RLG00000011421

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018225
Physical Location & Seq
Reverse (-)
9317460 .. 9320916
3457 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011421

Sequence Viewer

Length: 747 bp
ATGATCGAGGAGGAGATGGGACATGTCAAATCAGTGCTGAAACAGGTGATTGGGTTGCTGCCTGAGAATGCTTTGGTTGGGTTCATCTCATTCGGGACTCAAGTGCAGGTGCATGAATTGGGGTTCGCCGAATTGAGCAAGGTCTATGTGTTTAGGGGGAATAAGGAGATTTCCAAAGATCAGATGCTGGAGCAATTGGACCTGCCAACGGGACGCGATCTTGGTGGTGATTTCTCGGGGCTTCGATGTCAGCGACGGGAAAATCCATACAAGTTGAACGCACGTCCCTGCGGCGTTGTCGTCGGACAGGTTACTTCCTTTCTCGCCGTCCTTCTTCGACGTGCAAGCGTGCTTTCAGTTAGCAGTGAGTGGTGGTGGTTGGGTTTGACGGATCTGATTTGGATCGTGACTTTAGCTTTTGTCGAAATGATACAACGACGGGGCGGGGTTGGAGGCGGGGTGGTGCAGGGTGGTCAGATTTTGATGAGATGGTCGGTGCATGGTGATGGCATAGTGTCGGCGAGGCTAGGCTCCTGGTTTCCTTTGTTCAATCGGTGGTTGTGCTCACAATCCAGATGCAAATTGGATGATAGGGTATGGCAACGATGGTGGGACAATGGATACTGTCTGGTGGGGGTGGTGGTGGTCTGGAGGAGTCGCGACCAGATGGATGACGTTATGGTGGTGGGGGATGTGTTCTGTTGGGGATTGGCCGGCAATGCTTGGTTGACAGCGGTGGCGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

249

Amino Acids

27.86

Weight (kDa)

7.61

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_trunk PF04811 3 - 68 4.3e-08 Sec23/Sec24 trunk domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018225)

