Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017012

Physical Location & Seq

Genomic Coordinates Reverse (-)

69756928 .. 69758314

Gene Structure 1387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG496400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGAGAAGAAGAGAAGAATTATCAAACTTGAGCATCAGGATTCGAAATCAGAACTTCAAGTCGAGGGATTTGAAGAAGATAGGATAAGTGAATTGCCGGATTCAGTACTTTGTCACATACTTTCGTTCCTTCCAACTTTATATGTGGTGCGGACCACCGTTTTGTCTACGAGATGGAACAACTTATGGATTTCTGTTCCGAGCTTAGACTTCAACCACTTAGATTTCCCTGGATGCCGAGGATGGGTTGCATTGAGGACATTTGTAGATCGCGTGCTTTCAGTACGCGACTCATCACACATTGATAAGTTTCATCTTTTTGGTTGTTCTTTTGGATTTGGAGAGAAAGATTTCCGTCTTTTTGATCCCTGGACATTCACTGAGAACAGGAATGATTTTTTTGTACTTGACTTTTGTATTGCTGCCGATCATCATCTTCGGAAATTAGAGTTGAAATTGTCTCAAAGAATCTTTATTTACAATACAAAGCTTGTTCTAGAATTGGTTTCAAAATGTAGTATTACTCCAGGTTGTTTCCCTAGTAGTCTCAAGTCCCTCAGTGACTTGATGGGATTTCTTAATCTCAACTTTCCAGCAGTTGAAGAAGACATGATTATAGATGGGAGTTTTAAACAACCTTTCGATTACTACATCTCTAGAAAACAACTAAAGACATTGTCAACAAGTTTCATCATCCGAGATAATAAAGAACCATCCACCATTTATCTCAATGCTCCAAATCTCGAAAATCTTGTCATTCAGGGCCCAGCTAAAGATTTGCCTAACTATGTTTTGGAGAATGTATCTTCCTTGGTAAAAGCTGAGATTGATCTCCCTTTTGCAGATTGTTTGAGTCCCCGGGGAAGTTTATTGTTGAGTAGAATATCCGGTGTTGAATATCTGTCACTTTCAGTTCCTTGTGATCTTGTGGCAAGGTCTATTCCTGTTTTTGAAAATTTGAAGCAACTGAAGCTATTTCATCTTAGTAGCCTTGTCTGGTTAACGGAGTTTCTAAGGAAATCACCTAATCTAGAGTATCTTGTTCTGGATACTAGTCACCCCAAATGGAGGGATGCAGAGTATATACCAGGATATCTTAATGAGAGATATGTTCAAGGATTTGCGCCGTTCAATCCACCACAAACTGTGCCTAATTGCTTGTTGTCGCACCTCAAGACTATCTCATGGAGTACTTTCATGGGAGACAAGGAGGAGTGGGAAGCGGTGAAATATTTGTTTAAGCACGGTGAAGTTCTCAGTAAATTTACTATTTCAGCTTATGTACAGGTCACACAAGAGGAAGCTAAGAAGTTGTGCAAAGAAATTTTAACATTTCATAAGTGTTCAAAGACTTGTGTGGTTGAAGTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

457

Amino Acids

52.68

Weight (kDa)

