Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002973

Physical Location & Seq

Genomic Coordinates Reverse (-)

3730985 .. 3736380

Gene Structure 5396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010701

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3126 bp

ATGTACGCGGTTGGGAGGTTAGGGAGCTACATCTCGAGGGGGGTATACACCGTCTCGGGGCCCTTTCACCCTTTTGGTGGAGCTGTGGATATTATTGTAGTTCAACAAGAAGATGGGAGCTTCAAGTCTTCGGCATGGAATGTCAGGCTTGGCAAGTTTCAAGGAGTTTTGAAGTCCAAGGAGAAGGTGGTGAACATTTGTGTAAATGGAGAGGAGGCTAGTTTCCACATGTATTTGGATAATAAAGGGGAGGCTTACTTCCTTAGGGAGGTTGATGCAAAAGAAGGGGAATCTGTGTCGTTTCCTTCCACGTCTTCCAGTGATGAGACGGATGAGCAATCTCGAGAAAAGAGGCAGCCAGTGAAGTCCAAAAGTTGCAAGTATGATGCTGAAAGTTTGATTGTTGATCATAATAATAAGTGCAATGGGAAGGTATTATCCAGGACTAATTCCCGGAAGTCGCGGATGTTTGGGATATTTGGAAACAGGTCAATGAAGGAGAGAATGACGGTCAATGAGGAGGCAGAGGGTGATAATAGCACGATTGGAAGGGTGGATTCTTTGGAGCGTGCAGAGTTTGCGGCCAACCTTTTGGAGGTGAAATGGTCCACTAGTCTTGCCACCAAGAAAAACAGGAAAGAGGGTGGTTCTCGTCTCTCTTGTCCTGATATTTTGGAGAGTGGAGTTGATGAAGATATGCAGATTAGTTCTGAGCACCGCCGGGTGTGCTCATCTCTACCTGATTGTGCTTTGCAGGAGGCGACCGCCTTCTGCAATGCCCAAATAGGCAATGATCCTCTGTCTGGCTTTGACAAAACACCTAGTTATGCGGAGGAAGCTAGTCTAATTTCATGTTTAAACACCCCGAATATAGTGTCTAGAGTATGCAGAGAATTGGATGAGTCTGGGGCAACTGAAAATGATGGGAATGTAAAGGCACTCGTATCCAATATCACAGGTTCGGATCCTACAATTCCACACTCACTAGAGGTGGAAGCATTTCCATTTCCTGGAAAGCATTTTGTTGGACAGGTTTTTGATGACAAAGGTGTTGTACTAGCTGGCTGTGGCATTTCCGAGAAGGACGGTGGAATAGATAGAGTTGAATCCTTTATTTACTGTCAATCATCAGAGAGCGCAGTAGTGGGAACAGATGGTTCCAGCGAACAAACTCATGAAAAACTTTACATTGCTAGAGGAGATTGTGGAAAAGTTCATGTTCATGCCGAAGCAGTACATGCCAGAACTGAACTGCTATCTAAGGATGCAGTTACTGAGCAGTTTGTTGAAGATATTGCCTTAAAGGTGCAACCATTGGAGGCTCCTGAAACTTATTCTCACGAAACAGCTCATCATTCTTGCACGGGTAACCATAATGGGGACCTTGGAGGGCCAGCTAAAGCTCCAGAGCACTGTAGTCAAATGGTCCATATTAATGTATTGCCTGATTCAGTTGAGATTGAGTCACGTATCCTACCTAGGTTAAGCAATTCTGACCATCAAGTTCAAGATGAGAAAGAATTTAAAGGCGAAGATATCACATGTGATGTCCAAACCTCTTCCGGGTACATTAGTGGTTCTGAAATCACTGAAGCCGCAAGTGTGGTGCCACCAGGGAGATTAGAAGAAGAACAATTCCTTTTCAGTGACTCTGACGAACTCAACACCACTAAGGTTCAATGCACGGAGTCAAGTTCTGCACAATGTGTAGATGGAGAAATTAGTGTCTTGTGTAGTCCAGATGGCAGTAAAGAATTTAATGGGTCAGCAGTCAGTACAAATTATGAATCATATTCGTCTCCAGAAAAGTTTGCTCAAGAAATCCCCTCAACTGGTTTTGAGAAAGTTATAGGTAAACTGAAGGCAACATCAACTACAGTCGACATCCCCAGAAATAAAAAAGCTGCTGATAAGGAAGTTGGGACGCTCGTGGAATCATTGCCCAGTATGTGGCATCAAACTGACAATTTGAGTGCATTGGATCTTGATGCTCCTTTAAGCCATTCGCTGGACTCAAAAGCCAAAACCTTGAAGTGGATACAGCAAAATAGAGATGATTTGAGCTGTATAAAGTTGGATTTAGAGCAACAGTTACCTCTCGTAAAGCTAGATGCTGAGAATGCTGAGGGTACAGAGGAGCTCAAAGATGTTCCTGGCGGTCCTGCACTAGGAGATCCATCAAAAGCAAGTGTTACCCCAAGTGGAAGCTGGAAACTCTGGCCATTCCGTTTCAGGAGAACAAATTCCCAGAAGGCTATGCAACCAAATCTGAATGATTGTGGAAGTCCTGAAGTTGATAATGCTTCAGAGAGCGCGTTTGATGGGGATAGTAGTAACACTGTGGTTACACCGAAGGGGATGAAGAAAACAGAAAGGGCAACCTCTCCGACATCTGAGCAGCTGGCATCCTTAAATCTAAATGAAGGGAGAAATACAGTAACTTTCACATTCTCTACTGCAATGCTAGGAAAGCAGCAGGTTGATGCCAGAATTTATCTTTGGAAATGGAATACTCGTATAGTGATCTCAGATGTGGATGGGACAATCACAAAATCAGACGTTCTAGGTCAGTTCATGCCCTTGGTTGGTGTAGATTGGTCACAAACAGGTGTCACACATTTGTTTTCAGCCATTAAGGAAAATGGATATGAATTACTTTTTTTGAGTGCACGTGCCATTTCTCAGTCCTCTCAGACGCGACAATTTCTGTTTAACCTTAAGCAGGATGGGAAGGCTTTACCTGATGGGCCCGTTGTTATTTCTCCAGATGGACTCTTTCCTTCTCTTTTTCGGGAAGTTATCCGGAGGGCTCCTCATGAATTCAAGATTGCATGCTTAGAGGATATCAAATCATTGTTCCCTTCTGATTGCAACCCGTTCTATGCTGGTTTTGGAAACAGAGATACTGATGAATTCAGCTACCTAAAGGTTGGAATCCCCTTGGGTAAAATCTTCATCATTAATCCCAAGGGTGAGATTGTTGTGAACCGCCGTGTTGACGCAAAGACATATACCTCCCTTCATGCTCTCGTAAATGGCATGTTTCCCCCCACAACCTCCTCACACGAGCGGGAGGACTTTAATTCGTGGAATTTCTGGAAACTCCCACCACCTGATGTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009247 GO:0009987 GO:0016020 GO:0019374 GO:0019375 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0048046 GO:0071704 GO:0090407 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

LNS2 Lipin_N Lipin_mid

Protein Analysis

1042

Amino Acids

114.01

Weight (kDa)

5.06

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipin_N	PF04571	12 - 97	5.5e-27	lipin, N-terminal conserved region
LNS2	PF08235	794 - 1016	1.5e-94	LNS2 (Lipin/Ned1/Smp2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42870 AT5G42870
fragaria_vesca	FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540
malus_domestica	MD15G1030100.v1.1 MD15G1084000.v1.1
prunus_persica	Prupe.1G437400_v2.0.a1 Prupe.1G437400_v2.0.a1 Prupe.1G437400_v2.0.a1
pyrus_communis	pycom08g08400 pycom15g07920
rosa_chinensis	RchiOBHm_Chr6g0307611 RchiOBHm_Chr6g0307781
rosa_laevigata	RLG00000010701
rosa_multiflora	Rmu_sc0000031.1_g000031
rosa_roxburghii	Rroxscaffold_7G00160890
rosa_rugosa	Rorug06G0360900
rosa_samantha	Rh6AG469900 Rh6BG480400 Rh6CG486100 Rh6DG472500
rosa_wichuraiana	Rw6G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2467
AccB1I	GGYRCC	1 cut(s)	1606
AccB7I	CCANNNNNTGG	3 cut(s)	1010, 1950, 2008
AccBSI	CCGCTC	1 cut(s)	3070
AccI	GTMKAC	2 cut(s)	45, 1881
AccII	CGCG	4 cut(s)	8, 463, 2315, 2698
AccIII	TCCGGA	1 cut(s)	2802
AclWI	GGATC	5 cut(s)	788, 959, 972, 1989, 2168
AcoI	YGGCCR	2 cut(s)	582, 2219
