Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0017012

Physical Location & Seq

Genomic Coordinates Reverse (-)

65873221 .. 65874685

Gene Structure 1465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G042400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGAGAAGAAGAGAAGAATTATCAAACTTGACCATCAGGATTCGAAATCGGAACATCAAGTCGAGGGATTTAAAGAAGATAGGATAAGTGAATTGCCGGATTCAGTACTTTGTCACATATTTTCGTTCCTTCCGACTTTATATGTGGTGCGGACCACCGTTTTGTCTACGAGATGGAACAACTTATGGATTTCTGTTCCGAGCTTAGATTTCAACCAGACGGATTTCCCTGGACGCCGAGGATGGCTTGCATTGAGGACATTTGTAGATCGCGTGCTTTCAGTACGCGACTCATCACACATTGACAGGTTCCATCTTTTTTGTTGTTCTTTTGGATTTGAAGAGAAAGATTTCCATCTTTTTTATCCCTGGACATTCACTGAGAACAGGAATGATGGTTTTGAACTTGACTTTTGTATTGTTGCCGATCATCGTCTTCGGAAATTAGAGTTGAGATTGTCTCAAAGAATCTTTATTTACAATACAAAGCTTGTTCTAGACTTGGTTTCAAAATGTAGCATTACTCCAGGTTGTTTCCCTAGTAGTCTCAAGTCCCTCAGTGACTTGATGGGATTTCTTAATCTCAACTTTCCAGCAGTTGAAGAAGACATGGTTATAGAAGGCAGTTTTAAACAACCTTTCGATTGCTACATCTCTAGAAAAGAACTAAAGACATTGTTAACTAGTTTCATCATCCTAGATAATGAAGAACCATCCACCATTTATCTCAATGCTCCAAATCTCGAAAATCTTGTCATTCAGGGCCCGGCTAAAGATTTGCCTAACTATGTTTTGGAGAATGTATCTTCCTTGGTAAAAGCTGAGATTGATCTCCCTTTTGCAGATTGTTTGAGTCCCCGGGGAAGTTTGTTGCTGAGTAGAATATCCGGTGTTGAATATCTGTCTATTCCTGTTTTTGAAAATTTGAAGCAACTGAAGCTATTTCATCTTAGTAGCCTTGTCTGGTTAACGGAGTTTCTAAGGAAATCACCTAATCTAGAGTATCTTGTTCTGGATACTAGATATCTTAATGAGAGATATGTTCAAGGATATGCGCTGTTCAATCCACCACAAACTGTGCCTAATTGCTTGTTGTCGCACCTCAAGACTATCTTATGGAGTGCTTTCATGGGAGACAAGGAGGAGTGGGAAGCGGTGAAATATTTGTTTAAGCACGGTGAAGTTCTCAGTAAATTTACTATTTCAGCTTATGTACAGGTCACAAAAGAGGAAGCTAAGAAGTTGTGCAAAGAAATTTTAACATTTCATAAGTGTTCAAAGACTTGTGTGGTTGAAGTTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

434

Amino Acids

50.37

Weight (kDa)