6.33

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	29 - 68	1.1e-07	F-box domain
FBD	PF08387	380 - 424	2.5e-13	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017012)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0309621
rosa_laevigata	RLG00000010549
rosa_multiflora	Rmu_co8441039.1_g000001 Rmu_sc0007632.1_g000004 Rmu_sc0008462.1_g000002 Rmu_sc0011978.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159280
rosa_rugosa	Rorug04G0147900 Rorug06G0373200
rosa_samantha	Rh6AG486800 Rh6BG496400 Rh6CG501100 Rh6DG487300
rosa_wichuraiana	Rw6G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	167
AccII	CGCG	2 cut(s)	273, 288
AciI	CCGC	2 cut(s)	151, 1223
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	3 cut(s)	955, 1262, 1323
AcuI	CTGAAG	1 cut(s)	989
AfaI	GTAC	5 cut(s)	108, 285, 405, 1192, 1284
AfiI	CCNNNNNNNGG	2 cut(s)	244, 1068
AhlI	ACTAGT	1 cut(s)	1052
AjnI	CCWGG	4 cut(s)	229, 368, 526, 1087
AluBI	AGCT	7 cut(s)	204, 490, 770, 821, 973, 1277, 1304
AluI	AGCT	7 cut(s)	204, 490, 770, 821, 973, 1277, 1304
Alw26I	GTCTC	3 cut(s)	465, 551, 1197
AlwI	GGATC	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	858
AoxI	GGCC	1 cut(s)	763
ApaI	GGGCCC	1 cut(s)	767
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	3 cut(s)	955, 1262, 1323
ArsI	GACNNNNNNTTYG	4 cut(s)	145, 177, 738, 770
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	1126
AspS9I	GGNCC	3 cut(s)	153, 763, 764
AsuC2I	CCSGG	2 cut(s)	859, 860
AsuHPI	GGTGA	4 cut(s)	1014, 1049, 1237, 1259
AsuII	TTCGAA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	858
AvaII	GGWCC	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	767
BanII	GRGCYC	1 cut(s)	767
BbsI	GAAGAC	1 cut(s)	612
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	5 cut(s)	168, 237, 562, 614, 721
BceAI	ACGGC	1 cut(s)	1111
BciT130I	CCWGG	4 cut(s)	231, 370, 528, 1089
BciVI	GTATCC	1 cut(s)	1042
BcnI	CCSGG	2 cut(s)	859, 860
BcoDI	GTCTC	3 cut(s)	465, 551, 1197
BcuI	ACTAGT	1 cut(s)	1052
BfaI	CTAG	6 cut(s)	497, 540, 657, 1031, 1053, 1372
BfuI	GTATCC	1 cut(s)	1042
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
BmcAI	AGTACT	2 cut(s)	108, 1192
Bme1390I	CCNGG	6 cut(s)	231, 370, 528, 859, 860, 1089
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	858
BmgT120I	GGNCC	3 cut(s)	153, 763, 764
BmiI	GGNNCC	1 cut(s)	765
BmrFI	CCNGG	6 cut(s)	231, 370, 528, 859, 860, 1089
BmsI	GCATC	3 cut(s)	43, 224, 1063
BpiI	GAAGAC	1 cut(s)	612
BpmI	CTGGAG	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	3 cut(s)	50, 533, 1157
BpuMI	CCSGG	2 cut(s)	859, 860
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	7 cut(s)	229, 238, 368, 810, 857, 858, 859
BsaWI	WCCGGW	1 cut(s)	887