AcsI	RAATTY	7 cut(s)	1520, 1754, 2242, 2490, 2819, 2912, 3091
AcuI	CTGAAG	4 cut(s)	1611, 1880, 2289, 2310
AcvI	CACGTG	1 cut(s)	2672
AdeI	CACNNNGTG	1 cut(s)	1706
AfaI	GTAC	6 cut(s)	5, 1056, 1236, 1568, 1777, 2131
AflII	CTTAAG	1 cut(s)	2717
AflIII	ACRYGT	2 cut(s)	228, 1541
AhlI	ACTAGT	1 cut(s)	611
AjiI	CACGTC	1 cut(s)	312
AjnI	CCWGG	4 cut(s)	440, 1009, 1612, 2152
AjuI	GAANNNNNNNTTGG	2 cut(s)	2482, 2514
Alw21I	GWGCWC	5 cut(s)	717, 731, 1413, 2142, 2671
Alw26I	GTCTC	4 cut(s)	58, 320, 659, 1803
Alw44I	GTGCAC	1 cut(s)	2667
AlwI	GGATC	5 cut(s)	788, 959, 972, 1989, 2168
AlwNI	CAGNNNCTG	1 cut(s)	1274
Ama87I	CYCGRG	3 cut(s)	34, 55, 342
Aor13HI	TCCGGA	1 cut(s)	2802
AoxI	GGCC	5 cut(s)	59, 582, 1391, 2219, 2747
ApaI	GGGCCC	2 cut(s)	63, 2751
ApaLI	GTGCAC	1 cut(s)	2667
ApeKI	GCWGC	4 cut(s)	355, 1904, 2398, 2473
ApoI	RAATTY	7 cut(s)	1520, 1754, 2242, 2490, 2819, 2912, 3091
ArsI	GACNNNNNNTTYG	2 cut(s)	860, 892
AseI	ATTAAT	2 cut(s)	1434, 2961
Asp700I	GAANNNNTTC	2 cut(s)	999, 2242
AspA2I	CCTAGG	1 cut(s)	1478
AspLEI	GCGC	2 cut(s)	1139, 2315
AspS9I	GGNCC	9 cut(s)	59, 60, 606, 1381, 1391, 1426, 2159, 2747, 2748
AsuC2I	CCSGG	3 cut(s)	454, 722, 1564
AsuHPI	GGTGA	5 cut(s)	59, 202, 542, 610, 2984
AvaI	CYCGRG	3 cut(s)	34, 55, 342
AvaII	GGWCC	4 cut(s)	606, 1381, 1426, 2159
AvrII	CCTAGG	1 cut(s)	1478
AxyI	CCTNAGG	1 cut(s)	263
BaeGI	GKGCMC	3 cut(s)	63, 2671, 2751
BaeI	ACNNNNGTAYC	2 cut(s)	1558, 1591
BalI	TGGCCA	1 cut(s)	2221
BamHI	GGATCC	1 cut(s)	964
BanI	GGYRCC	1 cut(s)	1606
BanII	GRGCYC	4 cut(s)	63, 2142, 2751, 2812
BauI	CACGAG	2 cut(s)	1928, 3065
BbrPI	CACGTG	1 cut(s)	2672
BbsI	GAAGAC	2 cut(s)	120, 306
Bbv12I	GWGCWC	5 cut(s)	717, 731, 1413, 2142, 2671
BbvCI	CCTCAGC	1 cut(s)	2124
BbvI	GCAGC	4 cut(s)	367, 1891, 2410, 2485
BceAI	ACGGC	1 cut(s)	2976
BciT130I	CCWGG	4 cut(s)	442, 1011, 1614, 2154
BciVI	GTATCC	3 cut(s)	955, 1481, 2031
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	3 cut(s)	454, 722, 1564
BcoDI	GTCTC	4 cut(s)	58, 320, 659, 1803
BcuI	ACTAGT	1 cut(s)	611
BfmI	CTRYAG	2 cut(s)	1414, 1875
BfrI	CTTAAG	1 cut(s)	2717
BfuAI	ACCTGC	1 cut(s)	2467
BfuI	GTATCC	3 cut(s)	955, 1481, 2031
BisI	GCNGC	6 cut(s)	356, 582, 1596, 1905, 2399, 2474
BlnI	CCTAGG	1 cut(s)	1478
BlsI	GCNGC	6 cut(s)	357, 583, 1597, 1906, 2400, 2475
Bme1390I	CCNGG	7 cut(s)	442, 454, 722, 1011, 1564, 1614, 2154
Bme18I	GGWCC	4 cut(s)	606, 1381, 1426, 2159
BmeT110I	CYCGRG	3 cut(s)	34, 55, 342
BmgBI	CACGTC	1 cut(s)	312
