Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002973

Physical Location & Seq

Genomic Coordinates Reverse (-)

3764700 .. 3771129

Gene Structure 6430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3132 bp

ATGTATGCGGTTGGGAGGTTAGGGAGCTACATCTCGAGGGGGGTATACACCGTCTCGGGGCCCTTTCACCCTTTTGGTGGAGCTGTGGATATTATTGTAGTTCAACAAGAAGATGGGAGCTTCAAGTCTTCGGCATGGAATGTCAGGTTTGGCAAGTTTCAAGGAGTTTTGAAGTCCAAGGAGAAGGTGGTGAACATTTGTGTAAATGGAGAGGAGGCTAGTCTCCACATGTATTTGGATAATAAAGGGGAGGCTTACTTCCTTAGGGAGGTTGATGCAAAAGAAGGGGAGTCTGTGTTGTTTCCTTCCACGTCTTCCAGTGATGAGACGGATGAGCAATCTCGAGAAAAGAGGCAGCCAGTGAAGTCCAAAAGTTGCAAGTATGATGCTGAAAGTTTGATTGTTGATCATAATAATAAGTGCAATGGGAAGGTATTATCCAGGACAAAGTCCCGGAAGTCGCGGGTATTTGGGATATTTGGAAGCAGGTCAATGAAGGAGAGAATGACGGTCAACGAGGAGGCAGAGGGTGACAATAGCACGATTGGAAGGGTGGATTCTTTGGAGCGTGCAGAGTTTGCGGCCAACCTTTTGGAGGTGAAATGGTCCACTAGTCTTGCCACCAAGAAAAACAGGAAAGAGGGTGGTTCTCGTCTCTCTTGTCCTGATATTTTGGAGAGTGGAGTTGATGAAGATATGCAGATTAGTTCTGAGCACCGCCGGGTGTGCTCATCTCTACCTGATTGTGCTTTGCAGGAGGCGACTGCCTTCTGCAATTCTCAAATAGGCAATGATCCTCTGTCTGGCTTTGACAAAACACCTAGTTATGCGGAGGAAGCTAGTCTAATTTCATGTTTAAACACCCCGAATATAGTGTCTAGAGTATGCAGAGAATTGGATGAGTCTGGGGCAACTGAAAATGATGGAAATGTAAAGGCACTCATACCCAATATCACAGGTTCGGATCCTACAATTCCACACTCACTAGAGGTGGAAGCATTTCCATTTCCTGGAAAGCATTTTGTTGGACAGGTTTTTGATGACAAAGGTGTTGTACTAGCTGGCTGTGGCATTTCCGAGAAGGACAGTGGAATAGATAGAGTTGAATCCTTTATTTACTGTCAATCATCAGAGAGCTCAGTAGTGGGAACAGATGGTTCCAGCGAACAAACTCATGAAAAACTTTACATTGCTAGAGGAGATTGTGGAAAACTTCATGTTCATGCTGAAGCAGTACATGCCAGAACTGAACTGCTATCTAAGGATGCGATTACTGAGCAGTTTGTTGAAGATATTGCCTTAAAGGTGCAACCATTGGAGGCTCCTGAAACTTATTCTCACAAACCAGCTCATCATTCTTGCACGGGTAATCATAATGGGGACCTTGGAGGGCCAGCAAAAGCTCCAGAGCACTGTAGTCAAATGGTCCATATTAATGCATTGCCTGATTCAGTTGAGATTGAGTCACGTATCGTATCTAGGTTAAGCAACTCTGACCATCAAGTTCAAGATGAGAAAGAATTTAAAGGCGAAGATATCACATGTGATGTCCAAACCTCTTCCGGGTACATTAGTGGTTCTGAAATCACTGAAGCCACAAGTGTGGTGCCACCAGGGAGATTAGAAGAAGAACAATTCCTTTTCAGTGACTCTGATGAACTCAACACCACTAAGGTTCAATGCACAGAGTCAAGTTTTTCACAATGTGTAGATGGAGAAATTAGTGTCTTGTGTAGTCCAGATGGCAGTAAAGAATTTAATGGGTCAGCCGTCAGTACAAATTATGAATCATACTCATCTCCAGAAAAGTTTGCTCAAGAAATCCCCTCAACTGGTTTTGAGAAAGTTATAGGTAAACTGAAGGCAACATCAACTACAGTCGACATCCCCAGAAATCAAAAAGCTGCTGATAAGGAAGTTGGGATGCTGGTGGAATCATTGCCCAGTATGTGGCATCAGACTGACAATTTGAGTGCATTGGATCTTGATGCTCCTTTAAGCCATTCGCTGGACTCAAAAGCCAAAACCTTGAAGTGGATACAGCAAAATAGAGATGATTTGAGCTGTATAAAGTTGGACATAGAGCAACAGTTACCTCTGGTGAAGCTAGACGCTGAGAATGCTGAGGGTACAGAGGAGCTCAAAGATGTTCCCGTCAGTCCTGCACTAGGAGATCCATCAAAAGCTAGTGTTACCCCTAGTGGAAGCTGGAAACTCTGGCCTTTCCGTTTCAGGAGAACAAATTCCCAGAAGGCTATGCAACCAAATCTGAATGATTGTGGAAGTCCTGAAGTTGAGAATGCTTCAGAGAGCGCGGTTGGTGTGGATAGTAGTAACATTGTGCTTACACCTAAGGGGATGAAGAAAACAGAAAGGGCAACCTCTCCAACATCTGAGCAGTTGGCATCCTTGAATCTAAATGAAGGGAGAAATACAGTAACTTTCACATTTTCTACTGCAATGCTAGGAAAGCAGCAGGTTGATGCCAGAATTTATCTTTGGAAATGGAATACTCGTATAGTGATCTCAGATGTGGATGGGACAATCACAAAATCAGATGTTCTAGGTCAGTTCATGCCCTTGGTTGGTGTAGATTGGTCACAAACAGGTGTCACACATTTGTTTTCAGCCATTAAGGAAAATGGATATGAATTACTTTTTTTGAGTGCACGTGCCATTTCTCAGTCCTCTCAGACGCGACAATTTCTGTTTAACCTTAAGCAGGATGGGAAGGCTTTACCTGATGGGCCCGTTGTTATTTCTCCAGATGGACTTTTTCCTTCTCTTTTTCGGGAAGTTATCCGGAGGGCTCCTCATGAATTCAAGATTGCATGCTTAGAGGATATCAAATCATTGTTCCCTTCTGATTGCAACCCGTTCTATGCTGGTTTTGGAAACAGAGATACTGATGAATTCAGCTACCTTAAGGTTGGAATCCCCTTGGGTAAAATCTTCATCATTAATCCCAAGGGTGAGATTGTTGTGAACCGCCGTGTTGACGCAAAGACATATACCTCCCTTCATGCTCTCGTAAATGGCATGTTCCCCCCACAACCTCCTCACACGAACAGGAGGACTTTAATTCGTGGAATTTCTGGAAACTCCCACCACCTGATGTCAGTTGAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009247 GO:0009987 GO:0016020 GO:0019374 GO:0019375 GO:0019637 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046467 GO:0048046 GO:0071704 GO:0090407 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

LNS2 Lipin_N Lipin_mid

Protein Analysis

1043

Amino Acids

114.3

Weight (kDa)

5.25

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipin_N	PF04571	12 - 96	4.4e-28	lipin, N-terminal conserved region
LNS2	PF08235	794 - 1016	1.5e-94	LNS2 (Lipin/Ned1/Smp2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002973)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42870 AT5G42870
fragaria_vesca	FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540 FvH4_2g34540
malus_domestica	MD15G1030100.v1.1 MD15G1084000.v1.1
prunus_persica	Prupe.1G437400_v2.0.a1 Prupe.1G437400_v2.0.a1 Prupe.1G437400_v2.0.a1
pyrus_communis	pycom08g08400 pycom15g07920
rosa_chinensis	RchiOBHm_Chr6g0307611 RchiOBHm_Chr6g0307781
rosa_laevigata	RLG00000010701
rosa_multiflora	Rmu_sc0000031.1_g000031
rosa_roxburghii	Rroxscaffold_7G00160890
rosa_rugosa	Rorug06G0360900
rosa_samantha	Rh6AG469900 Rh6BG480400 Rh6CG486100 Rh6DG472500
rosa_wichuraiana	Rw6G041030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	477, 2467
AccB1I	GGYRCC	1 cut(s)	1606
AccB7I	CCANNNNNTGG	3 cut(s)	1010, 1950, 2008
AccI	GTMKAC	2 cut(s)	45, 1881
