Rh6CG501100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017012
Physical Location & Seq
Reverse (-)
66457980 .. 66459363
1384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG501100.1

Sequence Viewer

Length: 1137 bp
ATGGAACAACTTATGGATTTCTGTTCCGAGCTTAGATTTCAACCAGACGGATTTCCCTGGACGCCGAGGATGGCTTGCATTGAGGACATTTGTAGATCGCGTGCTTTCAAGAAAGATTTCCGTCTTTTTGATCCCTGGACATTCACCGAGAACAGGAATGATGTTTTTGAACTTGACTTTTGTATTGTTGCCGATCATCGTCTTCGGAAATTAGAGTTGAAATTGTCTCAAAGAATCTTTATTTACAATACAAAGCTTGTTCTAGACTTGGTTTCAAAATGTAGTATTACTCCAGGTTGTTTCCCTAGTAGTCTCAAGTCCCTCAGTGACTTGATGGGATTTCTTAATCTCAACTTTCCAGCAGTTGAAGAAGACATGGTTATAGATGGCAGTTTTAAACAACCTTTCGATTACTACATCCCTAGAAAAGAACTAAAGACATTGTCAACAAGTTTCATCATCCGAGATAATGAAGAACCATCCACCATTTATCTCAATGCTCCAAATCTCGAAAATCTTGTCATTCAGGGCCCGGCTAAAGATTTGCCTAACTATGTTTTGGAGAATGTATCTTCCTTGGTAAAAGCTGAGATTAATCTCCCTTTTGCAGATTGTTTGAGTCCCCGGGGAAGTTTGTTGCTGAGTAGAATATCCGGTGTTGAATATCTGTCTCTTTCAGTTCCTTGTGATCTTGTGGCAAGGTCTATTCCTGTTTTTGAAAATTTGAAGCAACTGAAGCTATTTCATCTTAGTAGCCTTGTCTGGTTAACGGAGTTTCTAAGGAGATCACCTAATCTAGAGTATCTTGTTGTGGATACTAGTCACCCCAAATGGAGGGATGCAGAGTATATACCAGGATATCTTAATGAGAGATATGTTCAAGGATTTGCGCCGTTCAATCCACCACAAACTGTGCCTAATTGCTTGTTGTCGCACCTCAAGACTATCTCATGGAGTACTTTCATGGGAGACAAGGAGGAGTGGGAAGCGGTGAAATATTTGTTTAAGCACGGTGAAGTTCTCAGTAAATTTACCATTTCAGCTTATGTACAGGTCACACAAGAGGAAGCTAAGGAGTTGTGCAAAGAAATTTTAACATTTCATAAGTGTTCAAAATTCAAAGACTTGTGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

378

Amino Acids

43.69

Weight (kDa)

