RLG00000011170

iq-domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
7307456 .. 7311474
4019 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011170

Sequence Viewer

Length: 1821 bp
ATGGGGAAATCTAACTCCTGCTTCAAAATTATCACATGCGGCAACGATTCAGAGGACAAAGACGATCTCGAAGCTTCTGAGAGCAAGGGTTCAGGTGACAAACGTGGCTGGAGTTTCCGTAAGAGGTCTGCACGGCATCGAGTGCTAAGCAACACTGTGATCACCGAAACCCCCACTTCAGAGAATAAGGAGAGCCCAGAATCTGCCCCTCTTACTTTCCAATCACCAGCTAGCACGACTGTTCCAGAGAAATTATCTGTAATACAATGCACCGATGAGAAACCACAGTTGGCGACTCCTGAGAACCCAAAAGTTTCTACAACTGAAGATGCCTCCGAAGATCAAAGCAAGGTTGAGGACAAACTGGACGAGTCTGCTGTTGTTGTTGTCCAGACTGCTGTCAGAGGATTGTTGGCTCAAAGATCATTGCTGGAGCTGAAAAATGTAGTCAAGTTGCAAGCTGCTGTCCGTGGCCATTTGGTGCGTAGGCATGCTGTTGGAACTTTGCGTTGTGTTCAAGCCATTGTCAAAATGCAAGCTCTTGTTCGTGCTCGTCAATCTCTTCAGAAGGAAAACCATAGTTCAAAAACCTCGAAGAAGGCAAATGTAACCTACATTTCCATTGAAAAGCTACTTAGCAATAGCTTTGCCCGCCAGCTCTTAGAATCAACACCGAAGAACCAACCTATTCATGTTAAGTGTGATCCTTCTAAGCCTGATTCTGCTTGGAAATGGTTGGAAATGTGGATGTCAGTCTCAACGAAGGATACTCCACATTTAAACGAGGCAGTAGCAGTGGTAGAGCAACAGGAAACAGAAAAGGAAGAAATTCCCGAGTCTCCACGTGAATCTAAAACTCAATATTGTGAGATGGATGAATCAAATTCCAGCATAAGGGAGATTGCGCTTTCTGAAAGTGAAGAAAGTCTGATTACTTATGATGCCGACAACTTGAACTTTCAGGCAAGCTATTCTACCTCTCATACAGTGAGAGACAATAATGAGCAGCCTCAGTTGGAGAACACCACTACATCTGCTGTGAAAGAGTCCCCAGTAGAAATAAATCTATCAGATGCAGATTGTAACATGGAGTTCAAAGCTTTATCTGGGAAACCTTCAAAATTTGCAGAGCTGACTTCAACAACCAATTCAGCTAGGTCGATCAGTTCATCTCCTCAAGATGTTTCTGGAGTTGAACCACAAAGGGACACATTCTCATCTGAGGTGGATACTGAAGTCAGAGCAAAGGAGCTAAGTGTAGCAGAGAATCCAATCCCCCATGGATCACAAGTTCAAGTGGGTGGTTCTGAGTGTGGCACCGAAATCTCTATTTCTTCCACTCTTGATTCGCCTGATAGATCTGATATTGGAGCCATGGAGCGTGACCATGACCATGATGCGAAAGTTTCGGAGGAAAGGATTTGCAGTCCAAAAAATACAAGAGACATTGATGTTGAAACTACGGATTTCCTGGAAACCCCAGTCTCCAACTTATGTAACGCTGTTGCAGAACCAGAGAAAATTGGTGCTGTCAATGGTGAAACCATAAATTCTGAGGCTGATCAAGAACCAAGAGATAGCAGCAGCAGTAGTTCTATTCCTCATTTCATGCAAGCCACAGAGTCTGCTAGAGCAAAGCTTCAAGCAACTGCCTCTCCCAGATCGAGTCCAGATGTGCAAGACAGGGAGATTTACATCAAGAAGAGACATTCCTTACCTGGTGTGAATGGAAGGCAGGGATCTCCTCGAGTCCAGCGGTCCATGTCTCAGGCTCAGACACAGCAGGGTGCAAAGGGCACCGAGAGAAAATGGCAGAGGTGA

Protein Analysis

607

Amino Acids

66.66

Weight (kDa)