Species Orthologous Gene IDs
rosa_laevigata RLG00000011421
rosa_multiflora Rmu_ssc0000008.1_g000046
rosa_rugosa Rorug01G0203400
rosa_samantha Rh1AG220700 Rh1BG186900 Rh1CG028900 Rh1CG205800 Rh1DG209100 Rh6AG196600 Rh6BG434700 Rh6DG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 97
Acc36I ACCTGC 2 cut(s) 97, 210
AccII CGCG 2 cut(s) 216, 660
AciI CCGC 5 cut(s) 291, 444, 456, 734, 740
AclWI GGATC 2 cut(s) 399, 410
AcoI YGGCCR 1 cut(s) 711
AfiI CCNNNNNNNGG 1 cut(s) 208
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 2 cut(s) 277, 550
AjiI CACGTC 2 cut(s) 284, 341
AjnI CCWGG 1 cut(s) 533
AluBI AGCT 1 cut(s) 416
AluI AGCT 1 cut(s) 416
Alw21I GWGCWC 1 cut(s) 566
AlwI GGATC 2 cut(s) 399, 410
AlwNI CAGNNNCTG 1 cut(s) 187
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 1 cut(s) 711
ApeKI GCWGC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 3 cut(s) 58, 239, 515
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 566
BbvI GCAGC 1 cut(s) 45
BccI CCATC 5 cut(s) 10, 483, 500, 600, 661
BceAI ACGGC 1 cut(s) 311
BciT130I CCWGG 1 cut(s) 535
BciVI GTATCC 1 cut(s) 614
BfaI CTAG 2 cut(s) 527, 745
BfuAI ACCTGC 2 cut(s) 97, 210
BfuI GTATCC 1 cut(s) 614
BisI GCNGC 2 cut(s) 59, 292
BlsI GCNGC 2 cut(s) 60, 293
Bme1390I CCNGG 1 cut(s) 535
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 235
BmgBI CACGTC 2 cut(s) 284, 341
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 532
BmrFI CCNGG 1 cut(s) 535
BmsI GCATC 2 cut(s) 174, 566
BpmI CTGGAG 2 cut(s) 209, 670
BpuEI CTTGAG 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 401
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse118I RCCGGY 1 cut(s) 713
Bse3DI GCAATG 1 cut(s) 724
Bse8I GATNNNNATC 1 cut(s) 401
BseBI CCWGG 1 cut(s) 535
BseGI GGATG 3 cut(s) 592, 676, 697
BseJI GATNNNNATC 1 cut(s) 401
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMI GCAATG 1 cut(s) 724
BseMII CTCAG 1 cut(s) 54
BseRI GAGGAG 3 cut(s) 23, 26, 667
BseXI GCAGC 1 cut(s) 45
BsgI GTGCAG 2 cut(s) 125, 485
Bsh1236I CGCG 2 cut(s) 216, 660
BshFI GGCC 1 cut(s) 713
BsiHKAI GWGCWC 1 cut(s) 566
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 1 cut(s) 714
BslFI GGGAC 5 cut(s) 33, 109, 225, 270, 626
BslI CCNNNNNNNGG 1 cut(s) 208
BsmFI GGGAC 5 cut(s) 33, 109, 225, 270, 626
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 1 cut(s) 713
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 566
Bsp143I GATC 5 cut(s) 3, 178, 217, 391, 402
Bsp68I TCGCGA 1 cut(s) 660
BspACI CCGC 5 cut(s) 291, 444, 456, 734, 740
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 1 cut(s) 55
BspFNI CGCG 2 cut(s) 216, 660
BspLI GGNNCC 1 cut(s) 532
BspMI ACCTGC 2 cut(s) 97, 210
BspPI GGATC 2 cut(s) 399, 410
BsrDI GCAATG 1 cut(s) 724
BsrFI RCCGGY 1 cut(s) 713
BssAI RCCGGY 1 cut(s) 713
BssMI GATC 5 cut(s) 3, 178, 217, 391, 402
Bst2UI CCWGG 1 cut(s) 535
Bst4CI ACNGT 1 cut(s) 626
BstC8I GCNNGC 3 cut(s) 346, 350, 715
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 3 cut(s) 592, 676, 697
BstFNI CGCG 2 cut(s) 216, 660
BstKTI GATC 5 cut(s) 6, 181, 220, 394, 405
BstMBI GATC 5 cut(s) 3, 178, 217, 391, 402
BstMWI GCNNNNNNNGC 1 cut(s) 719
BstNI CCWGG 1 cut(s) 535
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 533
BstUI CGCG 2 cut(s) 216, 660
BstV1I GCAGC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BsuI GTATCC 1 cut(s) 614
BsuRI GGCC 1 cut(s) 713
BtrI CACGTC 2 cut(s) 284, 341
BtsCI GGATG 3 cut(s) 592, 676, 697
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 2 cut(s) 39, 370
BtuMI TCGCGA 1 cut(s) 660
BveI ACCTGC 2 cut(s) 97, 210
Cac8I GCNNGC 3 cut(s) 346, 350, 715
CaiI CAGNNNCTG 1 cut(s) 187
Cfr10I RCCGGY 1 cut(s) 713
Cfr13I GGNCC 1 cut(s) 199
CseI GACGC 1 cut(s) 222
CspCI CAANNNNNGTGG 2 cut(s) 590, 625
CviAII CATG 3 cut(s) 23, 113, 500
CviJI RGCY 5 cut(s) 241, 416, 526, 531, 713
CviKI_1 RGCY 5 cut(s) 241, 416, 526, 531, 713
DdeI CTNAG 1 cut(s) 63