5.68

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 302 - 346 1.9e-13 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 100
AciI CCGC 1 cut(s) 989
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 4 cut(s) 721, 1028, 1089, 1115
AcuI CTGAAG 1 cut(s) 755
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 2 cut(s) 958, 1050
AfiI CCNNNNNNNGG 2 cut(s) 153, 834
AhlI ACTAGT 1 cut(s) 818
AjnI CCWGG 4 cut(s) 56, 134, 292, 853
AluBI AGCT 6 cut(s) 31, 256, 587, 739, 1043, 1070
AluI AGCT 6 cut(s) 31, 256, 587, 739, 1043, 1070
Alw26I GTCTC 4 cut(s) 231, 317, 675, 963
AlwI GGATC 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 624
AoxI GGCC 1 cut(s) 529
ApaI GGGCCC 1 cut(s) 533
ApoI RAATTY 4 cut(s) 721, 1028, 1089, 1115
ArsI GACNNNNNNTTYG 2 cut(s) 504, 536
AseI ATTAAT 1 cut(s) 594
Asp700I GAANNNNTTC 1 cut(s) 116
AspLEI GCGC 1 cut(s) 892
AspS9I GGNCC 2 cut(s) 529, 530
AsuC2I CCSGG 3 cut(s) 533, 625, 626
AsuHPI GGTGA 5 cut(s) 136, 780, 815, 1003, 1025
AvaI CYCGRG 1 cut(s) 624
BaeGI GKGCMC 1 cut(s) 533
BanII GRGCYC 1 cut(s) 533
BbsI GAAGAC 2 cut(s) 194, 378
BccI CCATC 4 cut(s) 64, 328, 380, 487
BceAI ACGGC 1 cut(s) 877
BciT130I CCWGG 4 cut(s) 58, 136, 294, 855
BciVI GTATCC 1 cut(s) 808
BcnI CCSGG 3 cut(s) 533, 625, 626
BcoDI GTCTC 4 cut(s) 231, 317, 675, 963
BcuI ACTAGT 1 cut(s) 818
BfaI CTAG 5 cut(s) 263, 306, 423, 797, 819
BfuI GTATCC 1 cut(s) 808
BmcAI AGTACT 1 cut(s) 958
Bme1390I CCNGG 7 cut(s) 58, 136, 294, 533, 625, 626, 855
BmeT110I CYCGRG 1 cut(s) 624
BmgT120I GGNCC 2 cut(s) 529, 530
BmiI GGNNCC 1 cut(s) 531
BmrFI CCNGG 7 cut(s) 58, 136, 294, 533, 625, 626, 855
BmsI GCATC 1 cut(s) 829
BpiI GAAGAC 2 cut(s) 194, 378
BpmI CTGGAG 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 1071
BpuEI CTTGAG 2 cut(s) 299, 923
BpuMI CCSGG 3 cut(s) 533, 625, 626
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 7 cut(s) 56, 65, 134, 576, 623, 624, 625
BsaWI WCCGGW 1 cut(s) 653
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 834
BseBI CCWGG 4 cut(s) 58, 136, 294, 855
BseDI CCNNGG 7 cut(s) 56, 65, 134, 576, 623, 624, 625
BseGI GGATG 5 cut(s) 75, 417, 459, 479, 844
BseLI CCNNNNNNNGG 2 cut(s) 153, 834
BseMII CTCAG 4 cut(s) 337, 579, 632, 1036
BseRI GAGGAG 1 cut(s) 992
BseSI GKGCMC 1 cut(s) 533
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 531
BsiHKCI CYCGRG 1 cut(s) 624
BsiSI CCGG 3 cut(s) 533, 625, 654
BslFI GGGAC 2 cut(s) 304, 606
BslI CCNNNNNNNGG 2 cut(s) 153, 834
BsmAI GTCTC 4 cut(s) 231, 317, 675, 963
BsmFI GGGAC 2 cut(s) 304, 606
BsnI GGCC 1 cut(s) 531
BsoBI CYCGRG 1 cut(s) 624
Bsp120I GGGCCC 1 cut(s) 529
Bsp1286I GDGCHC 1 cut(s) 533
Bsp1407I TGTACA 1 cut(s) 1048
Bsp143I GATC 5 cut(s) 95, 130, 193, 688, 785
BspACI CCGC 1 cut(s) 989
BspANI GGCC 1 cut(s) 531
BspCNI CTCAG 4 cut(s) 336, 580, 633, 1035
BspFNI CGCG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 531
BspPI GGATC 1 cut(s) 125
