Rh1BG186900

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018225
Physical Location & Seq
Reverse (-)
30186313 .. 30186798
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG186900.1

Sequence Viewer

Length: 486 bp
ATGTCGGAGATGGCGAACACCGACTCTGAGGAGATCGATGGAGTCCGCATGACGTGGAACGTGTGGCCACCCACTCGCCGCCTGCATCGCCCTGATTTGCTTCCACAACGACATCCCTATGCTCCCCTACGCGCTATTGCGCTGCAAGACTTTCTCTGTCGTCCTCAAGCCCTTCTCTCGCTTTCACTTCAATGGCAAGATCTGGATCTGCCCTTTCTTCTACCATCGCAACCACTTCCCTCCCCACTACTCCCTAATCTTCGAGACCAACCTCCTCGGCGAGCTTTACCCCCAGTACGCCACCGTCCAGTACTCCCTCCCATTCGATTTGACTCCGCACACGCTGTCGGCGCCGGTCTTCGTCTTCGTGCTCGACATGTGATCGAGGAAGAGATAGCTTATGTCAAATTGACGCTGAAACAAGCGATTGGGTTGCTGCATGAGAATGCTTTGGTTGGGTTCATCTCGTTCGGGACTCAAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

161

Amino Acids

18.3

Weight (kDa)

9.6

Isoelectric Point (pI)

80.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018225)