AccII	CGCG	3 cut(s)	463, 2315, 2698
AccIII	TCCGGA	1 cut(s)	2802
AciI	CCGC	7 cut(s)	8, 463, 581, 718, 830, 2315, 2989
AclWI	GGATC	5 cut(s)	788, 959, 972, 1989, 2168
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	7 cut(s)	1520, 1754, 2242, 2490, 2819, 2912, 3090
AcuI	CTGAAG	5 cut(s)	1248, 1611, 1880, 2289, 2310
AcvI	CACGTG	1 cut(s)	2672
AdeI	CACNNNGTG	1 cut(s)	1706
AfaI	GTAC	5 cut(s)	1056, 1236, 1568, 1777, 2131
AflII	CTTAAG	2 cut(s)	2717, 2924
AflIII	ACRYGT	2 cut(s)	228, 1541
AhlI	ACTAGT	1 cut(s)	611
AjiI	CACGTC	1 cut(s)	312
AjnI	CCWGG	3 cut(s)	440, 1009, 1612
AjuI	GAANNNNNNNTTGG	2 cut(s)	2482, 2514
AleI	CACNNNNGTG	1 cut(s)	1601
Alw21I	GWGCWC	6 cut(s)	717, 731, 1139, 1413, 2142, 2671
Alw26I	GTCTC	4 cut(s)	58, 227, 320, 659
Alw44I	GTGCAC	1 cut(s)	2667
AlwI	GGATC	5 cut(s)	788, 959, 972, 1989, 2168
Ama87I	CYCGRG	3 cut(s)	34, 55, 342
Aor13HI	TCCGGA	1 cut(s)	2802
AoxI	GGCC	5 cut(s)	59, 582, 1391, 2219, 2747
ApaI	GGGCCC	2 cut(s)	63, 2751
ApaLI	GTGCAC	1 cut(s)	2667
ApeKI	GCWGC	3 cut(s)	355, 1904, 2473
ApoI	RAATTY	7 cut(s)	1520, 1754, 2242, 2490, 2819, 2912, 3090
ArsI	GACNNNNNNTTYG	4 cut(s)	860, 892, 1951, 1983
AseI	ATTAAT	2 cut(s)	1434, 2961
Asp700I	GAANNNNTTC	2 cut(s)	999, 2242
AspLEI	GCGC	1 cut(s)	2315
AspS9I	GGNCC	8 cut(s)	59, 60, 606, 1381, 1391, 1426, 2747, 2748
AsuC2I	CCSGG	3 cut(s)	454, 722, 1564
AsuHPI	GGTGA	6 cut(s)	59, 202, 542, 610, 2113, 2984
AvaI	CYCGRG	3 cut(s)	34, 55, 342
AvaII	GGWCC	3 cut(s)	606, 1381, 1426
AxyI	CCTNAGG	2 cut(s)	263, 2352
BaeGI	GKGCMC	3 cut(s)	63, 2671, 2751
BaeI	ACNNNNGTAYC	2 cut(s)	1558, 1591
BamHI	GGATCC	1 cut(s)	964
BanI	GGYRCC	1 cut(s)	1606
BanII	GRGCYC	5 cut(s)	63, 1139, 2142, 2751, 2812
BbrPI	CACGTG	1 cut(s)	2672
BbsI	GAAGAC	2 cut(s)	120, 306
Bbv12I	GWGCWC	6 cut(s)	717, 731, 1139, 1413, 2142, 2671
BbvCI	CCTCAGC	1 cut(s)	2124
BbvI	GCAGC	3 cut(s)	367, 1891, 2485
BceAI	ACGGC	2 cut(s)	1754, 2976
BciT130I	CCWGG	3 cut(s)	442, 1011, 1614
BciVI	GTATCC	1 cut(s)	2031
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	3 cut(s)	454, 722, 1564
BcoDI	GTCTC	4 cut(s)	58, 227, 320, 659
BcuI	ACTAGT	1 cut(s)	611
BfmI	CTRYAG	2 cut(s)	1414, 1875
BfrI	CTTAAG	2 cut(s)	2717, 2924
BfuAI	ACCTGC	2 cut(s)	477, 2467
BfuI	GTATCC	1 cut(s)	2031
BisI	GCNGC	4 cut(s)	356, 582, 1905, 2474
BlsI	GCNGC	4 cut(s)	357, 583, 1906, 2475
Bme1390I	CCNGG	6 cut(s)	442, 454, 722, 1011, 1564, 1614
Bme18I	GGWCC	3 cut(s)	606, 1381, 1426