5.26

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 520 - 594 6.4e-09 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011221)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1316, 1796
AciI CCGC 3 cut(s) 39, 652, 1756
AclWI GGATC 3 cut(s) 698, 1291, 1747
AcoI YGGCCR 1 cut(s) 472
AcsI RAATTY 4 cut(s) 828, 883, 1121, 1549
AcuI CTGAAG 4 cut(s) 162, 345, 548, 1254
AcvI CACGTG 1 cut(s) 845
AfiI CCNNNNNNNGG 1 cut(s) 894
AjnI CCWGG 2 cut(s) 1470, 1717
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AloI GAACNNNNNNTCC 2 cut(s) 1275, 1307
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 7 cut(s) 760, 843, 987, 1437, 1489, 1699, 1770
AlwI GGATC 3 cut(s) 698, 1291, 1747
AlwNI CAGNNNCTG 2 cut(s) 203, 1625
Ama87I CYCGRG 2 cut(s) 833, 1746
AoxI GGCC 1 cut(s) 472
ApeKI GCWGC 4 cut(s) 461, 1006, 1581, 1584
ApoI RAATTY 4 cut(s) 828, 883, 1121, 1549
Asp700I GAANNNNTTC 1 cut(s) 828
AspLEI GCGC 1 cut(s) 907
AspS9I GGNCC 1 cut(s) 1758
AsuHPI GGTGA 4 cut(s) 107, 154, 216, 1550
AsuNHI GCTAGC 1 cut(s) 230
AvaI CYCGRG 2 cut(s) 833, 1746
AvaII GGWCC 1 cut(s) 1758
BaeGI GKGCMC 1 cut(s) 1799
BaeI ACNNNNGTAYC 2 cut(s) 1221, 1254
BalI TGGCCA 1 cut(s) 474
BanI GGYRCC 2 cut(s) 1316, 1796
BanII GRGCYC 1 cut(s) 197
BbrPI CACGTG 1 cut(s) 845
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 4 cut(s) 448, 1018, 1593, 1596
BccI CCATC 1 cut(s) 865
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 2 cut(s) 1472, 1719
BciVI GTATCC 2 cut(s) 760, 1222
BclI TGATCA 2 cut(s) 159, 1561
BcoDI GTCTC 7 cut(s) 760, 843, 987, 1437, 1489, 1699, 1770
BfaI CTAG 3 cut(s) 231, 1155, 1629
BfuI GTATCC 2 cut(s) 760, 1222
BglII AGATCT 1 cut(s) 1358
BisI GCNGC 5 cut(s) 40, 462, 1007, 1582, 1585
BlpI GCTNAGC 1 cut(s) 146
BlsI GCNGC 5 cut(s) 41, 463, 1008, 1583, 1586
Bme1390I CCNGG 2 cut(s) 1472, 1719
Bme18I GGWCC 1 cut(s) 1758
BmeT110I CYCGRG 2 cut(s) 833, 1746
BmgT120I GGNCC 1 cut(s) 1758
BmiI GGNNCC 3 cut(s) 1318, 1372, 1798
BmrFI CCNGG 2 cut(s) 1472, 1719
BmrI ACTGGG 2 cut(s) 1046, 1475
BmsI GCATC 5 cut(s) 145, 319, 931, 1063, 1387
BmtI GCTAGC 1 cut(s) 234
BmuI ACTGGG 2 cut(s) 1046, 1475
BoxI GACNNNNGTC 1 cut(s) 398
BpmI CTGGAG 3 cut(s) 130, 452, 1209
Bpu1102I GCTNAGC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 1161
BsaAI YACGTR 1 cut(s) 845
BsaBI GATNNNNATC 1 cut(s) 1694
BsaJI CCNNGG 3 cut(s) 469, 1279, 1374
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 1639, 1669