6.29

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	29 - 68	7.4e-08	F-box domain
FBD	PF08387	357 - 401	8.1e-13	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017012)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0309621
rosa_laevigata	RLG00000010549
rosa_multiflora	Rmu_co8441039.1_g000001 Rmu_sc0007632.1_g000004 Rmu_sc0008462.1_g000002 Rmu_sc0011978.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159280
rosa_rugosa	Rorug04G0147900 Rorug06G0373200
rosa_samantha	Rh6AG486800 Rh6BG496400 Rh6CG501100 Rh6DG487300
rosa_wichuraiana	Rw6G042400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	167
AccII	CGCG	2 cut(s)	273, 288
AciI	CCGC	2 cut(s)	151, 1154
AcsI	RAATTY	3 cut(s)	922, 1193, 1254
AcuI	CTGAAG	1 cut(s)	956
AcyI	GRCGYC	1 cut(s)	235
AfaI	GTAC	3 cut(s)	108, 285, 1215
AhlI	ACTAGT	1 cut(s)	683
AjnI	CCWGG	3 cut(s)	229, 368, 526
AluBI	AGCT	6 cut(s)	204, 490, 821, 940, 1208, 1235
AluI	AGCT	6 cut(s)	204, 490, 821, 940, 1208, 1235
Alw26I	GTCTC	3 cut(s)	465, 551, 1128
Ama87I	CYCGRG	1 cut(s)	858
AoxI	GGCC	1 cut(s)	763
ApaI	GGGCCC	1 cut(s)	767
ApoI	RAATTY	3 cut(s)	922, 1193, 1254
ArsI	GACNNNNNNTTYG	4 cut(s)	145, 177, 738, 770
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	1057
AspS9I	GGNCC	3 cut(s)	153, 763, 764
AsuC2I	CCSGG	3 cut(s)	767, 859, 860
AsuHPI	GGTGA	3 cut(s)	981, 1168, 1190
AsuII	TTCGAA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	858
AvaII	GGWCC	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	767
BanII	GRGCYC	1 cut(s)	767
BbsI	GAAGAC	2 cut(s)	428, 612
BccI	CCATC	8 cut(s)	42, 168, 237, 321, 363, 389, 562, 721
BciT130I	CCWGG	3 cut(s)	231, 370, 528
BciVI	GTATCC	1 cut(s)	1009
BcnI	CCSGG	3 cut(s)	767, 859, 860
BcoDI	GTCTC	3 cut(s)	465, 551, 1128
BcuI	ACTAGT	1 cut(s)	683
BfaI	CTAG	8 cut(s)	497, 540, 657, 684, 698, 998, 1020, 1303
BfuI	GTATCC	1 cut(s)	1009
BmcAI	AGTACT	1 cut(s)	108
Bme1390I	CCNGG	6 cut(s)	231, 370, 528, 767, 859, 860
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	858
BmgT120I	GGNCC	3 cut(s)	153, 763, 764
BmiI	GGNNCC	2 cut(s)	311, 765
BmrFI	CCNGG	6 cut(s)	231, 370, 528, 767, 859, 860
BpiI	GAAGAC	2 cut(s)	428, 612
BplI	GAGNNNNNCTC	2 cut(s)	445, 477
BpmI	CTGGAG	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	2 cut(s)	533, 1088
BpuMI	CCSGG	3 cut(s)	767, 859, 860
BsaBI	GATNNNNATC	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	235
BsaJI	CCNNGG	7 cut(s)	229, 238, 368, 810, 857, 858, 859
BsaWI	WCCGGW	1 cut(s)	887
Bse8I	GATNNNNATC	1 cut(s)	354
BseBI	CCWGG	3 cut(s)	231, 370, 528
BseDI	CCNNGG	7 cut(s)	229, 238, 368, 810, 857, 858, 859
BseGI	GGATG	3 cut(s)	248, 693, 713
BseJI	GATNNNNATC	1 cut(s)	354
BseMII	CTCAG	5 cut(s)	372, 571, 813, 866, 1201
BseRI	GAGGAG	1 cut(s)	1157
BseSI	GKGCMC	1 cut(s)	767
Bsh1236I	CGCG	2 cut(s)	273, 288
BshFI	GGCC	1 cut(s)	765
BsiHKCI	CYCGRG	1 cut(s)	858
BsiSI	CCGG	4 cut(s)	98, 767, 859, 888
BslFI	GGGAC	2 cut(s)	538, 840
BsmAI	GTCTC	3 cut(s)	465, 551, 1128
BsmFI	GGGAC	2 cut(s)	538, 840
BsnI	GGCC	1 cut(s)	765
BsoBI	CYCGRG	1 cut(s)	858
Bsp119I	TTCGAA	1 cut(s)	44
Bsp120I	GGGCCC	1 cut(s)	763
Bsp1286I	GDGCHC	1 cut(s)	767
Bsp1407I	TGTACA	1 cut(s)	1213
Bsp143I	GATC	3 cut(s)	268, 427, 829