BmeT110I	CYCGRG	3 cut(s)	34, 55, 342
BmgBI	CACGTC	1 cut(s)	312
BmgT120I	GGNCC	8 cut(s)	59, 60, 606, 1381, 1391, 1426, 2747, 2748
BmiI	GGNNCC	9 cut(s)	60, 61, 966, 1159, 1323, 1382, 1608, 2749, 2811
BmrFI	CCNGG	6 cut(s)	442, 454, 722, 1011, 1564, 1614
BmrI	ACTGGG	1 cut(s)	1938
BmsI	GCATC	8 cut(s)	265, 376, 1255, 1914, 1963, 1978, 2414, 2473
BmuI	ACTGGG	1 cut(s)	1938
BpiI	GAAGAC	2 cut(s)	120, 306
BplI	GAGNNNNNCTC	2 cut(s)	2797, 2829
BpmI	CTGGAG	3 cut(s)	1389, 1785, 2748
Bpu10I	CCTNAGC	1 cut(s)	2124
BpuEI	CTTGAG	1 cut(s)	1800
BpuMI	CCSGG	3 cut(s)	454, 722, 1564
BsaAI	YACGTR	2 cut(s)	1469, 2672
BsaJI	CCNNGG	6 cut(s)	177, 1384, 1613, 2580, 2940, 2967
BsaWI	WCCGGW	1 cut(s)	2802
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bse1I	ACTGG	4 cut(s)	318, 359, 1837, 1944
Bse21I	CCTNAGG	2 cut(s)	263, 2352
Bse3DI	GCAATG	6 cut(s)	430, 796, 1188, 1439, 1937, 2466
BseAI	TCCGGA	1 cut(s)	2802
BseBI	CCWGG	3 cut(s)	442, 1011, 1614
BseDI	CCNNGG	6 cut(s)	177, 1384, 1613, 2580, 2940, 2967
BseGI	GGATG	9 cut(s)	337, 904, 1270, 1884, 1929, 2364, 2405, 2542, 2731
BseMI	GCAATG	6 cut(s)	430, 796, 1188, 1439, 1937, 2466
BseMII	CTCAG	9 cut(s)	702, 1152, 1266, 2106, 2115, 2385, 2541, 2696, 2705
BseNI	ACTGG	4 cut(s)	318, 359, 1837, 1944
BseRI	GAGGAG	6 cut(s)	227, 533, 1212, 2150, 2802, 3048
BseSI	GKGCMC	3 cut(s)	63, 2671, 2751
BseXI	GCAGC	3 cut(s)	367, 1891, 2485
BsgI	GTGCAG	2 cut(s)	591, 2148
Bsh1236I	CGCG	3 cut(s)	463, 2315, 2698
BshFI	GGCC	5 cut(s)	61, 584, 1393, 2221, 2749
BshNI	GGYRCC	1 cut(s)	1606
BsiHKAI	GWGCWC	6 cut(s)	717, 731, 1139, 1413, 2142, 2671
BsiHKCI	CYCGRG	3 cut(s)	34, 55, 342
BsiSI	CCGG	4 cut(s)	454, 721, 1563, 2803
BslFI	GGGAC	3 cut(s)	436, 1394, 2554
BsmAI	GTCTC	4 cut(s)	58, 227, 320, 659
BsmBI	CGTCTC	3 cut(s)	58, 320, 659
BsmFI	GGGAC	3 cut(s)	436, 1394, 2554
BsmI	GAATGC	2 cut(s)	2125, 2305
BsnI	GGCC	5 cut(s)	61, 584, 1393, 2221, 2749
BsoBI	CYCGRG	3 cut(s)	34, 55, 342
Bsp120I	GGGCCC	2 cut(s)	59, 2747
Bsp1286I	GDGCHC	9 cut(s)	63, 717, 731, 1139, 1413, 2142, 2671, 2751, 2812
Bsp13I	TCCGGA	1 cut(s)	2802
Bsp143I	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
BspACI	CCGC	7 cut(s)	8, 463, 581, 718, 830, 2315, 2989
BspANI	GGCC	5 cut(s)	61, 584, 1393, 2221, 2749
BspCNI	CTCAG	9 cut(s)	703, 1151, 1267, 2107, 2116, 2386, 2540, 2695, 2704
BspEI	TCCGGA	1 cut(s)	2802
BspFNI	CGCG	3 cut(s)	463, 2315, 2698
BspHI	TCATGA	2 cut(s)	1174, 2815