BmgT120I	GGNCC	9 cut(s)	59, 60, 606, 1381, 1391, 1426, 2159, 2747, 2748
BmiI	GGNNCC	9 cut(s)	60, 61, 966, 1159, 1323, 1382, 1608, 2749, 2811
BmrFI	CCNGG	7 cut(s)	442, 454, 722, 1011, 1564, 1614, 2154
BmrI	ACTGGG	1 cut(s)	1938
BmsI	GCATC	8 cut(s)	265, 376, 1255, 1963, 1978, 2101, 2414, 2473
BmuI	ACTGGG	1 cut(s)	1938
BpiI	GAAGAC	2 cut(s)	120, 306
BplI	GAGNNNNNCTC	2 cut(s)	2797, 2829
BpmI	CTGGAG	3 cut(s)	1389, 1785, 2748
Bpu10I	CCTNAGC	1 cut(s)	2124
BpuEI	CTTGAG	1 cut(s)	1800
BpuMI	CCSGG	3 cut(s)	454, 722, 1564
BsaAI	YACGTR	2 cut(s)	1469, 2672
BsaJI	CCNNGG	7 cut(s)	177, 1384, 1478, 1613, 2580, 2940, 2967
BsaWI	WCCGGW	1 cut(s)	2802
Bse1I	ACTGG	4 cut(s)	318, 359, 1837, 1944
Bse21I	CCTNAGG	1 cut(s)	263
Bse3DI	GCAATG	6 cut(s)	430, 781, 796, 1188, 1937, 2466
BseAI	TCCGGA	1 cut(s)	2802
BseBI	CCWGG	4 cut(s)	442, 1011, 1614, 2154
BseDI	CCNNGG	7 cut(s)	177, 1384, 1478, 1613, 2580, 2940, 2967
BseGI	GGATG	9 cut(s)	337, 471, 904, 1270, 1884, 2364, 2405, 2542, 2731
BseMI	GCAATG	6 cut(s)	430, 781, 796, 1188, 1937, 2466
BseMII	CTCAG	8 cut(s)	702, 1266, 2106, 2115, 2385, 2541, 2696, 2705
BseNI	ACTGG	4 cut(s)	318, 359, 1837, 1944
BseRI	GAGGAG	6 cut(s)	227, 533, 1212, 2150, 2802, 3049
BseSI	GKGCMC	3 cut(s)	63, 2671, 2751
BseXI	GCAGC	4 cut(s)	367, 1891, 2410, 2485
BsgI	GTGCAG	3 cut(s)	591, 1683, 2148
Bsh1236I	CGCG	4 cut(s)	8, 463, 2315, 2698
Bsh1285I	CGRYCG	1 cut(s)	765
BshFI	GGCC	5 cut(s)	61, 584, 1393, 2221, 2749
BshNI	GGYRCC	1 cut(s)	1606
BsiEI	CGRYCG	1 cut(s)	765
BsiHKAI	GWGCWC	5 cut(s)	717, 731, 1413, 2142, 2671
BsiHKCI	CYCGRG	3 cut(s)	34, 55, 342
BsiSI	CCGG	4 cut(s)	454, 721, 1563, 2803
BslFI	GGGAC	3 cut(s)	1394, 1936, 2554
BsmAI	GTCTC	4 cut(s)	58, 320, 659, 1803
BsmBI	CGTCTC	4 cut(s)	58, 320, 659, 1803
BsmFI	GGGAC	3 cut(s)	1394, 1936, 2554
BsmI	GAATGC	1 cut(s)	2125
BsnI	GGCC	5 cut(s)	61, 584, 1393, 2221, 2749
BsoBI	CYCGRG	3 cut(s)	34, 55, 342
Bsp120I	GGGCCC	2 cut(s)	59, 2747
Bsp1286I	GDGCHC	8 cut(s)	63, 717, 731, 1413, 2142, 2671, 2751, 2812
Bsp13I	TCCGGA	1 cut(s)	2802
Bsp143I	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
BspANI	GGCC	5 cut(s)	61, 584, 1393, 2221, 2749
BspCNI	CTCAG	8 cut(s)	703, 1267, 2107, 2116, 2386, 2540, 2695, 2704
BspEI	TCCGGA	1 cut(s)	2802
BspFNI	CGCG	4 cut(s)	8, 463, 2315, 2698
BspHI	TCATGA	2 cut(s)	1174, 2815
BspLI	GGNNCC	9 cut(s)	60, 61, 966, 1159, 1323, 1382, 1608, 2749, 2811
BspMI	ACCTGC	1 cut(s)	2467
BspPI	GGATC	5 cut(s)	788, 959, 972, 1989, 2168
