Rh1CG028900

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0018225
Physical Location & Seq
Forward (+)
5762053 .. 5762247
195 bp
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UTR
Exon/CDS
Intron
Rh1CG028900.1

Sequence Viewer

Length: 195 bp
ATGACTTATGTCAAATCGGAGCTGAAACAGGCAATTGGGTTGCTACCTGAGAATGCTTTGGTTGGGTTCATCTCGTTCGGGACTCAAGTGCAGGTGTATGAATTAGGGTTCGCCGAATTGAGCAAGGTCTATGTGTTTAAGGAGATTTCCAAAGATCAGGTGTTGGAGCAATTGGACAAGCAAGAGGGGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

64

Amino Acids

7.2

Weight (kDa)

4.69

Isoelectric Point (pI)

16.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_trunk PF04811 2 - 57 3.1e-08 Sec23/Sec24 trunk domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018225)

Species Orthologous Gene IDs
rosa_laevigata RLG00000011421
rosa_multiflora Rmu_ssc0000008.1_g000046
rosa_rugosa Rorug01G0203400
rosa_samantha Rh1AG220700 Rh1BG186900 Rh1CG028900 Rh1CG205800 Rh1DG209100 Rh6AG196600 Rh6BG434700 Rh6DG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 82
Acc36I ACCTGC 1 cut(s) 82
AluBI AGCT 1 cut(s) 22
AluI AGCT 1 cut(s) 22
BfuAI ACCTGC 1 cut(s) 82
BoxI GACNNNNGTC 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 39
BsgI GTGCAG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 40
BspMI ACCTGC 1 cut(s) 82
BssMI GATC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstPAI GACNNNNGTC 1 cut(s) 8
BveI ACCTGC 1 cut(s) 82
CviJI RGCY 1 cut(s) 22
CviKI_1 RGCY 1 cut(s) 22
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
FaiI YATR 4 cut(s) 9, 99, 132, 193
FaqI GGGAC 1 cut(s) 94
HinfI GANTC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 91
HpyF3I CTNAG 1 cut(s) 48
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 2 cut(s) 19, 166
LpnPI CCDG 4 cut(s) 14, 60, 77, 143
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MfeI CAATTG 2 cut(s) 33, 170
MluCI AATT 4 cut(s) 33, 101, 116, 170
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 1 cut(s) 178
MseI TTAA 1 cut(s) 138
MunI CAATTG 2 cut(s) 33, 170
Mva1269I GAATGC 1 cut(s) 58
NdeII GATC 1 cut(s) 154
PaqCI CACCTGC 1 cut(s) 82
PctI GAATGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PshAI GACNNNNGTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 138
Sau3AI GATC 1 cut(s) 154
SchI GAGTC 1 cut(s) 76
SetI ASST 5 cut(s) 24, 49, 96, 129, 162
SgeI CNNG 9 cut(s) 41, 59, 85, 91, 98, 104, 136, 170, 190
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 4 cut(s) 33, 101, 116, 170
TasI AATT 4 cut(s) 33, 101, 116, 170
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TspDTI ATGAA 2 cut(s) 58, 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.