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 1068
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	4 cut(s)	231, 370, 528, 1089
BseDI	CCNNGG	7 cut(s)	229, 238, 368, 810, 857, 858, 859
BseGI	GGATG	5 cut(s)	239, 248, 693, 713, 1078
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	2 cut(s)	244, 1068
BseMII	CTCAG	4 cut(s)	372, 571, 813, 1270
BseRI	GAGGAG	1 cut(s)	1226
BseSI	GKGCMC	1 cut(s)	767
BseXI	GCAGC	1 cut(s)	409
BseYI	CCCAGC	1 cut(s)	766
Bsh1236I	CGCG	2 cut(s)	273, 288
BshFI	GGCC	1 cut(s)	765
BsiHKCI	CYCGRG	1 cut(s)	858
BsiSI	CCGG	3 cut(s)	98, 859, 888
BslFI	GGGAC	2 cut(s)	538, 840
BslI	CCNNNNNNNGG	2 cut(s)	244, 1068
BsmAI	GTCTC	3 cut(s)	465, 551, 1197
BsmFI	GGGAC	2 cut(s)	538, 840
BsnI	GGCC	1 cut(s)	765
BsoBI	CYCGRG	1 cut(s)	858
Bsp119I	TTCGAA	1 cut(s)	44
Bsp120I	GGGCCC	1 cut(s)	763
Bsp1286I	GDGCHC	1 cut(s)	767
Bsp1407I	TGTACA	1 cut(s)	1282
Bsp143I	GATC	5 cut(s)	268, 364, 427, 829, 922
BspACI	CCGC	2 cut(s)	151, 1223
BspANI	GGCC	1 cut(s)	765
BspCNI	CTCAG	4 cut(s)	373, 570, 814, 1269
BspFNI	CGCG	2 cut(s)	273, 288
BspLI	GGNNCC	1 cut(s)	765
BspPI	GGATC	1 cut(s)	359
BspT104I	TTCGAA	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	1282
BssECI	CCNNGG	7 cut(s)	229, 238, 368, 810, 857, 858, 859
BssMI	GATC	5 cut(s)	268, 364, 427, 829, 922
BssT1I	CCWWGG	1 cut(s)	810
Bst2UI	CCWGG	4 cut(s)	231, 370, 528, 1089
Bst4CI	ACNGT	3 cut(s)	160, 1147, 1247
Bst6I	CTCTTC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	1282
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	275
BstDEI	CTNAG	9 cut(s)	205, 220, 381, 557, 822, 983, 1013, 1256, 1305
BstF5I	GGATG	5 cut(s)	239, 248, 693, 713, 1078
BstFNI	CGCG	2 cut(s)	273, 288
BstHHI	GCGC	1 cut(s)	1126
BstKTI	GATC	5 cut(s)	271, 367, 430, 832, 925
BstMAI	GTCTC	3 cut(s)	465, 551, 1197
BstMBI	GATC	5 cut(s)	268, 364, 427, 829, 922
BstMWI	GCNNNNNNNGC	1 cut(s)	970
BstNI	CCWGG	4 cut(s)	231, 370, 528, 1089
BstSCI	CCNGG	6 cut(s)	229, 368, 526, 857, 858, 1087
BstSLI	GKGCMC	1 cut(s)	767
BstUI	CGCG	2 cut(s)	273, 288
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	1 cut(s)	612
BsuI	GTATCC	1 cut(s)	1042
BsuRI	GGCC	1 cut(s)	765
BtsCI	GGATG	5 cut(s)	239, 248, 693, 713, 1078
BtsIMutI	CAGTG	2 cut(s)	378, 565
Cac8I	GCNNGC	1 cut(s)	275
CfoI	GCGC	1 cut(s)	1126
Cfr13I	GGNCC	3 cut(s)	153, 763, 764
Cfr9I	CCCGGG	1 cut(s)	858
Csp6I	GTAC	5 cut(s)	107, 284, 404, 1191, 1283
CviAII	CATG	3 cut(s)	610, 1185, 1198
CviJI	RGCY	9 cut(s)	204, 490, 765, 770, 821, 973, 990, 1277, 1304
CviKI_1	RGCY	9 cut(s)	204, 490, 765, 770, 821, 973, 990, 1277, 1304
CviQI	GTAC	5 cut(s)	107, 284, 404, 1191, 1283
DdeI	CTNAG	9 cut(s)	205, 220, 381, 557, 822, 983, 1013, 1256, 1305