BspT107I	GGYRCC	1 cut(s)	1606
BspTI	CTTAAG	1 cut(s)	2717
BsrBI	CCGCTC	1 cut(s)	3070
BsrDI	GCAATG	6 cut(s)	430, 781, 796, 1188, 1937, 2466
BsrI	ACTGG	4 cut(s)	318, 359, 1837, 1944
BssECI	CCNNGG	7 cut(s)	177, 1384, 1478, 1613, 2580, 2940, 2967
BssMI	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
BssNAI	GTATAC	1 cut(s)	46
BssSI	CACGAG	2 cut(s)	1928, 3065
BssT1I	CCWWGG	6 cut(s)	177, 1384, 1478, 2580, 2940, 2967
Bst1107I	GTATAC	1 cut(s)	46
Bst2BI	CACGAG	2 cut(s)	1928, 3065
Bst2UI	CCWGG	4 cut(s)	442, 1011, 1614, 2154
Bst4CI	ACNGT	9 cut(s)	52, 511, 1088, 1121, 1415, 1879, 2091, 2341, 2437
Bst6I	CTCTTC	1 cut(s)	1564
BstAFI	CTTAAG	1 cut(s)	2717
BstAPI	GCANNNNNTGC	2 cut(s)	578, 1238
BstBAI	YACGTR	2 cut(s)	1469, 2672
BstC8I	GCNNGC	5 cut(s)	570, 1063, 1395, 2403, 2833
BstEII	GGTNACC	1 cut(s)	1367
BstENI	CCTNNNNNAGG	4 cut(s)	266, 593, 2166, 2720
BstF5I	GGATG	9 cut(s)	337, 471, 904, 1270, 1884, 2364, 2405, 2542, 2731
BstFNI	CGCG	4 cut(s)	8, 463, 2315, 2698
BstHHI	GCGC	2 cut(s)	1139, 2315
BstKTI	GATC	6 cut(s)	409, 796, 967, 1984, 2176, 2526
BstMAI	GTCTC	4 cut(s)	58, 320, 659, 1803
BstMBI	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
BstMCI	CGRYCG	1 cut(s)	765
BstMWI	GCNNNNNNNGC	6 cut(s)	578, 726, 836, 1238, 2120, 2470
BstNI	CCWGG	4 cut(s)	442, 1011, 1614, 2154
BstNSI	RCATGY	5 cut(s)	232, 1241, 1545, 2835, 3043
BstPI	GGTNACC	1 cut(s)	1367
BstSCI	CCNGG	7 cut(s)	440, 452, 720, 1009, 1562, 1612, 2152
BstSFI	CTRYAG	2 cut(s)	1414, 1875
BstSLI	GKGCMC	3 cut(s)	63, 2671, 2751
BstUI	CGCG	4 cut(s)	8, 463, 2315, 2698
BstV1I	GCAGC	4 cut(s)	367, 1891, 2410, 2485
BstV2I	GAAGAC	2 cut(s)	120, 306
BstX2I	RGATCY	3 cut(s)	964, 1981, 2173
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstYI	RGATCY	3 cut(s)	964, 1981, 2173
BstZ17I	GTATAC	1 cut(s)	46
Bsu36I	CCTNAGG	1 cut(s)	263
BsuI	GTATCC	3 cut(s)	955, 1481, 2031
BsuRI	GGCC	5 cut(s)	61, 584, 1393, 2221, 2749
BtrI	CACGTC	1 cut(s)	312
BtsCI	GGATG	9 cut(s)	337, 471, 904, 1270, 1884, 2364, 2405, 2542, 2731
BtsIMutI	CAGTG	6 cut(s)	325, 366, 1411, 1587, 1651, 2337
BveI	ACCTGC	1 cut(s)	2467
Cac8I	GCNNGC	5 cut(s)	570, 1063, 1395, 2403, 2833
CaiI	CAGNNNCTG	1 cut(s)	1274
CciI	TCATGA	2 cut(s)	1174, 2815
CfoI	GCGC	2 cut(s)	1139, 2315
Cfr13I	GGNCC	9 cut(s)	59, 60, 606, 1381, 1391, 1426, 2159, 2747, 2748
CseI	GACGC	3 cut(s)	1933, 2704, 3008
Csp6I	GTAC	6 cut(s)	4, 1055, 1235, 1567, 1776, 2130
CspCI	CAANNNNNGTGG	2 cut(s)	598, 633