BspLI	GGNNCC	9 cut(s)	60, 61, 966, 1159, 1323, 1382, 1608, 2749, 2811
BspMI	ACCTGC	2 cut(s)	477, 2467
BspPI	GGATC	5 cut(s)	788, 959, 972, 1989, 2168
BspT107I	GGYRCC	1 cut(s)	1606
BspTI	CTTAAG	2 cut(s)	2717, 2924
BsrDI	GCAATG	6 cut(s)	430, 796, 1188, 1439, 1937, 2466
BsrI	ACTGG	4 cut(s)	318, 359, 1837, 1944
BssECI	CCNNGG	6 cut(s)	177, 1384, 1613, 2580, 2940, 2967
BssMI	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
BssNAI	GTATAC	1 cut(s)	46
BssT1I	CCWWGG	5 cut(s)	177, 1384, 2580, 2940, 2967
Bst1107I	GTATAC	1 cut(s)	46
Bst2UI	CCWGG	3 cut(s)	442, 1011, 1614
Bst4CI	ACNGT	8 cut(s)	52, 511, 1088, 1121, 1415, 1879, 2091, 2437
Bst6I	CTCTTC	1 cut(s)	1564
BstAFI	CTTAAG	2 cut(s)	2717, 2924
BstAPI	GCANNNNNTGC	2 cut(s)	578, 1238
BstBAI	YACGTR	2 cut(s)	1469, 2672
BstC8I	GCNNGC	4 cut(s)	570, 1063, 1395, 2833
BstENI	CCTNNNNNAGG	4 cut(s)	266, 593, 2166, 2720
BstF5I	GGATG	9 cut(s)	337, 904, 1270, 1884, 1929, 2364, 2405, 2542, 2731
BstFNI	CGCG	3 cut(s)	463, 2315, 2698
BstHHI	GCGC	1 cut(s)	2315
BstKTI	GATC	6 cut(s)	409, 796, 967, 1984, 2176, 2526
BstMAI	GTCTC	4 cut(s)	58, 227, 320, 659
BstMBI	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
BstMWI	GCNNNNNNNGC	6 cut(s)	578, 726, 836, 1238, 2120, 2470
BstNI	CCWGG	3 cut(s)	442, 1011, 1614
BstNSI	RCATGY	5 cut(s)	232, 1241, 1545, 2835, 3043
BstSCI	CCNGG	6 cut(s)	440, 452, 720, 1009, 1562, 1612
BstSFI	CTRYAG	2 cut(s)	1414, 1875
BstSLI	GKGCMC	3 cut(s)	63, 2671, 2751
BstUI	CGCG	3 cut(s)	463, 2315, 2698
BstV1I	GCAGC	3 cut(s)	367, 1891, 2485
BstV2I	GAAGAC	2 cut(s)	120, 306
BstX2I	RGATCY	3 cut(s)	964, 1981, 2173
BstXI	CCANNNNNNTGG	2 cut(s)	592, 1603
BstYI	RGATCY	3 cut(s)	964, 1981, 2173
BstZ17I	GTATAC	1 cut(s)	46
Bsu36I	CCTNAGG	2 cut(s)	263, 2352
BsuI	GTATCC	1 cut(s)	2031
BsuRI	GGCC	5 cut(s)	61, 584, 1393, 2221, 2749
BtrI	CACGTC	1 cut(s)	312
BtsCI	GGATG	9 cut(s)	337, 904, 1270, 1884, 1929, 2364, 2405, 2542, 2731
BtsIMutI	CAGTG	6 cut(s)	325, 366, 1093, 1411, 1587, 1651
BveI	ACCTGC	2 cut(s)	477, 2467
Cac8I	GCNNGC	4 cut(s)	570, 1063, 1395, 2833
CciI	TCATGA	2 cut(s)	1174, 2815
CfoI	GCGC	1 cut(s)	2315
Cfr13I	GGNCC	8 cut(s)	59, 60, 606, 1381, 1391, 1426, 2747, 2748
CseI	GACGC	3 cut(s)	2120, 2704, 3008
Csp6I	GTAC	5 cut(s)	1055, 1235, 1567, 1776, 2130
CspCI	CAANNNNNGTGG	2 cut(s)	598, 633
CviQI	GTAC	5 cut(s)	1055, 1235, 1567, 1776, 2130
DpnI	GATC	6 cut(s)	408, 795, 966, 1983, 2175, 2525
