Rh6DG426500

iq-domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
60745597 .. 60750325
4729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG426500.1

Sequence Viewer

Length: 1761 bp
ATGCAAGCTCTTGTTCGTGCTCGTCAATCTCTTCAGAAGGATAACCATAGTTCAAAAACCTCGAAGAAGGCAAATGTAACCTACATTTCCATTGAAAAGCTACTTAGCAATAGCTTTGCCCGCCAGCTCTTAGAATCAACACCGAAGAACCAACCTATTCATGTTAAGTGTGATCCTTCTAAGCCTGATTCTGCTTGGAAATGGTTGGAAATGTGGATGTCAGTCTCAACGAAGGATACTCCACATTTAAACGAGGCAGTATCAGTGGTAGAGCAACAGGAAACAGAAAAGGAAGAAATTCCCGAGTCTCCACGTGAATCTAAAACTCAATATTGTGAGATGGATGAATCAAATTCCAGCATAAGGGAGATTGCGCTTTCTGAAAGTGAAGAAAGTCTGATTACTTATGATGCCGACAACTTGAACTTTCAGGCAAGCCATTCTACCCCTTATACAGTGAGAGACAATAATGAGCAGCCTCAGTTGGAGAACACCAGTACATCTGCTGTGAAAGAGACCCCAGTAGAAATAAATCTGTCAGATGCAGATTCTAACATGGAGTTCAAAGCTTTATCTGGGAAACCTGTAATCGAAACTGAACAACCTAAACGTTCTATGAAAAGATCTGCCACAGAACAACTGGAAACTGATGGAAAGAAATCTGTATTTGGATCCAGAAATGTGACTAATCCTGCATTTATTGCTGCTCAGTCAAAATTTGCAGAGCTGACCTCAACAACCAATTCAGCTAGGTCGATCAGTTCATCTCCTCAAGATGTTTCTGGAGTTGAACCACAAAGGGACACATTCTCATCTGAGGTGGATACTGAAGTCAGAGCAAAGGAGCTAAGTGTAGCAGAGAATCCAATCCCCCATGGATCACAAGTTCAAGTGGGTGGTTCTGAGTGTGGCACCGAAATTTCTATTTCTTCCACTCTTGATTCGCCTGATAGATCTGATATTGGAGCCATGGAGCGTGACCATGACCATGATGCAAAAGTTTTGGAGGAAAGGATTTGCAGTCCAAAAAATGCAAGAAACATTGATGTTGAAACTAAGGATTTCCTGGAAACCCCAGTCTCCAACTTATGTAACGCTGTTGCAGAACCCGAGAAAATTGGTGCTGTCAATGGTGAAACCATAAATTCTGAGGTTGCTATGGTCTCCTCACAAACAGAGTCAAAGCCAGAGAGAACCACATCTGATGTACAGAGAGAACAGGACACTGAAGCAAGTATGCAAGCATATGGTTCATCCCCAGAAGCCTCACCAAGAAGCCATTTGACTGTCCCTGAATCACAGCAAGGGACACCTTCTAGTCTGGTATCAGTGAAAGGCAAAAGGAACAAAGGTGACAAGGATGGATCCAATAAAAAACGTATGTCCCTGTCTGCAGGAAAGAAATCGCCCTCTAATCCAAATCATGATTCTGGCTCAAGTAAAGATCATAAAAATGGGAAGAGACGCAATTCATTTGGTTCGACTAAACCTGATCAGGCTGATCAAGAACCAAGAGATAGCAGCAGCAGTAGTTCTATTCCTCATTTCATGCAAGCCACAGAGTCTGCTAGAGCAAAGCTTCAAGCAACCACCTCTCCCAGATCGAGTCCAGATGTGCAAGACAGGGAGATTTACATCAAGAAGAGACATTCCTTACCTGGTGTGAATGGAAGGCAGGGATCTCCTCGCGTCCAGCGGTCCATGTCTCAGGCTCAGACACAGCAGGGTGCAAAGGGCACTGAGAGAAAATGGCAAAGGTGA

Protein Analysis

586

Amino Acids

64.4

Weight (kDa)

5.8

Isoelectric Point (pI)

