Rh6DG192400

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0018225
Physical Location & Seq
Forward (+)
34489724 .. 34489912
189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG192400.1

Sequence Viewer

Length: 189 bp
ATGGCTTATGTCAAATCGGCATTGAAACAGGCGATTGGGTTGCTGCCTGAGAATGCTTTGGTTGGCTTTATCTCGTTCGGGACTCAAGTGCAGGTGCGTGAATTGGGGTTCGCCGAATTGAGCAAGGTCTATGTGTTTAAGGGGAGTAAAGAGATTTCCAAAGATCAGGTGTTGGTGCAATTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

62

Amino Acids

6.8

Weight (kDa)

8.04

Isoelectric Point (pI)

8.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_trunk PF04811 2 - 57 1.9e-06 Sec23/Sec24 trunk domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018225)

Species Orthologous Gene IDs
rosa_laevigata RLG00000011421
rosa_multiflora Rmu_ssc0000008.1_g000046
rosa_rugosa Rorug01G0203400
rosa_samantha Rh1AG220700 Rh1BG186900 Rh1CG028900 Rh1CG205800 Rh1DG209100 Rh6AG196600 Rh6BG434700 Rh6DG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 82
Acc36I ACCTGC 1 cut(s) 82
AgsI TTSAA 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 30
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BfaI CTAG 1 cut(s) 187
BfuAI ACCTGC 1 cut(s) 82
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 40
BspMI ACCTGC 1 cut(s) 82
BssMI GATC 1 cut(s) 163
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 30
BveI ACCTGC 1 cut(s) 82
CviJI RGCY 2 cut(s) 5, 66
CviKI_1 RGCY 2 cut(s) 5, 66
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
FaiI YATR 2 cut(s) 9, 132
FaqI GGGAC 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 44
FspBI CTAG 1 cut(s) 187
GluI GCNGC 1 cut(s) 44
HinfI GANTC 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 79
HpyCH4V TGCA 2 cut(s) 91, 178
HpyF3I CTNAG 1 cut(s) 48
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 4 cut(s) 14, 60, 77, 152
Lsp1109I GCAGC 1 cut(s) 30
MaeI CTAG 1 cut(s) 187
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MfeI CAATTG 1 cut(s) 179
MluCI AATT 3 cut(s) 101, 116, 179
MlyI GAGTC 1 cut(s) 76
MseI TTAA 1 cut(s) 138
MunI CAATTG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 58
NdeII GATC 1 cut(s) 163
PaqCI CACCTGC 1 cut(s) 82
PctI GAATGC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 45
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 1 cut(s) 163
SchI GAGTC 1 cut(s) 76
SetI ASST 3 cut(s) 96, 129, 171
SgeI CNNG 9 cut(s) 41, 59, 85, 91, 98, 104, 110, 136, 179
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 3 cut(s) 101, 116, 179
SspMI CTAG 1 cut(s) 187
TasI AATT 3 cut(s) 101, 116, 179
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseI GCWGC 1 cut(s) 43
XspI CTAG 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.