
Reverse (-)
64873945 .. 64875613
1669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG487300.1

Sequence Viewer

Length: 468 bp
ATGGTTTACCAAGTATTAAACAAAACAAGTGAACTGCTCTTAACAGTTGACTTGACAATACAAACCTTCCAACAGCTCCCTTGGCCTCCAAATAAGATAGCAGCATCTTCATTAACAAAACAACTGAAGCTATTTCATCTTAGTAGCCTTGTCTGGTTAACGGAGTTTCTAAGGAAATCACCTAATCTAGAGTATCTTGTTCTGGATACTAGTCACCCCAAATGGAGGGATGCAGAGTATATACCAGGATATCTTAATGAGAGATATGTTCAAGGATTTGCGCCGTTCAATCCACCACAAACTGTGCCTAATTGCTTGTTGTCGCACCTCAAGACTATCTCATGGAGTACTTTCATGGGAGACAAGGAGGAGTGGGAAGCGGTCACACAAGAGGAAGCTAAGAAGTTGTGCAAAGAAATTTTAACATTTCATAAGTGTTCAAAGACTTGTGTGGTTGAAGTTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

155

Amino Acids

17.97

Weight (kDa)

6.89

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 99 - 128 2.1e-07 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 380
AcsI RAATTY 1 cut(s) 417
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 4 cut(s) 272, 289, 441, 458
AhlI ACTAGT 1 cut(s) 209
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 3 cut(s) 76, 130, 398
AluI AGCT 3 cut(s) 76, 130, 398
Alw26I GTCTC 1 cut(s) 354
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 417
AspLEI GCGC 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 171, 206
BbvI GCAGC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 246
BciVI GTATCC 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 354
BcuI ACTAGT 1 cut(s) 209
BfaI CTAG 3 cut(s) 188, 210, 466
BfuI GTATCC 1 cut(s) 199
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmcAI AGTACT 1 cut(s) 349
Bme1390I CCNGG 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 2 cut(s) 113, 220
BpuEI CTTGAG 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 225
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 383
BseXI GCAGC 1 cut(s) 113
BshFI GGCC 1 cut(s) 85
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 354
BsnI GGCC 1 cut(s) 85
BspACI CCGC 1 cut(s) 380
BspANI GGCC 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 46, 304
BstDEI CTNAG 3 cut(s) 140, 170, 399
BstF5I GGATG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 283
BstMAI GTCTC 1 cut(s) 354
BstMWI GCNNNNNNNGC 1 cut(s) 82
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 113
BsuI GTATCC 1 cut(s) 199
BsuRI GGCC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 235
CfoI GCGC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 348
CviAII CATG 2 cut(s) 342, 355
CviJI RGCY 5 cut(s) 76, 85, 130, 147, 398
CviKI_1 RGCY 5 cut(s) 76, 85, 130, 147, 398
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 3 cut(s) 140, 170, 399
Eco130I CCWWGG 1 cut(s) 80
Eco32I GATATC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 244
EcoRV GATATC 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 2 cut(s) 345, 358
FaiI YATR 6 cut(s) 240, 242, 267, 343, 356, 432
FatI CATG 2 cut(s) 341, 354
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 3 cut(s) 188, 210, 466
GlaI GCGC 1 cut(s) 282
GluI GCNGC 1 cut(s) 102
HaeIII GGCC 1 cut(s) 85
HhaI GCGC 1 cut(s) 283
Hin1II CATG 2 cut(s) 345, 358
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 2 cut(s) 49, 159
HindII GTYRAC 2 cut(s) 49, 159
HpaI GTTAAC 1 cut(s) 159
HphI GGTGA 2 cut(s) 171, 206
Hpy166II GTNNAC 4 cut(s) 7, 32, 49, 159
Hpy188III TCNNGA 3 cut(s) 188, 203, 331
Hpy8I GTNNAC 4 cut(s) 7, 32, 49, 159
HpyAV CCTTC 1 cut(s) 76
HpyCH4III ACNGT 2 cut(s) 46, 304
HpyCH4V TGCA 2 cut(s) 233, 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 82
HpyF3I CTNAG 3 cut(s) 140, 170, 399
Hsp92II CATG 2 cut(s) 345, 358
HspAI GCGC 1 cut(s) 281
KspAI GTTAAC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 4 cut(s) 139, 188, 231, 258
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 2 cut(s) 113, 220
MaeI CTAG 3 cut(s) 188, 210, 466
MaeIII GTNAC 2 cut(s) 212, 382
MboII GAAGA 1 cut(s) 99
MluCI AATT 2 cut(s) 310, 417
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 5 cut(s) 96, 219, 338, 361, 385
MseI TTAA 6 cut(s) 17, 41, 113, 158, 255, 422
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 82
NlaIII CATG 2 cut(s) 345, 358
NmuCI GTSAC 2 cut(s) 212, 382
PkrI GCNGC 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SaqAI TTAA 6 cut(s) 17, 41, 113, 158, 255, 422
SatI GCNGC 1 cut(s) 102
ScaI AGTACT 1 cut(s) 349
ScrFI CCNGG 1 cut(s) 246
SetI ASST 6 cut(s) 68, 78, 132, 184, 330, 400
SfaNI GCATC 2 cut(s) 113, 220
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SpeI ACTAGT 1 cut(s) 209
Sse9I AATT 2 cut(s) 310, 417
SsiI CCGC 1 cut(s) 380
SspMI CTAG 3 cut(s) 188, 210, 466
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 46, 304
TasI AATT 2 cut(s) 310, 417
TatI WGTACW 1 cut(s) 347
Tru1I TTAA 6 cut(s) 17, 41, 113, 158, 255, 422
Tru9I TTAA 6 cut(s) 17, 41, 113, 158, 255, 422
TseFI GTSAC 2 cut(s) 212, 382
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 2 cut(s) 212, 382
TspDTI ATGAA 4 cut(s) 99, 125, 343, 419
TspGWI ACGGA 1 cut(s) 176
XapI RAATTY 1 cut(s) 417
XbaI TCTAGA 1 cut(s) 187
XspI CTAG 3 cut(s) 188, 210, 466
ZrmI AGTACT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.