DpnI GATC 5 cut(s) 5, 180, 219, 393, 404
DpnII GATC 5 cut(s) 3, 178, 217, 391, 402
EaeI YGGCCR 1 cut(s) 711
Eco47I GGWCC 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 533
FaeI CATG 3 cut(s) 26, 116, 503
FaiI YATR 8 cut(s) 24, 114, 147, 268, 501, 512, 598, 680
FaqI GGGAC 5 cut(s) 33, 109, 225, 270, 626
FatI CATG 3 cut(s) 22, 112, 499
FauI CCCGC 2 cut(s) 437, 449
Fnu4HI GCNGC 2 cut(s) 59, 292
FokI GGATG 3 cut(s) 599, 683, 704
Fsp4HI GCNGC 2 cut(s) 59, 292
FspBI CTAG 2 cut(s) 527, 745
GluI GCNGC 2 cut(s) 59, 292
GsuI CTGGAG 2 cut(s) 209, 670
HaeIII GGCC 1 cut(s) 713
HapII CCGG 1 cut(s) 714
HgaI GACGC 1 cut(s) 222
Hin1II CATG 3 cut(s) 26, 116, 503
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HinfI GANTC 2 cut(s) 97, 655
HpaII CCGG 1 cut(s) 714
HphI GGTGA 3 cut(s) 58, 239, 515
Hpy166II GTNNAC 1 cut(s) 729
Hpy188I TCNGA 4 cut(s) 183, 305, 396, 477
Hpy188III TCNNGA 5 cut(s) 94, 406, 573, 649, 659
Hpy8I GTNNAC 1 cut(s) 729
Hpy99I CGWCG 4 cut(s) 258, 305, 342, 441
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 1 cut(s) 626
HpyCH4IV ACGT 3 cut(s) 283, 340, 675
HpyCH4V TGCA 6 cut(s) 106, 112, 344, 466, 499, 579
HpyF10VI GCNNNNNNNGC 1 cut(s) 719
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 3 cut(s) 283, 340, 675
Hsp92II CATG 3 cut(s) 26, 116, 503
KroI GCCGGC 1 cut(s) 713
KroNI GCCGGC 1 cut(s) 715
Kzo9I GATC 5 cut(s) 3, 178, 217, 391, 402
LmnI GCTCC 2 cut(s) 190, 536
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 2 cut(s) 174, 566
MaeI CTAG 2 cut(s) 527, 745
MaeII ACGT 3 cut(s) 283, 340, 675
MaeIII GTNAC 2 cut(s) 310, 406
MalI GATC 5 cut(s) 5, 180, 219, 393, 404
MboI GATC 5 cut(s) 3, 178, 217, 391, 402
MboII GAAGA 1 cut(s) 326
MfeI CAATTG 1 cut(s) 194
MflI RGATCY 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 566
MluCI AATT 4 cut(s) 116, 131, 194, 581
MlyI GAGTC 2 cut(s) 91, 664
MmeI TCCRAC 2 cut(s) 283, 430
MnlI CCTC 4 cut(s) 4, 446, 516, 645
MroNI GCCGGC 1 cut(s) 713
MslI CAYNNNNRTG 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 734
MspI CCGG 1 cut(s) 714
MspR9I CCNGG 1 cut(s) 535
MunI CAATTG 1 cut(s) 194
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 1 cut(s) 535
MvnI CGCG 2 cut(s) 216, 660
MwoI GCNNNNNNNGC 1 cut(s) 719
NaeI GCCGGC 1 cut(s) 715
NdeII GATC 5 cut(s) 3, 178, 217, 391, 402
NgoMIV GCCGGC 1 cut(s) 713
NlaIII CATG 3 cut(s) 26, 116, 503
NlaIV GGNNCC 1 cut(s) 532
NmuCI GTSAC 1 cut(s) 406
NruI TCGCGA 1 cut(s) 660
NspI RCATGY 1 cut(s) 26
PaqCI CACCTGC 1 cut(s) 97
PciI ACATGT 1 cut(s) 22
PcsI WCGNNNNNNNCGW 1 cut(s) 250
PctI GAATGC 1 cut(s) 73
PdiI GCCGGC 1 cut(s) 715
PkrI GCNGC 2 cut(s) 60, 293
PleI GAGTC 2 cut(s) 91, 663
PpsI GAGTC 2 cut(s) 91, 663
PscI ACATGT 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 533
PspGI CCWGG 1 cut(s) 533
PspN4I GGNNCC 1 cut(s) 532
PspPI GGNCC 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 391
RruI TCGCGA 1 cut(s) 660
RseI CAYNNNNRTG 1 cut(s) 504
SatI GCNGC 2 cut(s) 59, 292
Sau3AI GATC 5 cut(s) 3, 178, 217, 391, 402
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 2 cut(s) 91, 664
ScrFI CCNGG 1 cut(s) 535
SduI GDGCHC 1 cut(s) 566
SetI ASST 9 cut(s) 48, 111, 144, 204, 286, 312, 343, 418, 678
SfaNI GCATC 2 cut(s) 174, 566
SinI GGWCC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 4 cut(s) 116, 131, 194, 581
SsiI CCGC 5 cut(s) 291, 444, 456, 734, 740
SspMI CTAG 2 cut(s) 527, 745
StyD4I CCNGG 1 cut(s) 533
TaaI ACNGT 1 cut(s) 626
TaiI ACGT 3 cut(s) 286, 343, 678
TaqI TCGA 4 cut(s) 6, 244, 337, 423
TasI AATT 4 cut(s) 116, 131, 194, 581
TauI GCSGC 1 cut(s) 294
TscAI CASTG 2 cut(s) 39, 370
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 2 cut(s) 73, 129
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 2 cut(s) 39, 370
VpaK11BI GGWCC 1 cut(s) 199
XceI RCATGY 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 580
XspI CTAG 2 cut(s) 527, 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.