DpnI	GATC	5 cut(s)	270, 366, 429, 831, 924
DpnII	GATC	5 cut(s)	268, 364, 427, 829, 922
DraI	TTTAAA	1 cut(s)	631
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco130I	CCWWGG	1 cut(s)	810
Eco24I	GRGCYC	1 cut(s)	767
Eco32I	GATATC	1 cut(s)	1094
Eco47I	GGWCC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	989
Eco88I	CYCGRG	1 cut(s)	858
EcoO109I	RGGNCCY	1 cut(s)	763
EcoRII	CCWGG	4 cut(s)	229, 368, 526, 1087
EcoRV	GATATC	1 cut(s)	1094
EcoT14I	CCWWGG	1 cut(s)	810
EcoT38I	GRGCYC	1 cut(s)	767
ErhI	CCWWGG	1 cut(s)	810
FaeI	CATG	3 cut(s)	613, 1188, 1201
FaqI	GGGAC	2 cut(s)	538, 840
FatI	CATG	3 cut(s)	609, 1184, 1197
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	5 cut(s)	246, 255, 680, 700, 1085
FriOI	GRGCYC	1 cut(s)	767
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	6 cut(s)	497, 540, 657, 1031, 1053, 1372
GlaI	GCGC	1 cut(s)	1125
GluI	GCNGC	1 cut(s)	423
GsaI	CCCAGC	1 cut(s)	770
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	1 cut(s)	765
HapII	CCGG	3 cut(s)	98, 859, 888
HhaI	GCGC	1 cut(s)	1126
Hin1II	CATG	3 cut(s)	613, 1188, 1201
Hin6I	GCGC	1 cut(s)	1124
HinP1I	GCGC	1 cut(s)	1124
HincII	GTYRAC	2 cut(s)	681, 1002
HindII	GTYRAC	2 cut(s)	681, 1002
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	5 cut(s)	41, 101, 290, 468, 853
HpaI	GTTAAC	1 cut(s)	1002
HpaII	CCGG	3 cut(s)	98, 859, 888
HphI	GGTGA	4 cut(s)	1014, 1049, 1237, 1259
Hpy166II	GTNNAC	3 cut(s)	168, 681, 1002
Hpy188I	TCNGA	4 cut(s)	52, 201, 441, 698
Hpy188III	TCNNGA	7 cut(s)	38, 497, 657, 743, 1031, 1046, 1174
Hpy8I	GTNNAC	3 cut(s)	168, 681, 1002
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	3 cut(s)	160, 1147, 1247
HpyCH4V	TGCA	4 cut(s)	251, 842, 1076, 1317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	970
HpyF3I	CTNAG	9 cut(s)	205, 220, 381, 557, 822, 983, 1013, 1256, 1305
Hsp92II	CATG	3 cut(s)	613, 1188, 1201
HspAI	GCGC	1 cut(s)	1124
KspAI	GTTAAC	1 cut(s)	1002
Kzo9I	GATC	5 cut(s)	268, 364, 427, 829, 922
LmnI	GCTCC	1 cut(s)	739
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	3 cut(s)	43, 224, 1063
MaeI	CTAG	6 cut(s)	497, 540, 657, 1031, 1053, 1372
MaeIII	GTNAC	5 cut(s)	113, 560, 903, 1055, 1288
MalI	GATC	5 cut(s)	270, 366, 429, 831, 924
MboI	GATC	5 cut(s)	268, 364, 427, 829, 922
MboII	GAAGA	9 cut(s)	19, 22, 27, 86, 89, 428, 614, 617, 798
MhlI	GDGCHC	1 cut(s)	767
MluCI	AATT	9 cut(s)	18, 92, 443, 455, 500, 955, 1153, 1262, 1323
MlyI	GAGTC	2 cut(s)	284, 862
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	8 cut(s)	58, 233, 249, 566, 1062, 1181, 1204, 1291
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	6 cut(s)	579, 630, 1001, 1098, 1239, 1328
MspI	CCGG	3 cut(s)	98, 859, 888
