Rmu_ssc0000008.1_g000046

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000008.1
OG0018225
Physical Location & Seq
Reverse (-)
140484 .. 143220
2737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000008.1_g000046.1.cds

Sequence Viewer

Length: 633 bp
atgacttatgtcaaatcggcgctgaaacaggcgattgggttgctacctgagaatgctttggttaggttcatcttgttcgggactcaagtgcaggtgtataaattagagttcgccgaattgagcaaggtctatgtgtttaaggggagtaaggagatttccaaagatcaggtgttggagcaattggaccagcaaaaggggattccactttctggaggggccatcggctttgggctgatggtttgggtggtagtggtgtttgtagtggcaacagaaggtgtgttgggatacgaggaggctattgtagagtactgccaagaagaaggtcggtgggatctggtggacttgatgtttgaggccgccgaggaatgcccgcaagagttaggagtccgaccagtttggggcacggagatagcgttcggccatgatgatcgaacaagccaagaacatcttccccttggaatcatggaatggcctgaaggaggaggagaggtgaagtcgggtaaggtgaaaactaatctgacattagacggagcagtccaagcccagaagccggttccggttccgccactgccgatgagcgagctgctcctcccaccgccggtgccaccctctgcgaacacgatccattactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

210

Amino Acids

23.06

Weight (kDa)

4.68

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018225)