BsrGI TGTACA 1 cut(s) 1048
BssECI CCNNGG 7 cut(s) 56, 65, 134, 576, 623, 624, 625
BssMI GATC 5 cut(s) 95, 130, 193, 688, 785
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 576
Bst2UI CCWGG 4 cut(s) 58, 136, 294, 855
Bst4CI ACNGT 2 cut(s) 913, 1013
BstACI GRCGYC 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 1048
BstC8I GCNNGC 2 cut(s) 76, 102
BstDEI CTNAG 8 cut(s) 32, 323, 588, 641, 749, 779, 1022, 1071
BstF5I GGATG 5 cut(s) 75, 417, 459, 479, 844
BstFNI CGCG 1 cut(s) 100
BstHHI GCGC 1 cut(s) 892
BstKTI GATC 5 cut(s) 98, 133, 196, 691, 788
BstMAI GTCTC 4 cut(s) 231, 317, 675, 963
BstMBI GATC 5 cut(s) 95, 130, 193, 688, 785
BstMWI GCNNNNNNNGC 1 cut(s) 736
BstNI CCWGG 4 cut(s) 58, 136, 294, 855
BstSCI CCNGG 7 cut(s) 56, 134, 292, 531, 623, 624, 853
BstSLI GKGCMC 1 cut(s) 533
BstUI CGCG 1 cut(s) 100
BstV2I GAAGAC 2 cut(s) 194, 378
BsuI GTATCC 1 cut(s) 808
BsuRI GGCC 1 cut(s) 531
BtsCI GGATG 5 cut(s) 75, 417, 459, 479, 844
BtsIMutI CAGTG 1 cut(s) 331
Cac8I GCNNGC 2 cut(s) 76, 102
CfoI GCGC 1 cut(s) 892
Cfr13I GGNCC 2 cut(s) 529, 530
Cfr9I CCCGGG 1 cut(s) 624
CseI GACGC 1 cut(s) 70
Csp6I GTAC 2 cut(s) 957, 1049
CviAII CATG 3 cut(s) 376, 951, 964
CviQI GTAC 2 cut(s) 957, 1049
DdeI CTNAG 8 cut(s) 32, 323, 588, 641, 749, 779, 1022, 1071
DpnI GATC 5 cut(s) 97, 132, 195, 690, 787
DpnII GATC 5 cut(s) 95, 130, 193, 688, 785
DraI TTTAAA 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 576
Eco24I GRGCYC 1 cut(s) 533
Eco32I GATATC 1 cut(s) 860
Eco57I CTGAAG 1 cut(s) 755
Eco88I CYCGRG 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 529
EcoRII CCWGG 4 cut(s) 56, 134, 292, 853
EcoRV GATATC 1 cut(s) 860
EcoT14I CCWWGG 1 cut(s) 576
EcoT38I GRGCYC 1 cut(s) 533
ErhI CCWWGG 1 cut(s) 576
FaeI CATG 3 cut(s) 379, 954, 967
FaqI GGGAC 2 cut(s) 304, 606
FatI CATG 3 cut(s) 375, 950, 963
FokI GGATG 5 cut(s) 82, 404, 446, 466, 851
FriOI GRGCYC 1 cut(s) 533
FspBI CTAG 5 cut(s) 263, 306, 423, 797, 819
GlaI GCGC 1 cut(s) 891
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 531
HapII CCGG 3 cut(s) 533, 625, 654
HgaI GACGC 1 cut(s) 70
HhaI GCGC 1 cut(s) 892
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 3 cut(s) 379, 954, 967
Hin6I GCGC 1 cut(s) 890
HinP1I GCGC 1 cut(s) 890
HincII GTYRAC 2 cut(s) 447, 768
HindII GTYRAC 2 cut(s) 447, 768
HindIII AAGCTT 1 cut(s) 254
HinfI GANTC 2 cut(s) 234, 619
HpaI GTTAAC 1 cut(s) 768
HpaII CCGG 3 cut(s) 533, 625, 654
HphI GGTGA 5 cut(s) 136, 780, 815, 1003, 1025
Hpy166II GTNNAC 2 cut(s) 447, 768
Hpy188I TCNGA 3 cut(s) 28, 207, 464
Hpy188III TCNNGA 5 cut(s) 109, 263, 509, 797, 940
Hpy8I GTNNAC 2 cut(s) 447, 768
HpyCH4III ACNGT 2 cut(s) 913, 1013
HpyCH4V TGCA 4 cut(s) 78, 608, 842, 1083
HpyF10VI GCNNNNNNNGC 1 cut(s) 736
HpyF3I CTNAG 8 cut(s) 32, 323, 588, 641, 749, 779, 1022, 1071
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 3 cut(s) 379, 954, 967
HspAI GCGC 1 cut(s) 890
KspAI GTTAAC 1 cut(s) 768