59.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 501 - 574 3.5e-06 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011221)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 911
AccII CGCG 1 cut(s) 1689
AciI CCGC 2 cut(s) 121, 1696
AclI AACGTT 1 cut(s) 610
AclWI GGATC 7 cut(s) 167, 666, 679, 886, 1359, 1372, 1687
AcsI RAATTY 5 cut(s) 297, 352, 716, 918, 1144
AcuI CTGAAG 3 cut(s) 17, 849, 1248
AcvI CACGTG 1 cut(s) 314
AfaI GTAC 2 cut(s) 499, 1209
AfiI CCNNNNNNNGG 1 cut(s) 363
AgsI TTSAA 8 cut(s) 54, 95, 424, 565, 791, 890, 1052, 1583
AjnI CCWGG 2 cut(s) 1065, 1657
AjuI GAANNNNNNNTTGG 2 cut(s) 1411, 1443
AloI GAACNNNNNNTCC 2 cut(s) 870, 902
AluBI AGCT 9 cut(s) 8, 100, 114, 127, 569, 727, 749, 847, 1579
AluI AGCT 9 cut(s) 8, 100, 114, 127, 569, 727, 749, 847, 1579
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 9 cut(s) 229, 312, 456, 509, 1084, 1168, 1456, 1639, 1710
AlwI GGATC 7 cut(s) 167, 666, 679, 886, 1359, 1372, 1687
AlwNI CAGNNNCTG 1 cut(s) 1565
Ama87I CYCGRG 2 cut(s) 302, 1109
ApeKI GCWGC 4 cut(s) 475, 704, 1521, 1524
ApoI RAATTY 5 cut(s) 297, 352, 716, 918, 1144
Asp700I GAANNNNTTC 1 cut(s) 297
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 1698
AsuHPI GGTGA 3 cut(s) 1145, 1260, 1364
AvaI CYCGRG 2 cut(s) 302, 1109
AvaII GGWCC 1 cut(s) 1698
BaeGI GKGCMC 1 cut(s) 1739
BaeI ACNNNNGTAYC 2 cut(s) 816, 849
BamHI GGATCC 2 cut(s) 671, 1364
BanI GGYRCC 1 cut(s) 911
BbrPI CACGTG 1 cut(s) 314
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 4 cut(s) 487, 691, 1533, 1536
BccI CCATC 3 cut(s) 334, 644, 1355
BciT130I CCWGG 2 cut(s) 1067, 1659
BciVI GTATCC 2 cut(s) 229, 817
BclI TGATCA 2 cut(s) 1492, 1501
BcoDI GTCTC 9 cut(s) 229, 312, 456, 509, 1084, 1168, 1456, 1639, 1710
BfaI CTAG 3 cut(s) 750, 1317, 1569
BfmI CTRYAG 1 cut(s) 1392
BfuI GTATCC 2 cut(s) 229, 817
BglII AGATCT 2 cut(s) 623, 953
BisI GCNGC 4 cut(s) 476, 705, 1522, 1525
BlsI GCNGC 4 cut(s) 477, 706, 1523, 1526
Bme1390I CCNGG 2 cut(s) 1067, 1659
Bme18I GGWCC 1 cut(s) 1698
BmeT110I CYCGRG 2 cut(s) 302, 1109
BmgT120I GGNCC 1 cut(s) 1698
BmiI GGNNCC 4 cut(s) 673, 913, 967, 1366
BmrFI CCNGG 2 cut(s) 1067, 1659
BmrI ACTGGG 2 cut(s) 515, 1070
BmsI GCATC 3 cut(s) 400, 532, 982
BmuI ACTGGG 2 cut(s) 515, 1070
BplI GAGNNNNNCTC 2 cut(s) 716, 748
BpmI CTGGAG 1 cut(s) 804
BpuEI CTTGAG 2 cut(s) 756, 1420
BsaAI YACGTR 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 1634
BsaI GGTCTC 2 cut(s) 509, 1168
BsaJI CCNNGG 2 cut(s) 874, 969
BsaXI ACNNNNNCTCC 2 cut(s) 1579, 1609