Species Orthologous Gene IDs
rosa_laevigata RLG00000011421
rosa_multiflora Rmu_ssc0000008.1_g000046
rosa_rugosa Rorug01G0203400
rosa_samantha Rh1AG220700 Rh1BG186900 Rh1CG028900 Rh1CG205800 Rh1DG209100 Rh6AG196600 Rh6BG434700 Rh6DG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 82
AasI GACNNNNNNGTC 1 cut(s) 533
Acc36I ACCTGC 1 cut(s) 82
AccB1I GGYRCC 1 cut(s) 601
AccB7I CCANNNNNTGG 1 cut(s) 209
AciI CCGC 4 cut(s) 357, 371, 563, 596
AclWI GGATC 2 cut(s) 339, 616
AcoI YGGCCR 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 495
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 6 cut(s) 193, 209, 398, 479, 550, 598
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AloI GAACNNNNNNTCC 2 cut(s) 398, 430
AluBI AGCT 1 cut(s) 583
AluI AGCT 1 cut(s) 583
AlwI GGATC 2 cut(s) 339, 616
AoxI GGCC 4 cut(s) 216, 354, 418, 470
ApeKI GCWGC 1 cut(s) 583
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
Asp700I GAANNNNTTC 1 cut(s) 447
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 2 cut(s) 184, 216
AsuHPI GGTGA 2 cut(s) 502, 517
AvaII GGWCC 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 404
BanI GGYRCC 1 cut(s) 601
BbvI GCAGC 1 cut(s) 570
BccI CCATC 2 cut(s) 227, 229
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciVI GTATCC 1 cut(s) 278
BfoI RGCGCY 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 82
BfuI GTATCC 1 cut(s) 278
BisI GCNGC 2 cut(s) 357, 584
BlsI GCNGC 2 cut(s) 358, 585
BmcAI AGTACT 1 cut(s) 308
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 184, 216
BmiI GGNNCC 4 cut(s) 217, 555, 561, 603
BoxI GACNNNNGTC 1 cut(s) 8
BpmI CTGGAG 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 360, 454
BsaWI WCCGGW 1 cut(s) 556
BsaXI ACNNNNNCTCC 4 cut(s) 398, 428, 474, 504
Bsc4I CCNNNNNNNGG 6 cut(s) 193, 209, 398, 479, 550, 598
Bse118I RCCGGY 2 cut(s) 550, 598
Bse1I ACTGG 1 cut(s) 392
BseDI CCNNGG 2 cut(s) 360, 454
BseLI CCNNNNNNNGG 6 cut(s) 193, 209, 398, 479, 550, 598
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 392
BseRI GAGGAG 4 cut(s) 305, 495, 498, 578
BseSI GKGCMC 1 cut(s) 404
BseXI GCAGC 1 cut(s) 570
BsgI GTGCAG 1 cut(s) 110
BshFI GGCC 4 cut(s) 218, 356, 420, 472
BshNI GGYRCC 1 cut(s) 601
BsiSI CCGG 3 cut(s) 551, 557, 599
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 6 cut(s) 193, 209, 398, 479, 550, 598
BsmFI GGGAC 1 cut(s) 94
BsmI GAATGC 2 cut(s) 58, 371
BsnI GGCC 4 cut(s) 218, 356, 420, 472
Bsp1286I GDGCHC 1 cut(s) 404
Bsp143I GATC 4 cut(s) 163, 331, 427, 621
BspACI CCGC 4 cut(s) 357, 371, 563, 596
BspANI GGCC 4 cut(s) 218, 356, 420, 472
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 4 cut(s) 217, 555, 561, 603
BspMI ACCTGC 1 cut(s) 82
BspPI GGATC 2 cut(s) 339, 616
BspT107I GGYRCC 1 cut(s) 601
BsrFI RCCGGY 2 cut(s) 550, 598
BsrI ACTGG 1 cut(s) 392
BssAI RCCGGY 2 cut(s) 550, 598
BssECI CCNNGG 2 cut(s) 360, 454
BssMI GATC 4 cut(s) 163, 331, 427, 621
BssT1I CCWWGG 1 cut(s) 454
BstC8I GCNNGC 2 cut(s) 371, 581
BstDEI CTNAG 1 cut(s) 48
BstENI CCTNNNNNAGG 1 cut(s) 477
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 4 cut(s) 166, 334, 430, 624
BstMBI GATC 4 cut(s) 163, 331, 427, 621
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstPAI GACNNNNGTC 1 cut(s) 8
BstSLI GKGCMC 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 570
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuI GTATCC 1 cut(s) 278
BsuRI GGCC 4 cut(s) 218, 356, 420, 472
BtsI GCAGTG 1 cut(s) 566
BtsIMutI CAGTG 1 cut(s) 566
BveI ACCTGC 1 cut(s) 82
Cac8I GCNNGC 2 cut(s) 371, 581
CfoI GCGC 1 cut(s) 22
Cfr10I RCCGGY 2 cut(s) 550, 598
Cfr13I GGNCC 2 cut(s) 184, 216
Csp6I GTAC 1 cut(s) 307
CviAII CATG 2 cut(s) 422, 463
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 1 cut(s) 48
DpnI GATC 4 cut(s) 165, 333, 429, 623
DpnII GATC 4 cut(s) 163, 331, 427, 621
DrdI GACNNNNNNGTC 1 cut(s) 533
DseDI GACNNNNNNGTC 1 cut(s) 533
EaeI YGGCCR 1 cut(s) 418
EciI GGCGGA 1 cut(s) 552
Eco130I CCWWGG 1 cut(s) 454
Eco47I GGWCC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 495
EcoNI CCTNNNNNAGG 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 2 cut(s) 425, 466
FaiI YATR 5 cut(s) 9, 99, 132, 423, 464
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 1 cut(s) 94
FatI CATG 2 cut(s) 421, 462
FauI CCCGC 1 cut(s) 378
Fnu4HI GCNGC 2 cut(s) 357, 584
Fsp4HI GCNGC 2 cut(s) 357, 584
GlaI GCGC 1 cut(s) 21
GluI GCNGC 2 cut(s) 357, 584
GsuI CTGGAG 1 cut(s) 231
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 4 cut(s) 218, 356, 420, 472
HapII CCGG 3 cut(s) 551, 557, 599
HhaI GCGC 1 cut(s) 22
Hin1II CATG 2 cut(s) 425, 466
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HinfI GANTC 4 cut(s) 82, 199, 384, 459
HpaII CCGG 3 cut(s) 551, 557, 599
HphI GGTGA 2 cut(s) 502, 517
Hpy166II GTNNAC 1 cut(s) 340
Hpy188I TCNGA 2 cut(s) 389, 519
Hpy188III TCNNGA 2 cut(s) 79, 210
Hpy8I GTNNAC 1 cut(s) 340
HpyAV CCTTC 3 cut(s) 266, 314, 470
HpyCH4V TGCA 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 2 cut(s) 425, 466
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 4 cut(s) 163, 331, 427, 621
LmnI GCTCC 3 cut(s) 175, 530, 591
Lsp1109I GCAGC 1 cut(s) 570
MalI GATC 4 cut(s) 165, 333, 429, 623
MboI GATC 4 cut(s) 163, 331, 427, 621
MboII GAAGA 2 cut(s) 329, 440
MfeI CAATTG 1 cut(s) 179
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 404
MluCI AATT 3 cut(s) 101, 116, 179
MlyI GAGTC 2 cut(s) 76, 393
MmeI TCCRAC 2 cut(s) 153, 412
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 1 cut(s) 138
MspI CCGG 3 cut(s) 551, 557, 599
MunI CAATTG 1 cut(s) 179
Mva1269I GAATGC 2 cut(s) 58, 371
MwoI GCNNNNNNNGC 1 cut(s) 539
NdeII GATC 4 cut(s) 163, 331, 427, 621
NlaIII CATG 2 cut(s) 425, 466
NlaIV GGNNCC 4 cut(s) 217, 555, 561, 603
NmeAIII GCCGAG 1 cut(s) 385
PaqCI CACCTGC 1 cut(s) 82
PcsI WCGNNNNNNNCGW 1 cut(s) 410
PctI GAATGC 2 cut(s) 58, 371
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 2 cut(s) 199, 459
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 2 cut(s) 358, 585
PleI GAGTC 2 cut(s) 76, 392
PpsI GAGTC 2 cut(s) 76, 392
PshAI GACNNNNGTC 1 cut(s) 8
PspN4I GGNNCC 4 cut(s) 217, 555, 561, 603
PspPI GGNCC 2 cut(s) 184, 216
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 2 cut(s) 357, 584
Sau3AI GATC 4 cut(s) 163, 331, 427, 621
Sau96I GGNCC 2 cut(s) 184, 216
ScaI AGTACT 1 cut(s) 308
SchI GAGTC 2 cut(s) 76, 393
SduI GDGCHC 1 cut(s) 404
SgrAI CRCCGGYG 1 cut(s) 598
SinI GGWCC 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 3 cut(s) 101, 116, 179
SsiI CCGC 4 cut(s) 357, 371, 563, 596
StyI CCWWGG 1 cut(s) 454
TaqI TCGA 1 cut(s) 430
TasI AATT 3 cut(s) 101, 116, 179
TatI WGTACW 1 cut(s) 306
TauI GCSGC 1 cut(s) 359
TfiI GAWTC 2 cut(s) 199, 459
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 1 cut(s) 573
TseI GCWGC 1 cut(s) 583
TspDTI ATGAA 1 cut(s) 58
TspGWI ACGGA 2 cut(s) 419, 543
TspRI CASTG 1 cut(s) 573
Van91I CCANNNNNTGG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 184
XagI CCTNNNNNAGG 1 cut(s) 477
XmnI GAANNNNTTC 1 cut(s) 447
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.