MspR9I	CCNGG	6 cut(s)	231, 370, 528, 859, 860, 1089
MvaI	CCWGG	4 cut(s)	231, 370, 528, 1089
MvnI	CGCG	2 cut(s)	273, 288
MwoI	GCNNNNNNNGC	1 cut(s)	970
NciI	CCSGG	2 cut(s)	859, 860
NdeII	GATC	5 cut(s)	268, 364, 427, 829, 922
NlaIII	CATG	3 cut(s)	613, 1188, 1201
NlaIV	GGNNCC	1 cut(s)	765
NmeAIII	GCCGAG	1 cut(s)	263
NmuCI	GTSAC	5 cut(s)	113, 560, 903, 1055, 1288
NspV	TTCGAA	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	41, 101, 468
PflFI	GACNNNGTC	1 cut(s)	676
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	2 cut(s)	284, 861
PpsI	GAGTC	2 cut(s)	284, 861
Psp6I	CCWGG	4 cut(s)	229, 368, 526, 1087
PspFI	CCCAGC	1 cut(s)	766
PspGI	CCWGG	4 cut(s)	229, 368, 526, 1087
PspN4I	GGNNCC	1 cut(s)	765
PspOMI	GGGCCC	1 cut(s)	763
PspPI	GGNCC	3 cut(s)	153, 763, 764
PsyI	GACNNNGTC	1 cut(s)	676
RsaI	GTAC	5 cut(s)	108, 285, 405, 1192, 1284
RsaNI	GTAC	5 cut(s)	107, 284, 404, 1191, 1283
SaqAI	TTAA	6 cut(s)	579, 630, 1001, 1098, 1239, 1328
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	5 cut(s)	268, 364, 427, 829, 922
Sau96I	GGNCC	3 cut(s)	153, 763, 764
ScaI	AGTACT	2 cut(s)	108, 1192
SchI	GAGTC	2 cut(s)	284, 862
ScrFI	CCNGG	6 cut(s)	231, 370, 528, 859, 860, 1089
SduI	GDGCHC	1 cut(s)	767
SfaNI	GCATC	3 cut(s)	43, 224, 1063
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	1 cut(s)	153
SmaI	CCCGGG	1 cut(s)	860
SmlI	CTYRAG	3 cut(s)	29, 548, 1172
SmoI	CTYRAG	3 cut(s)	29, 548, 1172
SpeI	ACTAGT	1 cut(s)	1052
Sse9I	AATT	9 cut(s)	18, 92, 443, 455, 500, 955, 1153, 1262, 1323
SsiI	CCGC	2 cut(s)	151, 1223
SspI	AATATT	1 cut(s)	1232
SspMI	CTAG	6 cut(s)	497, 540, 657, 1031, 1053, 1372
StyD4I	CCNGG	6 cut(s)	229, 368, 526, 857, 858, 1087
StyI	CCWWGG	1 cut(s)	810
TaaI	ACNGT	3 cut(s)	160, 1147, 1247
TaqI	TCGA	4 cut(s)	44, 63, 642, 744
TasI	AATT	9 cut(s)	18, 92, 443, 455, 500, 955, 1153, 1262, 1323
TatI	WGTACW	4 cut(s)	106, 403, 1190, 1282
TfiI	GAWTC	3 cut(s)	41, 101, 468
Tru1I	TTAA	6 cut(s)	579, 630, 1001, 1098, 1239, 1328
Tru9I	TTAA	6 cut(s)	579, 630, 1001, 1098, 1239, 1328
TscAI	CASTG	2 cut(s)	385, 565
TseFI	GTSAC	5 cut(s)	113, 560, 903, 1055, 1288
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	5 cut(s)	113, 560, 903, 1055, 1288
TspDTI	ATGAA	5 cut(s)	302, 679, 968, 1186, 1325
TspGWI	ACGGA	2 cut(s)	344, 1019
TspMI	CCCGGG	1 cut(s)	858
TspRI	CASTG	2 cut(s)	385, 565
Tth111I	GACNNNGTC	1 cut(s)	676
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	3 cut(s)	955, 1262, 1323
XbaI	TCTAGA	3 cut(s)	496, 656, 1030
XmaI	CCCGGG	1 cut(s)	858
XmiI	GTMKAC	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	6 cut(s)	497, 540, 657, 1031, 1053, 1372
ZrmI	AGTACT	2 cut(s)	108, 1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.