DpnII	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
DraI	TTTAAA	2 cut(s)	858, 1525
DraIII	CACNNNGTG	1 cut(s)	1706
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	1 cut(s)	1564
EarI	CTCTTC	1 cut(s)	1564
Ecl136II	GAGCTC	2 cut(s)	1137, 2140
Eco130I	CCWWGG	5 cut(s)	177, 1384, 2580, 2940, 2967
Eco24I	GRGCYC	5 cut(s)	63, 1139, 2142, 2751, 2812
Eco32I	GATATC	2 cut(s)	1537, 2845
Eco47I	GGWCC	3 cut(s)	606, 1381, 1426
Eco53kI	GAGCTC	2 cut(s)	1137, 2140
Eco57I	CTGAAG	5 cut(s)	1248, 1611, 1880, 2289, 2310
Eco72I	CACGTG	1 cut(s)	2672
Eco81I	CCTNAGG	2 cut(s)	263, 2352
Eco88I	CYCGRG	3 cut(s)	34, 55, 342
EcoICRI	GAGCTC	2 cut(s)	1137, 2140
EcoNI	CCTNNNNNAGG	4 cut(s)	266, 593, 2166, 2720
EcoO109I	RGGNCCY	3 cut(s)	59, 60, 1381
EcoRI	GAATTC	2 cut(s)	2819, 2912
EcoRII	CCWGG	3 cut(s)	440, 1009, 1612
EcoRV	GATATC	2 cut(s)	1537, 2845
EcoT14I	CCWWGG	5 cut(s)	177, 1384, 2580, 2940, 2967
EcoT22I	ATGCAT	1 cut(s)	1441
EcoT38I	GRGCYC	5 cut(s)	63, 1139, 2142, 2751, 2812
ErhI	CCWWGG	5 cut(s)	177, 1384, 2580, 2940, 2967
Esp3I	CGTCTC	3 cut(s)	58, 320, 659
FaqI	GGGAC	3 cut(s)	436, 1394, 2554
FauI	CCCGC	1 cut(s)	456
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	2 cut(s)	45, 1881
Fnu4HI	GCNGC	4 cut(s)	356, 582, 1905, 2474
FokI	GGATG	9 cut(s)	344, 911, 1277, 1871, 1936, 2371, 2392, 2549, 2738
FriOI	GRGCYC	5 cut(s)	63, 1139, 2142, 2751, 2812
Fsp4HI	GCNGC	4 cut(s)	356, 582, 1905, 2474
GlaI	GCGC	1 cut(s)	2314
GluI	GCNGC	4 cut(s)	356, 582, 1905, 2474
GsuI	CTGGAG	3 cut(s)	1389, 1785, 2748
HaeIII	GGCC	5 cut(s)	61, 584, 1393, 2221, 2749
HapII	CCGG	4 cut(s)	454, 721, 1563, 2803
HgaI	GACGC	3 cut(s)	2120, 2704, 3008
HhaI	GCGC	1 cut(s)	2315
Hin6I	GCGC	1 cut(s)	2313
HinP1I	GCGC	1 cut(s)	2313
HincII	GTYRAC	3 cut(s)	514, 1882, 2998
HindII	GTYRAC	3 cut(s)	514, 1882, 2998
HpaII	CCGG	4 cut(s)	454, 721, 1563, 2803
HphI	GGTGA	6 cut(s)	59, 202, 542, 610, 2113, 2984
Hpy166II	GTNNAC	9 cut(s)	46, 193, 514, 609, 1856, 1882, 2669, 2986, 2998
Hpy8I	GTNNAC	9 cut(s)	46, 193, 514, 609, 1856, 1882, 2669, 2986, 2998
HpyCH4III	ACNGT	8 cut(s)	52, 511, 1088, 1121, 1415, 1879, 2091, 2437
HpyCH4IV	ACGT	3 cut(s)	311, 1468, 2671
HpyF10VI	GCNNNNNNNGC	6 cut(s)	578, 726, 836, 1238, 2120, 2470
HpySE526I	ACGT	3 cut(s)	311, 1468, 2671
HspAI	GCGC	1 cut(s)	2313
Kpn2I	TCCGGA	1 cut(s)	2802
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
LmnI	GCTCC	9 cut(s)	24, 80, 117, 565, 1327, 1408, 1996, 2137, 2815
