Rh6AG486800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017012
Physical Location & Seq
Reverse (-)
66511700 .. 66513990
2291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG486800.1

Sequence Viewer

Length: 444 bp
ATGCCCCAATATTCCACTGGAAACACCATGCGACGAGATTGGCGCATCTTATTCAAATCCAGCTTGATTTTTGAGTATCTTGTTCTGGATACTAGTCACCCCAAATGGAGGGATGCAGAGTATATACCAGGATATCTTAATGAGAGATATGTTCAAGGATATGCGCTGTTCAATCCACCACAAACTGTGCCTAATTGCTTGTTGTCGCACCTCAAGACTATCTCATGGAGTGCTTTCATGGGAGACAAGGAGGAGTGGGAAGCGGTGAAATATTTGTTTAAGCACGGTGAAGTTCTCAGTAAATTTACTATTTCAGCTTATGTACAGGTCACAAAAGAGGAAGCTAAGAAGTTGTGCAAAGAAATTTTAACATTGCATAAGTGTTCAAAGACTTGTGTGGTTGAAGTTATCTGGGATGTTTCTGATCGAGCTGGTCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

147

Amino Acids

17.17

Weight (kDa)

8.3

Isoelectric Point (pI)

21.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 60 - 104 3.8e-14 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 263
AcsI RAATTY 2 cut(s) 302, 363
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 5 cut(s) 55, 155, 172, 387, 404
AhlI ACTAGT 1 cut(s) 92
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 4 cut(s) 63, 317, 344, 431
AluI AGCT 4 cut(s) 63, 317, 344, 431
Alw26I GTCTC 1 cut(s) 237
ApoI RAATTY 2 cut(s) 302, 363
AspLEI GCGC 2 cut(s) 45, 166
AsuHPI GGTGA 3 cut(s) 89, 277, 299
BciT130I CCWGG 1 cut(s) 129
BciVI GTATCC 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 237
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 1 cut(s) 93
BfuI GTATCC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 2 cut(s) 54, 103
BpuEI CTTGAG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 371
BseBI CCWGG 1 cut(s) 129
BseGI GGATG 2 cut(s) 118, 421
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 310
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 237
Bsp1407I TGTACA 1 cut(s) 322
Bsp143I GATC 1 cut(s) 424
BspACI CCGC 1 cut(s) 263
BspCNI CTCAG 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 371
BsrGI TGTACA 1 cut(s) 322
BsrI ACTGG 1 cut(s) 22
BssMI GATC 1 cut(s) 424
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 187, 287
BstAUI TGTACA 1 cut(s) 322
BstDEI CTNAG 2 cut(s) 296, 345
BstF5I GGATG 2 cut(s) 118, 421
BstHHI GCGC 2 cut(s) 45, 166
BstKTI GATC 1 cut(s) 427
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 1 cut(s) 424
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BsuI GTATCC 1 cut(s) 82
BtsCI GGATG 2 cut(s) 118, 421
BtsIMutI CAGTG 1 cut(s) 15
CfoI GCGC 2 cut(s) 45, 166
Csp6I GTAC 1 cut(s) 323
CviAII CATG 3 cut(s) 28, 225, 238
CviJI RGCY 4 cut(s) 63, 317, 344, 431
CviKI_1 RGCY 4 cut(s) 63, 317, 344, 431
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 2 cut(s) 296, 345
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
Eco32I GATATC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 127
EcoRV GATATC 1 cut(s) 134
FaeI CATG 3 cut(s) 31, 228, 241
FaiI YATR 9 cut(s) 29, 123, 125, 150, 162, 226, 239, 321, 378
FatI CATG 3 cut(s) 27, 224, 237
FokI GGATG 2 cut(s) 125, 428
FspBI CTAG 1 cut(s) 93
GlaI GCGC 2 cut(s) 44, 165
HhaI GCGC 2 cut(s) 45, 166
Hin1II CATG 3 cut(s) 31, 228, 241
Hin6I GCGC 2 cut(s) 43, 164
HinP1I GCGC 2 cut(s) 43, 164
HphI GGTGA 3 cut(s) 89, 277, 299
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 2 cut(s) 86, 214
Hpy99I CGWCG 1 cut(s) 36
HpyCH4III ACNGT 2 cut(s) 187, 287
HpyCH4V TGCA 3 cut(s) 116, 357, 376
HpyF3I CTNAG 2 cut(s) 296, 345
Hsp92II CATG 3 cut(s) 31, 228, 241
HspAI GCGC 2 cut(s) 43, 164
Kzo9I GATC 1 cut(s) 424
LpnPI CCDG 8 cut(s) 3, 71, 73, 114, 141, 311, 397, 417
LweI GCATC 2 cut(s) 54, 103
MaeI CTAG 1 cut(s) 93
MaeIII GTNAC 2 cut(s) 95, 328
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MluCI AATT 3 cut(s) 193, 302, 363
MnlI CCTC 4 cut(s) 102, 221, 244, 331
MseI TTAA 3 cut(s) 138, 279, 368
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
NdeII GATC 1 cut(s) 424
NlaIII CATG 3 cut(s) 31, 228, 241
NmuCI GTSAC 2 cut(s) 95, 328
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
SaqAI TTAA 3 cut(s) 138, 279, 368
Sau3AI GATC 1 cut(s) 424
ScrFI CCNGG 1 cut(s) 129
SetI ASST 6 cut(s) 65, 213, 319, 330, 346, 433
SfaNI GCATC 2 cut(s) 54, 103
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 3 cut(s) 193, 302, 363
SsiI CCGC 1 cut(s) 263
SspI AATATT 2 cut(s) 11, 272
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 2 cut(s) 187, 287
TaqI TCGA 1 cut(s) 427
TasI AATT 3 cut(s) 193, 302, 363
TatI WGTACW 1 cut(s) 322
Tru1I TTAA 3 cut(s) 138, 279, 368
Tru9I TTAA 3 cut(s) 138, 279, 368
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 2 cut(s) 95, 328
Tsp45I GTSAC 2 cut(s) 95, 328
TspDTI ATGAA 1 cut(s) 226
TspRI CASTG 1 cut(s) 22
XapI RAATTY 2 cut(s) 302, 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 14
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.