BspACI	CCGC	2 cut(s)	151, 1154
BspANI	GGCC	1 cut(s)	765
BspCNI	CTCAG	5 cut(s)	373, 570, 814, 867, 1200
BspFNI	CGCG	2 cut(s)	273, 288
BspLI	GGNNCC	2 cut(s)	311, 765
BspT104I	TTCGAA	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	1213
BssECI	CCNNGG	7 cut(s)	229, 238, 368, 810, 857, 858, 859
BssMI	GATC	3 cut(s)	268, 427, 829
BssNI	GRCGYC	1 cut(s)	235
BssT1I	CCWWGG	1 cut(s)	810
Bst2UI	CCWGG	3 cut(s)	231, 370, 528
Bst4CI	ACNGT	3 cut(s)	160, 1078, 1178
Bst6I	CTCTTC	2 cut(s)	5, 336
BstACI	GRCGYC	1 cut(s)	235
BstAUI	TGTACA	1 cut(s)	1213
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	249, 275
BstDEI	CTNAG	9 cut(s)	205, 381, 557, 822, 875, 950, 980, 1187, 1236
BstF5I	GGATG	3 cut(s)	248, 693, 713
BstFNI	CGCG	2 cut(s)	273, 288
BstHHI	GCGC	1 cut(s)	1057
BstKTI	GATC	3 cut(s)	271, 430, 832
BstMAI	GTCTC	3 cut(s)	465, 551, 1128
BstMBI	GATC	3 cut(s)	268, 427, 829
BstMWI	GCNNNNNNNGC	1 cut(s)	937
BstNI	CCWGG	3 cut(s)	231, 370, 528
BstSCI	CCNGG	6 cut(s)	229, 368, 526, 765, 857, 858
BstSLI	GKGCMC	1 cut(s)	767
BstUI	CGCG	2 cut(s)	273, 288
BstV2I	GAAGAC	2 cut(s)	428, 612
BsuI	GTATCC	1 cut(s)	1009
BsuRI	GGCC	1 cut(s)	765
BtsCI	GGATG	3 cut(s)	248, 693, 713
BtsIMutI	CAGTG	2 cut(s)	378, 565
Cac8I	GCNNGC	2 cut(s)	249, 275
CfoI	GCGC	1 cut(s)	1057
Cfr13I	GGNCC	3 cut(s)	153, 763, 764
Cfr9I	CCCGGG	1 cut(s)	858
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	3 cut(s)	107, 284, 1214
CviAII	CATG	2 cut(s)	610, 1129
CviQI	GTAC	3 cut(s)	107, 284, 1214
DdeI	CTNAG	9 cut(s)	205, 381, 557, 822, 875, 950, 980, 1187, 1236
DpnI	GATC	3 cut(s)	270, 429, 831
DpnII	GATC	3 cut(s)	268, 427, 829
DraI	TTTAAA	2 cut(s)	73, 631
Eam1104I	CTCTTC	2 cut(s)	5, 336
EarI	CTCTTC	2 cut(s)	5, 336
Eco130I	CCWWGG	1 cut(s)	810
Eco24I	GRGCYC	1 cut(s)	767
Eco32I	GATATC	1 cut(s)	1025
Eco47I	GGWCC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	956
Eco88I	CYCGRG	1 cut(s)	858
EcoO109I	RGGNCCY	1 cut(s)	763
EcoRII	CCWGG	3 cut(s)	229, 368, 526
EcoRV	GATATC	1 cut(s)	1025
EcoT14I	CCWWGG	1 cut(s)	810
EcoT38I	GRGCYC	1 cut(s)	767
ErhI	CCWWGG	1 cut(s)	810
FaeI	CATG	2 cut(s)	613, 1132
FalI	AAGNNNNNCTT	2 cut(s)	1097, 1129
FaqI	GGGAC	2 cut(s)	538, 840
FatI	CATG	2 cut(s)	609, 1128
FblI	GTMKAC	1 cut(s)	167
FokI	GGATG	3 cut(s)	255, 680, 700
FriOI	GRGCYC	1 cut(s)	767
FspBI	CTAG	8 cut(s)	497, 540, 657, 684, 698, 998, 1020, 1303
GlaI	GCGC	1 cut(s)	1056
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	1 cut(s)	765
HapII	CCGG	4 cut(s)	98, 767, 859, 888
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	1 cut(s)	1057
Hin1I	GRCGYC	1 cut(s)	235
Hin1II	CATG	2 cut(s)	613, 1132
Hin6I	GCGC	1 cut(s)	1055
HinP1I	GCGC	1 cut(s)	1055
HincII	GTYRAC	2 cut(s)	681, 969
HindII	GTYRAC	2 cut(s)	681, 969
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	5 cut(s)	41, 101, 290, 468, 853
HpaI	GTTAAC	2 cut(s)	681, 969
HpaII	CCGG	4 cut(s)	98, 767, 859, 888
HphI	GGTGA	3 cut(s)	981, 1168, 1190
Hpy166II	GTNNAC	3 cut(s)	168, 681, 969
Hpy188I	TCNGA	4 cut(s)	52, 135, 201, 441
Hpy188III	TCNNGA	7 cut(s)	38, 497, 657, 743, 998, 1013, 1105
Hpy8I	GTNNAC	3 cut(s)	168, 681, 969
HpyAV	CCTTC	2 cut(s)	140, 614
HpyCH4III	ACNGT	3 cut(s)	160, 1078, 1178