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse1I ACTGG 4 cut(s) 495, 521, 645, 1076
Bse8I GATNNNNATC 1 cut(s) 1634
BseBI CCWGG 2 cut(s) 1067, 1659
BseDI CCNNGG 2 cut(s) 874, 969
BseGI GGATG 4 cut(s) 222, 349, 1253, 1366
BseJI GATNNNNATC 1 cut(s) 1634
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMII CTCAG 8 cut(s) 494, 722, 807, 894, 1140, 1721, 1727, 1731
BseNI ACTGG 4 cut(s) 495, 521, 645, 1076
BseRI GAGGAG 3 cut(s) 759, 1156, 1674
BseSI GKGCMC 1 cut(s) 1739
BseXI GCAGC 4 cut(s) 487, 691, 1533, 1536
Bsh1236I CGCG 1 cut(s) 1689
BshNI GGYRCC 1 cut(s) 911
BsiHKAI GWGCWC 1 cut(s) 22
BsiHKCI CYCGRG 2 cut(s) 302, 1109
BslFI GGGAC 4 cut(s) 815, 1274, 1321, 1369
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 9 cut(s) 229, 312, 456, 509, 1084, 1168, 1456, 1639, 1710
BsmBI CGTCTC 1 cut(s) 1456
BsmFI GGGAC 4 cut(s) 815, 1274, 1321, 1369
Bso31I GGTCTC 2 cut(s) 509, 1168
BsoBI CYCGRG 2 cut(s) 302, 1109
Bsp1286I GDGCHC 2 cut(s) 22, 1739
Bsp1407I TGTACA 1 cut(s) 1207
Bsp19I CCATGG 2 cut(s) 874, 969
BspACI CCGC 2 cut(s) 121, 1696
BspCNI CTCAG 8 cut(s) 493, 721, 808, 895, 1141, 1720, 1726, 1732
BspFNI CGCG 1 cut(s) 1689
BspHI TCATGA 1 cut(s) 1423
BspLI GGNNCC 4 cut(s) 673, 913, 967, 1366
BspMAI CTGCAG 1 cut(s) 1396
BspPI GGATC 7 cut(s) 167, 666, 679, 886, 1359, 1372, 1687
BspT107I GGYRCC 1 cut(s) 911
BspTNI GGTCTC 2 cut(s) 509, 1168
BsrGI TGTACA 1 cut(s) 1207
BsrI ACTGG 4 cut(s) 495, 521, 645, 1076
BssECI CCNNGG 2 cut(s) 874, 969
BssT1I CCWWGG 2 cut(s) 874, 969
Bst2UI CCWGG 2 cut(s) 1067, 1659
Bst4CI ACNGT 2 cut(s) 457, 1288
Bst6I CTCTTC 3 cut(s) 36, 1454, 1637
BstAPI GCANNNNNTGC 1 cut(s) 701
BstAUI TGTACA 1 cut(s) 1207
BstBAI YACGTR 1 cut(s) 314
BstC8I GCNNGC 6 cut(s) 6, 121, 125, 436, 1242, 1554
BstDSI CCRYGG 2 cut(s) 874, 969
BstF5I GGATG 4 cut(s) 222, 349, 1253, 1366
BstFNI CGCG 1 cut(s) 1689
BstHHI GCGC 1 cut(s) 376
BstMAI GTCTC 9 cut(s) 229, 312, 456, 509, 1084, 1168, 1456, 1639, 1710
BstMWI GCNNNNNNNGC 2 cut(s) 120, 701
BstNI CCWGG 2 cut(s) 1067, 1659
BstSCI CCNGG 2 cut(s) 1065, 1657
BstSFI CTRYAG 1 cut(s) 1392
BstSLI GKGCMC 1 cut(s) 1739
BstUI CGCG 1 cut(s) 1689
BstV1I GCAGC 4 cut(s) 487, 691, 1533, 1536
BstX2I RGATCY 5 cut(s) 623, 671, 953, 1364, 1679
BstYI RGATCY 5 cut(s) 623, 671, 953, 1364, 1679
BsuI GTATCC 2 cut(s) 229, 817
BtgI CCRYGG 2 cut(s) 874, 969
BtsCI GGATG 4 cut(s) 222, 349, 1253, 1366
BtsIMutI CAGTG 5 cut(s) 270, 462, 1224, 1335, 1737
Cac8I GCNNGC 6 cut(s) 6, 121, 125, 436, 1242, 1554
CaiI CAGNNNCTG 1 cut(s) 1565
CciI TCATGA 1 cut(s) 1423