Species Orthologous Gene IDs
rosa_laevigata RLG00000011421
rosa_multiflora Rmu_ssc0000008.1_g000046
rosa_rugosa Rorug01G0203400
rosa_samantha Rh1AG220700 Rh1BG186900 Rh1CG028900 Rh1CG205800 Rh1DG209100 Rh6AG196600 Rh6BG434700 Rh6DG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 350
AccII CGCG 1 cut(s) 132
AciI CCGC 3 cut(s) 46, 79, 336
AclWI GGATC 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 65
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 2 cut(s) 297, 312
AflIII ACRYGT 2 cut(s) 60, 376
AgsI TTSAA 1 cut(s) 191
AjiI CACGTC 1 cut(s) 54
AluBI AGCT 2 cut(s) 284, 398
AluI AGCT 2 cut(s) 284, 398
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 1 cut(s) 213
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 142, 436
AspLEI GCGC 3 cut(s) 134, 142, 353
BalI TGGCCA 1 cut(s) 67
BanI GGYRCC 1 cut(s) 350
BbsI GAAGAC 2 cut(s) 350, 356
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 2 cut(s) 129, 423
BccI CCATC 3 cut(s) 4, 32, 232
BcgI CGANNNNNNTGC 2 cut(s) 415, 449
BcoDI GTCTC 1 cut(s) 258
BfoI RGCGCY 1 cut(s) 354
BglII AGATCT 1 cut(s) 199
BisI GCNGC 3 cut(s) 79, 143, 437
BlsI GCNGC 3 cut(s) 80, 144, 438
BmcAI AGTACT 1 cut(s) 312
BmgBI CACGTC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 352
BmrI ACTGGG 1 cut(s) 287
BmsI GCATC 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 287
BpiI GAAGAC 2 cut(s) 350, 356
BpuEI CTTGAG 2 cut(s) 150, 462
Bsa29I ATCGAT 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 275
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 2 cut(s) 293, 308
Bse8I GATNNNNATC 1 cut(s) 204
BseCI ATCGAT 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 204
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 293, 308
BseRI GAGGAG 2 cut(s) 44, 264
BseXI GCAGC 2 cut(s) 129, 423
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 350
BshVI ATCGAT 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 373
BsiSI CCGG 1 cut(s) 354
BsmAI GTCTC 1 cut(s) 258
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 258
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 4 cut(s) 33, 199, 205, 381
BspACI CCGC 3 cut(s) 46, 79, 336
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 19
BspDI ATCGAT 1 cut(s) 36
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 352
BspPI GGATC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 2 cut(s) 293, 308
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 4 cut(s) 33, 199, 205, 381
BssNI GRCGYC 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 384
BstACI GRCGYC 1 cut(s) 351
BstC8I GCNNGC 2 cut(s) 83, 282
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 3 cut(s) 134, 142, 353
BstKTI GATC 4 cut(s) 36, 202, 208, 384
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 4 cut(s) 33, 199, 205, 381
BstMWI GCNNNNNNNGC 2 cut(s) 87, 350
BstNSI RCATGY 1 cut(s) 380
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 129, 423
BstV2I GAAGAC 2 cut(s) 350, 356
BstX2I RGATCY 2 cut(s) 199, 205
BstYI RGATCY 2 cut(s) 199, 205
Bsu15I ATCGAT 1 cut(s) 36
BsuRI GGCC 1 cut(s) 67
BsuTUI ATCGAT 1 cut(s) 36
BtgZI GCGATG 2 cut(s) 71, 210
BtrI CACGTC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 83, 282
CfoI GCGC 3 cut(s) 134, 142, 353
Cfr10I RCCGGY 1 cut(s) 353
ClaI ATCGAT 1 cut(s) 36
CseI GACGC 1 cut(s) 421
Csp6I GTAC 2 cut(s) 296, 311
CviAII CATG 3 cut(s) 49, 377, 440
CviJI RGCY 4 cut(s) 67, 170, 284, 398
CviKI_1 RGCY 4 cut(s) 67, 170, 284, 398
CviQI GTAC 2 cut(s) 296, 311
DdeI CTNAG 1 cut(s) 27
DinI GGCGCC 1 cut(s) 352
DpnI GATC 4 cut(s) 35, 201, 207, 383
DpnII GATC 4 cut(s) 33, 199, 205, 381
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 352
EheI GGCGCC 1 cut(s) 352
FaeI CATG 3 cut(s) 52, 380, 443
FaiI YATR 5 cut(s) 50, 120, 378, 402, 441
FatI CATG 3 cut(s) 48, 376, 439
Fnu4HI GCNGC 3 cut(s) 79, 143, 437
FokI GGATG 1 cut(s) 99
Fsp4HI GCNGC 3 cut(s) 79, 143, 437
GlaI GCGC 3 cut(s) 133, 141, 352
GluI GCNGC 3 cut(s) 79, 143, 437
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 1 cut(s) 67
HapII CCGG 1 cut(s) 354
HgaI GACGC 1 cut(s) 421
HhaI GCGC 3 cut(s) 134, 142, 353
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 3 cut(s) 52, 380, 443
Hin6I GCGC 3 cut(s) 132, 140, 351
HinP1I GCGC 3 cut(s) 132, 140, 351
HinfI GANTC 4 cut(s) 23, 42, 332, 475
HpaII CCGG 1 cut(s) 354
Hpy188I TCNGA 2 cut(s) 7, 28
Hpy188III TCNNGA 3 cut(s) 203, 263, 472
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 2 cut(s) 53, 60
HpyCH4V TGCA 3 cut(s) 85, 145, 439
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 350
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 2 cut(s) 53, 60
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 3 cut(s) 52, 380, 443
HspAI GCGC 3 cut(s) 132, 140, 351
KasI GGCGCC 1 cut(s) 350
Kzo9I GATC 4 cut(s) 33, 199, 205, 381
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 6 cut(s) 95, 105, 188, 306, 321, 367
Lsp1109I GCAGC 2 cut(s) 129, 423
LweI GCATC 1 cut(s) 94
MaeII ACGT 2 cut(s) 53, 60
MalI GATC 4 cut(s) 35, 201, 207, 383
MboI GATC 4 cut(s) 33, 199, 205, 381
MboII GAAGA 5 cut(s) 209, 251, 350, 356, 401
MflI RGATCY 2 cut(s) 199, 205
MhlI GDGCHC 1 cut(s) 373
MlsI TGGCCA 1 cut(s) 67
MluCI AATT 1 cut(s) 407
MluNI TGGCCA 1 cut(s) 67
Mly113I GGCGCC 1 cut(s) 351
MlyI GAGTC 4 cut(s) 17, 51, 326, 469
MnlI CCTC 7 cut(s) 22, 174, 250, 282, 285, 327, 379
Mox20I TGGCCA 1 cut(s) 67
MscI TGGCCA 1 cut(s) 67
MslI CAYNNNNRTG 3 cut(s) 117, 190, 444
Msp20I TGGCCA 1 cut(s) 67
MspI CCGG 1 cut(s) 354
Mva1269I GAATGC 1 cut(s) 451
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 87, 350
NarI GGCGCC 1 cut(s) 351
NdeII GATC 4 cut(s) 33, 199, 205, 381
NlaIII CATG 3 cut(s) 52, 380, 443
NlaIV GGNNCC 1 cut(s) 352
NmeAIII GCCGAG 1 cut(s) 256
NspI RCATGY 1 cut(s) 380
PciI ACATGT 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 1 cut(s) 451
PkrI GCNGC 3 cut(s) 80, 144, 438
PleI GAGTC 4 cut(s) 17, 50, 326, 469
PluTI GGCGCC 1 cut(s) 354
PpsI GAGTC 4 cut(s) 17, 50, 326, 469
PscI ACATGT 1 cut(s) 376
PspN4I GGNNCC 1 cut(s) 352
PsuI RGATCY 2 cut(s) 199, 205
RsaI GTAC 2 cut(s) 297, 312
RsaNI GTAC 2 cut(s) 296, 311
RseI CAYNNNNRTG 3 cut(s) 117, 190, 444
SatI GCNGC 3 cut(s) 79, 143, 437
Sau3AI GATC 4 cut(s) 33, 199, 205, 381
ScaI AGTACT 1 cut(s) 312
SchI GAGTC 4 cut(s) 17, 51, 326, 469
SduI GDGCHC 1 cut(s) 373
SetI ASST 5 cut(s) 56, 63, 274, 286, 400
SfaNI GCATC 1 cut(s) 94
SfoI GGCGCC 1 cut(s) 352
SmiMI CAYNNNNRTG 3 cut(s) 117, 190, 444
SmlI CTYRAG 2 cut(s) 165, 477
SmoI CTYRAG 2 cut(s) 165, 477
Sse9I AATT 1 cut(s) 407
SsiI CCGC 3 cut(s) 46, 79, 336
SspDI GGCGCC 1 cut(s) 350
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 2 cut(s) 56, 63
TaqI TCGA 5 cut(s) 36, 262, 325, 373, 384
TasI AATT 1 cut(s) 407
TatI WGTACW 1 cut(s) 310
TauI GCSGC 1 cut(s) 81
TseI GCWGC 2 cut(s) 142, 436
TspDTI ATGAA 1 cut(s) 451
XceI RCATGY 1 cut(s) 380
ZrmI AGTACT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.