Lsp1109I	GCAGC	3 cut(s)	367, 1891, 2485
LweI	GCATC	8 cut(s)	265, 376, 1255, 1914, 1963, 1978, 2414, 2473
MaeII	ACGT	3 cut(s)	311, 1468, 2671
MaeIII	GTNAC	9 cut(s)	530, 1464, 1646, 2091, 2191, 2333, 2437, 2598, 2611
MalI	GATC	6 cut(s)	408, 795, 966, 1983, 2175, 2525
MboI	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
MflI	RGATCY	3 cut(s)	964, 1981, 2173
MhlI	GDGCHC	9 cut(s)	63, 717, 731, 1139, 1413, 2142, 2671, 2751, 2812
MlyI	GAGTC	6 cut(s)	299, 911, 1472, 1643, 1697, 2006
MmeI	TCCRAC	4 cut(s)	1006, 2055, 2411, 2911
Mph1103I	ATGCAT	1 cut(s)	1441
MroI	TCCGGA	1 cut(s)	2802
MroXI	GAANNNNTTC	2 cut(s)	999, 2242
MslI	CAYNNNNRTG	3 cut(s)	1221, 1434, 1601
MspCI	CTTAAG	2 cut(s)	2717, 2924
MspI	CCGG	4 cut(s)	454, 721, 1563, 2803
MspR9I	CCNGG	6 cut(s)	442, 454, 722, 1011, 1564, 1614
MssI	GTTTAAAC	1 cut(s)	858
Mva1269I	GAATGC	2 cut(s)	2125, 2305
MvaI	CCWGG	3 cut(s)	442, 1011, 1614
MvnI	CGCG	3 cut(s)	463, 2315, 2698
MwoI	GCNNNNNNNGC	6 cut(s)	578, 726, 836, 1238, 2120, 2470
NciI	CCSGG	3 cut(s)	454, 722, 1564
NdeII	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
NlaIV	GGNNCC	9 cut(s)	60, 61, 966, 1159, 1323, 1382, 1608, 2749, 2811
NmuCI	GTSAC	5 cut(s)	530, 1464, 1646, 2598, 2611
NsiI	ATGCAT	1 cut(s)	1441
NspI	RCATGY	5 cut(s)	232, 1241, 1545, 2835, 3043
OliI	CACNNNNGTG	1 cut(s)	1601
PaeI	GCATGC	1 cut(s)	2835
PaeR7I	CTCGAG	2 cut(s)	34, 342
PagI	TCATGA	2 cut(s)	1174, 2815
PciI	ACATGT	2 cut(s)	228, 1541
PctI	GAATGC	2 cut(s)	2125, 2305
PdmI	GAANNNNTTC	2 cut(s)	999, 2242
PfeI	GAWTC	7 cut(s)	557, 1106, 1448, 1787, 1934, 2413, 2934
PflFI	GACNNNGTC	1 cut(s)	448
PflMI	CCANNNNNTGG	3 cut(s)	1010, 1950, 2008
PfoI	TCCNGGA	3 cut(s)	440, 452, 1009
PkrI	GCNGC	4 cut(s)	357, 583, 1906, 2475
PleI	GAGTC	6 cut(s)	298, 910, 1471, 1643, 1696, 2006
PmaCI	CACGTG	1 cut(s)	2672
PmeI	GTTTAAAC	1 cut(s)	858
PmlI	CACGTG	1 cut(s)	2672
PpsI	GAGTC	6 cut(s)	298, 910, 1471, 1643, 1696, 2006
Ppu21I	YACGTR	2 cut(s)	1469, 2672
PpuMI	RGGWCCY	1 cut(s)	1381
PscI	ACATGT	2 cut(s)	228, 1541
PshBI	ATTAAT	2 cut(s)	1434, 2961
Psp124BI	GAGCTC	2 cut(s)	1139, 2142
Psp5II	RGGWCCY	1 cut(s)	1381
Psp6I	CCWGG	3 cut(s)	440, 1009, 1612
PspCI	CACGTG	1 cut(s)	2672
PspGI	CCWGG	3 cut(s)	440, 1009, 1612
PspN4I	GGNNCC	9 cut(s)	60, 61, 966, 1159, 1323, 1382, 1608, 2749, 2811
PspOMI	GGGCCC	2 cut(s)	59, 2747
PspPI	GGNCC	8 cut(s)	59, 60, 606, 1381, 1391, 1426, 2747, 2748