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 1698
CseI GACGC 2 cut(s) 1473, 1678
CsiI ACCWGGT 1 cut(s) 1657
Csp6I GTAC 2 cut(s) 498, 1208
CviAII CATG 9 cut(s) 161, 556, 875, 970, 983, 989, 1424, 1549, 1702
CviQI GTAC 2 cut(s) 498, 1208
DraI TTTAAA 1 cut(s) 249
Eam1104I CTCTTC 3 cut(s) 36, 1454, 1637
EarI CTCTTC 3 cut(s) 36, 1454, 1637
Eco130I CCWWGG 2 cut(s) 874, 969
Eco31I GGTCTC 2 cut(s) 509, 1168
Eco47I GGWCC 1 cut(s) 1698
Eco57I CTGAAG 3 cut(s) 17, 849, 1248
Eco72I CACGTG 1 cut(s) 314
Eco88I CYCGRG 2 cut(s) 302, 1109
EcoRII CCWGG 2 cut(s) 1065, 1657
EcoT14I CCWWGG 2 cut(s) 874, 969
ErhI CCWWGG 2 cut(s) 874, 969
Esp3I CGTCTC 1 cut(s) 1456
FaeI CATG 9 cut(s) 164, 559, 878, 973, 986, 992, 1427, 1552, 1705
FaqI GGGAC 4 cut(s) 815, 1274, 1321, 1369
FatI CATG 9 cut(s) 160, 555, 874, 969, 982, 988, 1423, 1548, 1701
FauI CCCGC 1 cut(s) 128
FauNDI CATATG 1 cut(s) 1246
FbaI TGATCA 2 cut(s) 1492, 1501
Fnu4HI GCNGC 4 cut(s) 476, 705, 1522, 1525
FokI GGATG 4 cut(s) 229, 356, 1240, 1373
Fsp4HI GCNGC 4 cut(s) 476, 705, 1522, 1525
FspBI CTAG 3 cut(s) 750, 1317, 1569
GlaI GCGC 1 cut(s) 375
GluI GCNGC 4 cut(s) 476, 705, 1522, 1525
GsuI CTGGAG 1 cut(s) 804
HgaI GACGC 2 cut(s) 1473, 1678
HhaI GCGC 1 cut(s) 376
Hin1II CATG 9 cut(s) 164, 559, 878, 973, 986, 992, 1427, 1552, 1705
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HindIII AAGCTT 2 cut(s) 567, 1577
HphI GGTGA 3 cut(s) 1145, 1260, 1364
Hpy188III TCNNGA 9 cut(s) 302, 675, 773, 783, 938, 1424, 1505, 1610, 1639
HpyAV CCTTC 6 cut(s) 31, 61, 186, 226, 1323, 1665
HpyCH4III ACNGT 2 cut(s) 457, 1288
HpyCH4IV ACGT 3 cut(s) 313, 610, 1378
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 701
HpySE526I ACGT 3 cut(s) 313, 610, 1378
Hsp92II CATG 9 cut(s) 164, 559, 878, 973, 986, 992, 1427, 1552, 1705
HspAI GCGC 1 cut(s) 374
Ksp22I TGATCA 2 cut(s) 1492, 1501
LmnI GCTCC 3 cut(s) 844, 965, 973
Lsp1109I GCAGC 4 cut(s) 487, 691, 1533, 1536
LweI GCATC 3 cut(s) 400, 532, 982
MabI ACCWGGT 1 cut(s) 1657
MaeI CTAG 3 cut(s) 750, 1317, 1569
MaeII ACGT 3 cut(s) 313, 610, 1378
MaeIII GTNAC 5 cut(s) 76, 682, 977, 1091, 1352
MboII GAAGA 8 cut(s) 23, 76, 157, 305, 401, 921, 1471, 1654
MflI RGATCY 5 cut(s) 623, 671, 953, 1364, 1679
MhlI GDGCHC 2 cut(s) 22, 1739
MluCI AATT 8 cut(s) 297, 352, 716, 742, 918, 1116, 1144, 1468
MlyI GAGTC 4 cut(s) 314, 1187, 1571, 1615
MmeI TCCRAC 3 cut(s) 186, 465, 1107
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 2 cut(s) 165, 248
MslI CAYNNNNRTG 2 cut(s) 987, 1452
MspA1I CMGCKG 1 cut(s) 1696
MspR9I CCNGG 2 cut(s) 1067, 1659