Bsc4I CCNNNNNNNGG 1 cut(s) 894
Bse1I ACTGG 3 cut(s) 369, 1052, 1481
Bse3DI GCAATG 1 cut(s) 425
Bse8I GATNNNNATC 1 cut(s) 1694
BseBI CCWGG 2 cut(s) 1472, 1719
BseDI CCNNGG 3 cut(s) 469, 1279, 1374
BseGI GGATG 2 cut(s) 753, 880
BseJI GATNNNNATC 1 cut(s) 1694
BseLI CCNNNNNNNGG 1 cut(s) 894
BseMI GCAATG 1 cut(s) 425
BseMII CTCAG 8 cut(s) 69, 291, 1025, 1212, 1299, 1545, 1781, 1787
BseNI ACTGG 3 cut(s) 369, 1052, 1481
BseRI GAGGAG 2 cut(s) 1164, 1734
BseSI GKGCMC 1 cut(s) 1799
BseXI GCAGC 4 cut(s) 448, 1018, 1593, 1596
BsgI GTGCAG 1 cut(s) 114
BshFI GGCC 1 cut(s) 474
BshNI GGYRCC 2 cut(s) 1316, 1796
BsiHKAI GWGCWC 1 cut(s) 553
BsiHKCI CYCGRG 2 cut(s) 833, 1746
BslFI GGGAC 2 cut(s) 1033, 1220
BslI CCNNNNNNNGG 1 cut(s) 894
BsmAI GTCTC 7 cut(s) 760, 843, 987, 1437, 1489, 1699, 1770
BsmFI GGGAC 2 cut(s) 1033, 1220
BsnI GGCC 1 cut(s) 474
BsoBI CYCGRG 2 cut(s) 833, 1746
Bsp1286I GDGCHC 3 cut(s) 197, 553, 1799
Bsp1720I GCTNAGC 1 cut(s) 146
Bsp19I CCATGG 2 cut(s) 1279, 1374
BspACI CCGC 3 cut(s) 39, 652, 1756
BspANI GGCC 1 cut(s) 474
BspCNI CTCAG 8 cut(s) 70, 292, 1024, 1213, 1300, 1546, 1780, 1786
BspLI GGNNCC 3 cut(s) 1318, 1372, 1798
BspOI GCTAGC 1 cut(s) 234
BspPI GGATC 3 cut(s) 698, 1291, 1747
BspT107I GGYRCC 2 cut(s) 1316, 1796
BsrDI GCAATG 1 cut(s) 425
BsrI ACTGG 3 cut(s) 369, 1052, 1481
BssECI CCNNGG 3 cut(s) 469, 1279, 1374
BssT1I CCWWGG 2 cut(s) 1279, 1374
Bst2UI CCWGG 2 cut(s) 1472, 1719
Bst4CI ACNGT 4 cut(s) 157, 241, 288, 988
Bst6I CTCTTC 2 cut(s) 567, 1697
BstAPI GCANNNNNTGC 1 cut(s) 142
BstBAI YACGTR 1 cut(s) 845
BstC8I GCNNGC 8 cut(s) 232, 459, 492, 537, 652, 656, 967, 1614
BstDSI CCRYGG 3 cut(s) 469, 1279, 1374
BstF5I GGATG 2 cut(s) 753, 880
BstHHI GCGC 1 cut(s) 907
BstMAI GTCTC 7 cut(s) 760, 843, 987, 1437, 1489, 1699, 1770
BstMWI GCNNNNNNNGC 2 cut(s) 142, 651
BstNI CCWGG 2 cut(s) 1472, 1719
BstNSI RCATGY 2 cut(s) 39, 494
BstPAI GACNNNNGTC 1 cut(s) 398
BstSCI CCNGG 2 cut(s) 1470, 1717
BstSLI GKGCMC 1 cut(s) 1799
BstV1I GCAGC 4 cut(s) 448, 1018, 1593, 1596
BstX2I RGATCY 2 cut(s) 1358, 1739
BstYI RGATCY 2 cut(s) 1358, 1739
BsuI GTATCC 2 cut(s) 760, 1222
BsuRI GGCC 1 cut(s) 474
BtgI CCRYGG 3 cut(s) 469, 1279, 1374
BtsCI GGATG 2 cut(s) 753, 880
BtsI GCAGTG 1 cut(s) 801
BtsIMutI CAGTG 3 cut(s) 153, 801, 993
Cac8I GCNNGC 8 cut(s) 232, 459, 492, 537, 652, 656, 967, 1614
CaiI CAGNNNCTG 2 cut(s) 203, 1625