HpyCH4V	TGCA	3 cut(s)	251, 842, 1248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	937
HpyF3I	CTNAG	9 cut(s)	205, 381, 557, 822, 875, 950, 980, 1187, 1236
Hsp92I	GRCGYC	1 cut(s)	235
Hsp92II	CATG	2 cut(s)	613, 1132
HspAI	GCGC	1 cut(s)	1055
KspAI	GTTAAC	2 cut(s)	681, 969
Kzo9I	GATC	3 cut(s)	268, 427, 829
LmnI	GCTCC	1 cut(s)	739
MaeI	CTAG	8 cut(s)	497, 540, 657, 684, 698, 998, 1020, 1303
MaeIII	GTNAC	3 cut(s)	113, 560, 1219
MalI	GATC	3 cut(s)	270, 429, 831
MboI	GATC	3 cut(s)	268, 427, 829
MhlI	GDGCHC	1 cut(s)	767
MluCI	AATT	7 cut(s)	18, 92, 443, 922, 1084, 1193, 1254
MlyI	GAGTC	2 cut(s)	284, 862
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	7 cut(s)	58, 233, 249, 566, 1112, 1135, 1222
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	8 cut(s)	72, 579, 630, 680, 968, 1029, 1170, 1259
MspI	CCGG	4 cut(s)	98, 767, 859, 888
MspR9I	CCNGG	6 cut(s)	231, 370, 528, 767, 859, 860
MvaI	CCWGG	3 cut(s)	231, 370, 528
MvnI	CGCG	2 cut(s)	273, 288
MwoI	GCNNNNNNNGC	1 cut(s)	937
NciI	CCSGG	3 cut(s)	767, 859, 860
NdeII	GATC	3 cut(s)	268, 427, 829
NlaIII	CATG	2 cut(s)	613, 1132
NlaIV	GGNNCC	2 cut(s)	311, 765
NmeAIII	GCCGAG	1 cut(s)	263
NmuCI	GTSAC	3 cut(s)	113, 560, 1219
NspV	TTCGAA	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	41, 101, 468
PleI	GAGTC	2 cut(s)	284, 861
PpsI	GAGTC	2 cut(s)	284, 861
Psp6I	CCWGG	3 cut(s)	229, 368, 526
PspGI	CCWGG	3 cut(s)	229, 368, 526
PspN4I	GGNNCC	2 cut(s)	311, 765
PspOMI	GGGCCC	1 cut(s)	763
PspPI	GGNCC	3 cut(s)	153, 763, 764
RsaI	GTAC	3 cut(s)	108, 285, 1215
RsaNI	GTAC	3 cut(s)	107, 284, 1214
SaqAI	TTAA	8 cut(s)	72, 579, 630, 680, 968, 1029, 1170, 1259
Sau3AI	GATC	3 cut(s)	268, 427, 829
Sau96I	GGNCC	3 cut(s)	153, 763, 764
ScaI	AGTACT	1 cut(s)	108
SchI	GAGTC	2 cut(s)	284, 862
ScrFI	CCNGG	6 cut(s)	231, 370, 528, 767, 859, 860
SduI	GDGCHC	1 cut(s)	767
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	1 cut(s)	153
SmaI	CCCGGG	1 cut(s)	860
SmlI	CTYRAG	2 cut(s)	548, 1103
SmoI	CTYRAG	2 cut(s)	548, 1103
SpeI	ACTAGT	1 cut(s)	683
Sse9I	AATT	7 cut(s)	18, 92, 443, 922, 1084, 1193, 1254
SsiI	CCGC	2 cut(s)	151, 1154
SspI	AATATT	1 cut(s)	1163
SspMI	CTAG	8 cut(s)	497, 540, 657, 684, 698, 998, 1020, 1303
StyD4I	CCNGG	6 cut(s)	229, 368, 526, 765, 857, 858
StyI	CCWWGG	1 cut(s)	810
TaaI	ACNGT	3 cut(s)	160, 1078, 1178
TaqI	TCGA	4 cut(s)	44, 63, 642, 744
TasI	AATT	7 cut(s)	18, 92, 443, 922, 1084, 1193, 1254
TatI	WGTACW	2 cut(s)	106, 1213
TfiI	GAWTC	3 cut(s)	41, 101, 468
Tru1I	TTAA	8 cut(s)	72, 579, 630, 680, 968, 1029, 1170, 1259
Tru9I	TTAA	8 cut(s)	72, 579, 630, 680, 968, 1029, 1170, 1259
TscAI	CASTG	2 cut(s)	385, 565
TseFI	GTSAC	3 cut(s)	113, 560, 1219
Tsp45I	GTSAC	3 cut(s)	113, 560, 1219
TspDTI	ATGAA	5 cut(s)	679, 720, 935, 1117, 1256
TspGWI	ACGGA	2 cut(s)	236, 986
TspMI	CCCGGG	1 cut(s)	858
TspRI	CASTG	2 cut(s)	385, 565
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	3 cut(s)	922, 1193, 1254
XbaI	TCTAGA	3 cut(s)	496, 656, 997
XmaI	CCCGGG	1 cut(s)	858
XmiI	GTMKAC	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	8 cut(s)	497, 540, 657, 684, 698, 998, 1020, 1303
ZrmI	AGTACT	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.