CviQI	GTAC	6 cut(s)	4, 1055, 1235, 1567, 1776, 2130
DpnI	GATC	6 cut(s)	408, 795, 966, 1983, 2175, 2525
DpnII	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
DraI	TTTAAA	2 cut(s)	858, 1525
DraIII	CACNNNGTG	1 cut(s)	1706
EaeI	YGGCCR	2 cut(s)	582, 2219
Eam1104I	CTCTTC	1 cut(s)	1564
EarI	CTCTTC	1 cut(s)	1564
Ecl136II	GAGCTC	1 cut(s)	2140
Eco130I	CCWWGG	6 cut(s)	177, 1384, 1478, 2580, 2940, 2967
Eco24I	GRGCYC	4 cut(s)	63, 2142, 2751, 2812
Eco32I	GATATC	2 cut(s)	1537, 2845
Eco47I	GGWCC	4 cut(s)	606, 1381, 1426, 2159
Eco53kI	GAGCTC	1 cut(s)	2140
Eco57I	CTGAAG	4 cut(s)	1611, 1880, 2289, 2310
Eco72I	CACGTG	1 cut(s)	2672
Eco81I	CCTNAGG	1 cut(s)	263
Eco88I	CYCGRG	3 cut(s)	34, 55, 342
Eco91I	GGTNACC	1 cut(s)	1367
EcoICRI	GAGCTC	1 cut(s)	2140
EcoNI	CCTNNNNNAGG	4 cut(s)	266, 593, 2166, 2720
EcoO109I	RGGNCCY	3 cut(s)	59, 60, 1381
EcoO65I	GGTNACC	1 cut(s)	1367
EcoRI	GAATTC	2 cut(s)	2819, 2912
EcoRII	CCWGG	4 cut(s)	440, 1009, 1612, 2152
EcoRV	GATATC	2 cut(s)	1537, 2845
EcoT14I	CCWWGG	6 cut(s)	177, 1384, 1478, 2580, 2940, 2967
EcoT38I	GRGCYC	4 cut(s)	63, 2142, 2751, 2812
ErhI	CCWWGG	6 cut(s)	177, 1384, 1478, 2580, 2940, 2967
Esp3I	CGTCTC	4 cut(s)	58, 320, 659, 1803
FaqI	GGGAC	3 cut(s)	1394, 1936, 2554
FauI	CCCGC	1 cut(s)	3063
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	2 cut(s)	45, 1881
Fnu4HI	GCNGC	6 cut(s)	356, 582, 1596, 1905, 2399, 2474
FokI	GGATG	9 cut(s)	344, 478, 911, 1277, 1871, 2371, 2392, 2549, 2738
FriOI	GRGCYC	4 cut(s)	63, 2142, 2751, 2812
Fsp4HI	GCNGC	6 cut(s)	356, 582, 1596, 1905, 2399, 2474
GlaI	GCGC	2 cut(s)	1138, 2314
GluI	GCNGC	6 cut(s)	356, 582, 1596, 1905, 2399, 2474
GsuI	CTGGAG	3 cut(s)	1389, 1785, 2748
HaeIII	GGCC	5 cut(s)	61, 584, 1393, 2221, 2749
HapII	CCGG	4 cut(s)	454, 721, 1563, 2803
HgaI	GACGC	3 cut(s)	1933, 2704, 3008
HhaI	GCGC	2 cut(s)	1139, 2315
Hin6I	GCGC	2 cut(s)	1137, 2313
HinP1I	GCGC	2 cut(s)	1137, 2313
HincII	GTYRAC	2 cut(s)	1882, 2998
HindII	GTYRAC	2 cut(s)	1882, 2998
HpaII	CCGG	4 cut(s)	454, 721, 1563, 2803
HphI	GGTGA	5 cut(s)	59, 202, 542, 610, 2984
Hpy166II	GTNNAC	8 cut(s)	46, 193, 609, 1856, 1882, 2669, 2986, 2998
Hpy8I	GTNNAC	8 cut(s)	46, 193, 609, 1856, 1882, 2669, 2986, 2998
HpyCH4III	ACNGT	9 cut(s)	52, 511, 1088, 1121, 1415, 1879, 2091, 2341, 2437
HpyCH4IV	ACGT	4 cut(s)	311, 1468, 2559, 2671
HpyF10VI	GCNNNNNNNGC	6 cut(s)	578, 726, 836, 1238, 2120, 2470
HpySE526I	ACGT	4 cut(s)	311, 1468, 2559, 2671
HspAI	GCGC	2 cut(s)	1137, 2313
Kpn2I	TCCGGA	1 cut(s)	2802