CfoI GCGC 1 cut(s) 907
Cfr13I GGNCC 1 cut(s) 1758
CsiI ACCWGGT 1 cut(s) 1717
DraI TTTAAA 1 cut(s) 780
EaeI YGGCCR 1 cut(s) 472
Eam1104I CTCTTC 2 cut(s) 567, 1697
EarI CTCTTC 2 cut(s) 567, 1697
Eco130I CCWWGG 2 cut(s) 1279, 1374
Eco24I GRGCYC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 1758
Eco57I CTGAAG 4 cut(s) 162, 345, 548, 1254
Eco72I CACGTG 1 cut(s) 845
Eco88I CYCGRG 2 cut(s) 833, 1746
EcoRII CCWGG 2 cut(s) 1470, 1717
EcoT14I CCWWGG 2 cut(s) 1279, 1374
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 2 cut(s) 1279, 1374
FaqI GGGAC 2 cut(s) 1033, 1220
FauI CCCGC 1 cut(s) 659
FbaI TGATCA 2 cut(s) 159, 1561
Fnu4HI GCNGC 5 cut(s) 40, 462, 1007, 1582, 1585
FokI GGATG 2 cut(s) 760, 887
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 5 cut(s) 40, 462, 1007, 1582, 1585
FspBI CTAG 3 cut(s) 231, 1155, 1629
GlaI GCGC 1 cut(s) 906
GluI GCNGC 5 cut(s) 40, 462, 1007, 1582, 1585
GsuI CTGGAG 3 cut(s) 130, 452, 1209
HaeIII GGCC 1 cut(s) 474
HhaI GCGC 1 cut(s) 907
Hin6I GCGC 1 cut(s) 905
HinP1I GCGC 1 cut(s) 905
HindIII AAGCTT 3 cut(s) 72, 1098, 1637
HphI GGTGA 4 cut(s) 107, 154, 216, 1550
HpyAV CCTTC 6 cut(s) 562, 592, 717, 757, 1125, 1725
HpyCH4III ACNGT 4 cut(s) 157, 241, 288, 988
HpyCH4IV ACGT 2 cut(s) 103, 844
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 651
HpySE526I ACGT 2 cut(s) 103, 844
HspAI GCGC 1 cut(s) 905
Ksp22I TGATCA 2 cut(s) 159, 1561
LmnI GCTCC 4 cut(s) 433, 1249, 1370, 1378
Lsp1109I GCAGC 4 cut(s) 448, 1018, 1593, 1596
LweI GCATC 5 cut(s) 145, 319, 931, 1063, 1387
MabI ACCWGGT 1 cut(s) 1717
MaeI CTAG 3 cut(s) 231, 1155, 1629
MaeII ACGT 2 cut(s) 103, 844
MaeIII GTNAC 5 cut(s) 95, 607, 1082, 1382, 1496
MboII GAAGA 9 cut(s) 338, 350, 554, 607, 688, 836, 932, 1326, 1714
MflI RGATCY 2 cut(s) 1358, 1739
MhlI GDGCHC 3 cut(s) 197, 553, 1799
MlsI TGGCCA 1 cut(s) 474
MluCI AATT 8 cut(s) 27, 251, 828, 883, 1121, 1147, 1521, 1549
MluNI TGGCCA 1 cut(s) 474
MlyI GAGTC 7 cut(s) 289, 380, 845, 1055, 1631, 1675, 1758
MmeI TCCRAC 4 cut(s) 478, 717, 996, 1512
Mox20I TGGCCA 1 cut(s) 474
MroXI GAANNNNTTC 1 cut(s) 828
MscI TGGCCA 1 cut(s) 474
MseI TTAA 2 cut(s) 696, 779
MslI CAYNNNNRTG 1 cut(s) 1392
Msp20I TGGCCA 1 cut(s) 474
MspA1I CMGCKG 1 cut(s) 1756
MspR9I CCNGG 2 cut(s) 1472, 1719
MvaI CCWGG 2 cut(s) 1472, 1719
MwoI GCNNNNNNNGC 2 cut(s) 142, 651
NcoI CCATGG 2 cut(s) 1279, 1374
NheI GCTAGC 1 cut(s) 230