MvaI CCWGG 2 cut(s) 1067, 1659
MvnI CGCG 1 cut(s) 1689
MwoI GCNNNNNNNGC 2 cut(s) 120, 701
NcoI CCATGG 2 cut(s) 874, 969
NdeI CATATG 1 cut(s) 1246
NlaIII CATG 9 cut(s) 164, 559, 878, 973, 986, 992, 1427, 1552, 1705
NlaIV GGNNCC 4 cut(s) 673, 913, 967, 1366
NmuCI GTSAC 3 cut(s) 682, 977, 1352
PagI TCATGA 1 cut(s) 1423
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 9 cut(s) 134, 188, 317, 347, 548, 862, 941, 1295, 1427
PfoI TCCNGGA 1 cut(s) 1065
PkrI GCNGC 4 cut(s) 477, 706, 1523, 1526
PleI GAGTC 4 cut(s) 313, 1186, 1570, 1614
PmaCI CACGTG 1 cut(s) 314
PmlI CACGTG 1 cut(s) 314
PpsI GAGTC 4 cut(s) 313, 1186, 1570, 1614
Ppu21I YACGTR 1 cut(s) 314
Psp1406I AACGTT 1 cut(s) 610
Psp6I CCWGG 2 cut(s) 1065, 1657
PspCI CACGTG 1 cut(s) 314
PspGI CCWGG 2 cut(s) 1065, 1657
PspN4I GGNNCC 4 cut(s) 673, 913, 967, 1366
PspPI GGNCC 1 cut(s) 1698
PstI CTGCAG 1 cut(s) 1396
PstNI CAGNNNCTG 1 cut(s) 1565
PsuI RGATCY 5 cut(s) 623, 671, 953, 1364, 1679
RsaI GTAC 2 cut(s) 499, 1209
RsaNI GTAC 2 cut(s) 498, 1208
RseI CAYNNNNRTG 2 cut(s) 987, 1452
SaqAI TTAA 2 cut(s) 165, 248
SatI GCNGC 4 cut(s) 476, 705, 1522, 1525
Sau96I GGNCC 1 cut(s) 1698
SchI GAGTC 4 cut(s) 314, 1187, 1571, 1615
ScrFI CCNGG 2 cut(s) 1067, 1659
SduI GDGCHC 2 cut(s) 22, 1739
SexAI ACCWGGT 1 cut(s) 1657
SfaNI GCATC 3 cut(s) 400, 532, 982
SfcI CTRYAG 1 cut(s) 1392
SinI GGWCC 1 cut(s) 1698
SmiMI CAYNNNNRTG 2 cut(s) 987, 1452
SmlI CTYRAG 2 cut(s) 771, 1435
SmoI CTYRAG 2 cut(s) 771, 1435
Sse9I AATT 8 cut(s) 297, 352, 716, 742, 918, 1116, 1144, 1468
SsiI CCGC 2 cut(s) 121, 1696
SspI AATATT 1 cut(s) 332
SspMI CTAG 3 cut(s) 750, 1317, 1569
StyD4I CCNGG 2 cut(s) 1065, 1657
StyI CCWWGG 2 cut(s) 874, 969
TaaI ACNGT 2 cut(s) 457, 1288
TaiI ACGT 3 cut(s) 316, 613, 1381
TaqI TCGA 5 cut(s) 62, 591, 755, 1481, 1604
TasI AATT 8 cut(s) 297, 352, 716, 742, 918, 1116, 1144, 1468
TatI WGTACW 2 cut(s) 497, 1207
TfiI GAWTC 9 cut(s) 134, 188, 317, 347, 548, 862, 941, 1295, 1427
Tru1I TTAA 2 cut(s) 165, 248
Tru9I TTAA 2 cut(s) 165, 248
TscAI CASTG 5 cut(s) 270, 462, 1231, 1335, 1744
TseFI GTSAC 3 cut(s) 682, 977, 1352
TseI GCWGC 4 cut(s) 475, 704, 1521, 1524
Tsp45I GTSAC 3 cut(s) 682, 977, 1352
TspDTI ATGAA 7 cut(s) 149, 360, 632, 753, 1242, 1461, 1537
TspRI CASTG 5 cut(s) 270, 462, 1231, 1335, 1744
VpaK11BI GGWCC 1 cut(s) 1698
XapI RAATTY 5 cut(s) 297, 352, 716, 918, 1144
XcmI CCANNNNNNNNNTGG 1 cut(s) 637
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 3 cut(s) 750, 1317, 1569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.