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
LmnI	GCTCC	9 cut(s)	24, 80, 117, 565, 1327, 1408, 1996, 2137, 2815
Lsp1109I	GCAGC	4 cut(s)	367, 1891, 2410, 2485
LweI	GCATC	8 cut(s)	265, 376, 1255, 1963, 1978, 2101, 2414, 2473
MaeII	ACGT	4 cut(s)	311, 1468, 2559, 2671
MalI	GATC	6 cut(s)	408, 795, 966, 1983, 2175, 2525
MbiI	CCGCTC	1 cut(s)	3070
MboI	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
MflI	RGATCY	3 cut(s)	964, 1981, 2173
MhlI	GDGCHC	8 cut(s)	63, 717, 731, 1413, 2142, 2671, 2751, 2812
MlsI	TGGCCA	1 cut(s)	2221
MluNI	TGGCCA	1 cut(s)	2221
MlyI	GAGTC	6 cut(s)	911, 1472, 1643, 1697, 2006, 2766
MmeI	TCCRAC	4 cut(s)	1006, 2055, 2411, 2911
Mox20I	TGGCCA	1 cut(s)	2221
MroI	TCCGGA	1 cut(s)	2802
MroXI	GAANNNNTTC	2 cut(s)	999, 2242
MscI	TGGCCA	1 cut(s)	2221
MslI	CAYNNNNRTG	2 cut(s)	1221, 1434
Msp20I	TGGCCA	1 cut(s)	2221
MspA1I	CMGCKG	1 cut(s)	2401
MspCI	CTTAAG	1 cut(s)	2717
MspI	CCGG	4 cut(s)	454, 721, 1563, 2803
MspR9I	CCNGG	7 cut(s)	442, 454, 722, 1011, 1564, 1614, 2154
MssI	GTTTAAAC	1 cut(s)	858
Mva1269I	GAATGC	1 cut(s)	2125
MvaI	CCWGG	4 cut(s)	442, 1011, 1614, 2154
MvnI	CGCG	4 cut(s)	8, 463, 2315, 2698
MwoI	GCNNNNNNNGC	6 cut(s)	578, 726, 836, 1238, 2120, 2470
NciI	CCSGG	3 cut(s)	454, 722, 1564
NdeII	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
NlaIV	GGNNCC	9 cut(s)	60, 61, 966, 1159, 1323, 1382, 1608, 2749, 2811
NmuCI	GTSAC	4 cut(s)	1464, 1646, 2598, 2611
NspI	RCATGY	5 cut(s)	232, 1241, 1545, 2835, 3043
PaeI	GCATGC	1 cut(s)	2835
PaeR7I	CTCGAG	2 cut(s)	34, 342
PagI	TCATGA	2 cut(s)	1174, 2815
PciI	ACATGT	2 cut(s)	228, 1541
PctI	GAATGC	1 cut(s)	2125
PdmI	GAANNNNTTC	2 cut(s)	999, 2242
PfeI	GAWTC	7 cut(s)	290, 557, 1106, 1448, 1787, 1934, 2934
PflMI	CCANNNNNTGG	3 cut(s)	1010, 1950, 2008
PfoI	TCCNGGA	3 cut(s)	440, 452, 1009
PkrI	GCNGC	6 cut(s)	357, 583, 1597, 1906, 2400, 2475
PleI	GAGTC	6 cut(s)	910, 1471, 1643, 1696, 2006, 2766
PmaCI	CACGTG	1 cut(s)	2672
PmeI	GTTTAAAC	1 cut(s)	858
PmlI	CACGTG	1 cut(s)	2672
PpsI	GAGTC	6 cut(s)	910, 1471, 1643, 1696, 2006, 2766
Ppu21I	YACGTR	2 cut(s)	1469, 2672
PpuMI	RGGWCCY	1 cut(s)	1381
PscI	ACATGT	2 cut(s)	228, 1541
PshBI	ATTAAT	2 cut(s)	1434, 2961
Psp124BI	GAGCTC	1 cut(s)	2142
Psp5II	RGGWCCY	1 cut(s)	1381
Psp6I	CCWGG	4 cut(s)	440, 1009, 1612, 2152
PspCI	CACGTG	1 cut(s)	2672
PspEI	GGTNACC	1 cut(s)	1367
PspGI	CCWGG	4 cut(s)	440, 1009, 1612, 2152
PspN4I	GGNNCC	9 cut(s)	60, 61, 966, 1159, 1323, 1382, 1608, 2749, 2811