PspPPI	RGGWCCY	1 cut(s)	1381
PsuI	RGATCY	3 cut(s)	964, 1981, 2173
PsyI	GACNNNGTC	1 cut(s)	448
RsaI	GTAC	5 cut(s)	1056, 1236, 1568, 1777, 2131
RsaNI	GTAC	5 cut(s)	1055, 1235, 1567, 1776, 2130
RseI	CAYNNNNRTG	3 cut(s)	1221, 1434, 1601
SacI	GAGCTC	2 cut(s)	1139, 2142
SalI	GTCGAC	1 cut(s)	1880
SatI	GCNGC	4 cut(s)	356, 582, 1905, 2474
Sau3AI	GATC	6 cut(s)	406, 793, 964, 1981, 2173, 2523
Sau96I	GGNCC	8 cut(s)	59, 60, 606, 1381, 1391, 1426, 2747, 2748
SchI	GAGTC	6 cut(s)	299, 911, 1472, 1643, 1697, 2006
ScrFI	CCNGG	6 cut(s)	442, 454, 722, 1011, 1564, 1614
SduI	GDGCHC	9 cut(s)	63, 717, 731, 1139, 1413, 2142, 2671, 2751, 2812
SfaNI	GCATC	8 cut(s)	265, 376, 1255, 1914, 1963, 1978, 2414, 2473
SfcI	CTRYAG	2 cut(s)	1414, 1875
Sfr274I	CTCGAG	2 cut(s)	34, 342
SinI	GGWCC	3 cut(s)	606, 1381, 1426
SlaI	CTCGAG	2 cut(s)	34, 342
SmiMI	CAYNNNNRTG	3 cut(s)	1221, 1434, 1601
SmlI	CTYRAG	5 cut(s)	34, 342, 1815, 2717, 2924
SmoI	CTYRAG	5 cut(s)	34, 342, 1815, 2717, 2924
SpeI	ACTAGT	1 cut(s)	611
SphI	GCATGC	1 cut(s)	2835
SsiI	CCGC	7 cut(s)	8, 463, 581, 718, 830, 2315, 2989
SstI	GAGCTC	2 cut(s)	1139, 2142
StyD4I	CCNGG	6 cut(s)	440, 452, 720, 1009, 1562, 1612
StyI	CCWWGG	5 cut(s)	177, 1384, 2580, 2940, 2967
TaaI	ACNGT	8 cut(s)	52, 511, 1088, 1121, 1415, 1879, 2091, 2437
TaiI	ACGT	3 cut(s)	314, 1471, 2674
TaqI	TCGA	3 cut(s)	35, 343, 1881
TatI	WGTACW	3 cut(s)	1054, 1234, 1775
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	7 cut(s)	557, 1106, 1448, 1787, 1934, 2413, 2934
TscAI	CASTG	6 cut(s)	325, 366, 1093, 1418, 1594, 1651
TseFI	GTSAC	5 cut(s)	530, 1464, 1646, 2598, 2611
TseI	GCWGC	3 cut(s)	355, 1904, 2473
Tsp45I	GTSAC	5 cut(s)	530, 1464, 1646, 2598, 2611
TspGWI	ACGGA	2 cut(s)	344, 2216
TspRI	CASTG	6 cut(s)	325, 366, 1093, 1418, 1594, 1651
Tth111I	GACNNNGTC	1 cut(s)	448
Van91I	CCANNNNNTGG	3 cut(s)	1010, 1950, 2008
Vha464I	CTTAAG	2 cut(s)	2717, 2924
VneI	GTGCAC	1 cut(s)	2667
VpaK11BI	GGWCC	3 cut(s)	606, 1381, 1426
VspI	ATTAAT	2 cut(s)	1434, 2961
XagI	CCTNNNNNAGG	4 cut(s)	266, 593, 2166, 2720
XapI	RAATTY	7 cut(s)	1520, 1754, 2242, 2490, 2819, 2912, 3090
XbaI	TCTAGA	1 cut(s)	878
XceI	RCATGY	5 cut(s)	232, 1241, 1545, 2835, 3043
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XhoI	CTCGAG	2 cut(s)	34, 342
XmiI	GTMKAC	2 cut(s)	45, 1881
XmnI	GAANNNNTTC	2 cut(s)	999, 2242
Zsp2I	ATGCAT	1 cut(s)	1441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.