Kzo9I GATC 5 cut(s) 95, 130, 193, 688, 785
LmnI GCTCC 1 cut(s) 505
LweI GCATC 1 cut(s) 829
MaeI CTAG 5 cut(s) 263, 306, 423, 797, 819
MaeIII GTNAC 3 cut(s) 326, 821, 1054
MalI GATC 5 cut(s) 97, 132, 195, 690, 787
MboI GATC 5 cut(s) 95, 130, 193, 688, 785
MboII GAAGA 5 cut(s) 194, 380, 383, 485, 564
MhlI GDGCHC 1 cut(s) 533
MluCI AATT 7 cut(s) 209, 221, 721, 919, 1028, 1089, 1115
MlyI GAGTC 1 cut(s) 628
MnlI CCTC 7 cut(s) 60, 76, 332, 828, 947, 970, 1057
MroXI GAANNNNTTC 1 cut(s) 116
MseI TTAA 7 cut(s) 345, 396, 594, 767, 864, 1005, 1094
MspI CCGG 3 cut(s) 533, 625, 654
MspR9I CCNGG 7 cut(s) 58, 136, 294, 533, 625, 626, 855
MvaI CCWGG 4 cut(s) 58, 136, 294, 855
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 1 cut(s) 736
NciI CCSGG 3 cut(s) 533, 625, 626
NdeII GATC 5 cut(s) 95, 130, 193, 688, 785
NlaIII CATG 3 cut(s) 379, 954, 967
NlaIV GGNNCC 1 cut(s) 531
NmeAIII GCCGAG 1 cut(s) 90
NmuCI GTSAC 3 cut(s) 326, 821, 1054
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 1 cut(s) 234
PflFI GACNNNGTC 1 cut(s) 442
PleI GAGTC 1 cut(s) 627
PpsI GAGTC 1 cut(s) 627
PshBI ATTAAT 1 cut(s) 594
Psp6I CCWGG 4 cut(s) 56, 134, 292, 853
PspGI CCWGG 4 cut(s) 56, 134, 292, 853
PspN4I GGNNCC 1 cut(s) 531
PspOMI GGGCCC 1 cut(s) 529
PspPI GGNCC 2 cut(s) 529, 530
PsyI GACNNNGTC 1 cut(s) 442
RsaI GTAC 2 cut(s) 958, 1050
RsaNI GTAC 2 cut(s) 957, 1049
SaqAI TTAA 7 cut(s) 345, 396, 594, 767, 864, 1005, 1094
Sau3AI GATC 5 cut(s) 95, 130, 193, 688, 785
Sau96I GGNCC 2 cut(s) 529, 530
ScaI AGTACT 1 cut(s) 958
SchI GAGTC 1 cut(s) 628
ScrFI CCNGG 7 cut(s) 58, 136, 294, 533, 625, 626, 855
SduI GDGCHC 1 cut(s) 533
SfaNI GCATC 1 cut(s) 829
SmaI CCCGGG 1 cut(s) 626
SmlI CTYRAG 2 cut(s) 314, 938
SmoI CTYRAG 2 cut(s) 314, 938
SpeI ACTAGT 1 cut(s) 818
Sse9I AATT 7 cut(s) 209, 221, 721, 919, 1028, 1089, 1115
SsiI CCGC 1 cut(s) 989
SspI AATATT 1 cut(s) 998
SspMI CTAG 5 cut(s) 263, 306, 423, 797, 819
StyD4I CCNGG 7 cut(s) 56, 134, 292, 531, 623, 624, 853
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 2 cut(s) 913, 1013
TaqI TCGA 2 cut(s) 408, 510
TasI AATT 7 cut(s) 209, 221, 721, 919, 1028, 1089, 1115
TatI WGTACW 2 cut(s) 956, 1048
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 7 cut(s) 345, 396, 594, 767, 864, 1005, 1094
Tru9I TTAA 7 cut(s) 345, 396, 594, 767, 864, 1005, 1094
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 3 cut(s) 326, 821, 1054
Tsp45I GTSAC 3 cut(s) 326, 821, 1054
TspDTI ATGAA 5 cut(s) 445, 486, 734, 952, 1091
TspGWI ACGGA 3 cut(s) 63, 110, 785
TspMI CCCGGG 1 cut(s) 624
TspRI CASTG 1 cut(s) 331
Tth111I GACNNNGTC 1 cut(s) 442
VspI ATTAAT 1 cut(s) 594
XapI RAATTY 4 cut(s) 721, 1028, 1089, 1115
XbaI TCTAGA 2 cut(s) 262, 796
XmaI CCCGGG 1 cut(s) 624
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 5 cut(s) 263, 306, 423, 797, 819
ZrmI AGTACT 1 cut(s) 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.