NlaIV GGNNCC 3 cut(s) 1318, 1372, 1798
NmuCI GTSAC 2 cut(s) 95, 1382
NspI RCATGY 2 cut(s) 39, 494
PaeI GCATGC 1 cut(s) 494
PaeR7I CTCGAG 1 cut(s) 1746
PdmI GAANNNNTTC 1 cut(s) 828
PfeI GAWTC 8 cut(s) 47, 200, 665, 719, 848, 878, 1267, 1346
PfoI TCCNGGA 1 cut(s) 1470
PkrI GCNGC 5 cut(s) 41, 463, 1008, 1583, 1586
PleI GAGTC 7 cut(s) 289, 379, 844, 1054, 1630, 1674, 1757
PmaCI CACGTG 1 cut(s) 845
PmlI CACGTG 1 cut(s) 845
PpsI GAGTC 7 cut(s) 289, 379, 844, 1054, 1630, 1674, 1757
Ppu21I YACGTR 1 cut(s) 845
PshAI GACNNNNGTC 1 cut(s) 398
Psp6I CCWGG 2 cut(s) 1470, 1717
PspCI CACGTG 1 cut(s) 845
PspGI CCWGG 2 cut(s) 1470, 1717
PspN4I GGNNCC 3 cut(s) 1318, 1372, 1798
PspPI GGNCC 1 cut(s) 1758
PspXI VCTCGAGB 1 cut(s) 1746
PstNI CAGNNNCTG 2 cut(s) 203, 1625
PsuI RGATCY 2 cut(s) 1358, 1739
RseI CAYNNNNRTG 1 cut(s) 1392
SaqAI TTAA 2 cut(s) 696, 779
SatI GCNGC 5 cut(s) 40, 462, 1007, 1582, 1585
Sau96I GGNCC 1 cut(s) 1758
SchI GAGTC 7 cut(s) 289, 380, 845, 1055, 1631, 1675, 1758
ScrFI CCNGG 2 cut(s) 1472, 1719
SduI GDGCHC 3 cut(s) 197, 553, 1799
SexAI ACCWGGT 1 cut(s) 1717
SfaNI GCATC 5 cut(s) 145, 319, 931, 1063, 1387
Sfr274I CTCGAG 1 cut(s) 1746
SinI GGWCC 1 cut(s) 1758
SlaI CTCGAG 1 cut(s) 1746
SmiMI CAYNNNNRTG 1 cut(s) 1392
SmlI CTYRAG 2 cut(s) 1176, 1746
SmoI CTYRAG 2 cut(s) 1176, 1746
SphI GCATGC 1 cut(s) 494
Sse9I AATT 8 cut(s) 27, 251, 828, 883, 1121, 1147, 1521, 1549
SsiI CCGC 3 cut(s) 39, 652, 1756
SspI AATATT 1 cut(s) 863
SspMI CTAG 3 cut(s) 231, 1155, 1629
StyD4I CCNGG 2 cut(s) 1470, 1717
StyI CCWWGG 2 cut(s) 1279, 1374
TaaI ACNGT 4 cut(s) 157, 241, 288, 988
TaiI ACGT 2 cut(s) 106, 847
TaqI TCGA 6 cut(s) 69, 139, 593, 1160, 1664, 1747
TasI AATT 8 cut(s) 27, 251, 828, 883, 1121, 1147, 1521, 1549
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 8 cut(s) 47, 200, 665, 719, 848, 878, 1267, 1346
Tru1I TTAA 2 cut(s) 696, 779
Tru9I TTAA 2 cut(s) 696, 779
TscAI CASTG 3 cut(s) 160, 801, 993
TseFI GTSAC 2 cut(s) 95, 1382
TseI GCWGC 4 cut(s) 461, 1006, 1581, 1584
Tsp45I GTSAC 2 cut(s) 95, 1382
TspDTI ATGAA 4 cut(s) 680, 891, 1158, 1597
TspGWI ACGGA 3 cut(s) 107, 458, 1478
TspRI CASTG 3 cut(s) 160, 801, 993
VpaK11BI GGWCC 1 cut(s) 1758
XapI RAATTY 4 cut(s) 828, 883, 1121, 1549
XceI RCATGY 2 cut(s) 39, 494
XhoI CTCGAG 1 cut(s) 1746
XmnI GAANNNNTTC 1 cut(s) 828
XspI CTAG 3 cut(s) 231, 1155, 1629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.