PspOMI	GGGCCC	2 cut(s)	59, 2747
PspPI	GGNCC	9 cut(s)	59, 60, 606, 1381, 1391, 1426, 2159, 2747, 2748
PspPPI	RGGWCCY	1 cut(s)	1381
PstNI	CAGNNNCTG	1 cut(s)	1274
PsuI	RGATCY	3 cut(s)	964, 1981, 2173
PvuII	CAGCTG	1 cut(s)	2401
RsaI	GTAC	6 cut(s)	5, 1056, 1236, 1568, 1777, 2131
RsaNI	GTAC	6 cut(s)	4, 1055, 1235, 1567, 1776, 2130
RseI	CAYNNNNRTG	2 cut(s)	1221, 1434
SacI	GAGCTC	1 cut(s)	2142
SalI	GTCGAC	1 cut(s)	1880
SatI	GCNGC	6 cut(s)	356, 582, 1596, 1905, 2399, 2474
Sau3AI	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
Sau96I	GGNCC	9 cut(s)	59, 60, 606, 1381, 1391, 1426, 2159, 2747, 2748
SchI	GAGTC	6 cut(s)	911, 1472, 1643, 1697, 2006, 2766
ScrFI	CCNGG	7 cut(s)	442, 454, 722, 1011, 1564, 1614, 2154
SduI	GDGCHC	8 cut(s)	63, 717, 731, 1413, 2142, 2671, 2751, 2812
SfaNI	GCATC	8 cut(s)	265, 376, 1255, 1963, 1978, 2101, 2414, 2473
SfcI	CTRYAG	2 cut(s)	1414, 1875
Sfr274I	CTCGAG	2 cut(s)	34, 342
SinI	GGWCC	4 cut(s)	606, 1381, 1426, 2159
SlaI	CTCGAG	2 cut(s)	34, 342
SmiMI	CAYNNNNRTG	2 cut(s)	1221, 1434
SmlI	CTYRAG	4 cut(s)	34, 342, 1815, 2717
SmoI	CTYRAG	4 cut(s)	34, 342, 1815, 2717
SpeI	ACTAGT	1 cut(s)	611
SphI	GCATGC	1 cut(s)	2835
SstI	GAGCTC	1 cut(s)	2142
StyD4I	CCNGG	7 cut(s)	440, 452, 720, 1009, 1562, 1612, 2152
StyI	CCWWGG	6 cut(s)	177, 1384, 1478, 2580, 2940, 2967
TaaI	ACNGT	9 cut(s)	52, 511, 1088, 1121, 1415, 1879, 2091, 2341, 2437
TaiI	ACGT	4 cut(s)	314, 1471, 2562, 2674
TaqI	TCGA	3 cut(s)	35, 343, 1881
TatI	WGTACW	3 cut(s)	1054, 1234, 1775
TauI	GCSGC	2 cut(s)	584, 1598
TfiI	GAWTC	7 cut(s)	290, 557, 1106, 1448, 1787, 1934, 2934
TscAI	CASTG	6 cut(s)	325, 366, 1418, 1594, 1651, 2344
TseFI	GTSAC	4 cut(s)	1464, 1646, 2598, 2611
TseI	GCWGC	4 cut(s)	355, 1904, 2398, 2473
Tsp45I	GTSAC	4 cut(s)	1464, 1646, 2598, 2611
TspGWI	ACGGA	3 cut(s)	344, 1700, 2216
TspRI	CASTG	6 cut(s)	325, 366, 1418, 1594, 1651, 2344
Van91I	CCANNNNNTGG	3 cut(s)	1010, 1950, 2008
Vha464I	CTTAAG	1 cut(s)	2717
VneI	GTGCAC	1 cut(s)	2667
VpaK11BI	GGWCC	4 cut(s)	606, 1381, 1426, 2159
VspI	ATTAAT	2 cut(s)	1434, 2961
XagI	CCTNNNNNAGG	4 cut(s)	266, 593, 2166, 2720
XapI	RAATTY	7 cut(s)	1520, 1754, 2242, 2490, 2819, 2912, 3091
XbaI	TCTAGA	1 cut(s)	878
XceI	RCATGY	5 cut(s)	232, 1241, 1545, 2835, 3043
XcmI	CCANNNNNNNNNTGG	2 cut(s)	184, 2205
XhoI	CTCGAG	2 cut(s)	34, 342
XmaJI	CCTAGG	1 cut(s)	1478
XmiI	GTMKAC	2 cut(s)	45, 1881
XmnI	GAANNNNTTC	2 cut(s)	999, 2242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.