Rh6BG434700

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0018225
Physical Location & Seq
Reverse (-)
65462627 .. 65463133
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG434700.1

Sequence Viewer

Length: 507 bp
ATGTCGGAGATGGCGAACACCGACTCTGAGGAGATCGATGGAGTCCGCATGACGTGGAACGTGTGGCCACCCACTCGCCGCCTGCATCGCCCCGATCCACTTCCACAACGACATCCCCACACTCCCCTACGCACTGCTGCGCTGCAAGACTTTCTCTGCCGTCCTCAACCCCTTCTTGCGCGTTCACTTCAACGCCAAGATCTGGATCTGCCCCTTCTGCTACCAGAGCAACCACTTCCCTCCCAACTACTCCCTAATCTTCGAGACCAACCTCCTCGGCGAGCTCTACCCCCAGTACGCCATTGTCCAGTACTCCCTCCCCTTCGATTCGACTCCGCACTCGCTGCTGGCACCGGTCTTCGTCTTTGTGCTCGACATGTCTATGATGGAGGAAGAGATGGCTTATGTCAAATCGACGCTGAAACAGGCGGCCTGAGAATGCTTTGGTTGGGTTCATCTCGTTCGGGACTCAAGTGCAGGTGCATGAATTGGGGTTCGCCGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

168

Amino Acids

18.92

Weight (kDa)

9.21

Isoelectric Point (pI)

83.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018225)

Species Orthologous Gene IDs
rosa_laevigata RLG00000011421
rosa_multiflora Rmu_ssc0000008.1_g000046
rosa_rugosa Rorug01G0203400
rosa_samantha Rh1AG220700 Rh1BG186900 Rh1CG028900 Rh1CG205800 Rh1DG209100 Rh6AG196600 Rh6BG434700 Rh6DG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 468
Acc36I ACCTGC 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 350
AccB7I CCANNNNNTGG 1 cut(s) 202
AccII CGCG 1 cut(s) 181
AciI CCGC 4 cut(s) 46, 79, 336, 429
AclWI GGATC 2 cut(s) 89, 213
AcoI YGGCCR 1 cut(s) 65
AfaI GTAC 2 cut(s) 297, 312
AfiI CCNNNNNNNGG 1 cut(s) 202
AflIII ACRYGT 2 cut(s) 60, 376
AgeI ACCGGT 1 cut(s) 353
AgsI TTSAA 1 cut(s) 191
AjiI CACGTC 1 cut(s) 54
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
Alw21I GWGCWC 2 cut(s) 286, 373
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 2 cut(s) 89, 213
AoxI GGCC 2 cut(s) 65, 430
ApeKI GCWGC 3 cut(s) 137, 142, 344
AsiGI ACCGGT 1 cut(s) 353
AspLEI GCGC 2 cut(s) 142, 181
BalI TGGCCA 1 cut(s) 67
BanI GGYRCC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 350
Bbv12I GWGCWC 2 cut(s) 286, 373
BbvI GCAGC 3 cut(s) 124, 129, 331
BccI CCATC 4 cut(s) 4, 32, 380, 392
BceAI ACGGC 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 258
BfuAI ACCTGC 1 cut(s) 468
BglII AGATCT 1 cut(s) 199
BisI GCNGC 5 cut(s) 79, 138, 143, 345, 430
BlsI GCNGC 5 cut(s) 80, 139, 144, 346, 431
BmcAI AGTACT 1 cut(s) 312
BmgBI CACGTC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 352
BmrI ACTGGG 1 cut(s) 287
BmsI GCATC 1 cut(s) 94
BmuI ACTGGG 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 455
Bsa29I ATCGAT 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 275
BsaWI WCCGGW 1 cut(s) 353
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 2 cut(s) 293, 308
Bse8I GATNNNNATC 1 cut(s) 204
BseCI ATCGAT 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMII CTCAG 2 cut(s) 18, 425
BseNI ACTGG 2 cut(s) 293, 308
BseRI GAGGAG 2 cut(s) 44, 264
BseXI GCAGC 3 cut(s) 124, 129, 331
BsgI GTGCAG 1 cut(s) 496
Bsh1236I CGCG 1 cut(s) 181
BshFI GGCC 2 cut(s) 67, 432
BshNI GGYRCC 1 cut(s) 350
BshTI ACCGGT 1 cut(s) 353
BshVI ATCGAT 1 cut(s) 36
BsiHKAI GWGCWC 2 cut(s) 286, 373
BsiSI CCGG 1 cut(s) 354
BslFI GGGAC 1 cut(s) 480
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 480
BsmI GAATGC 1 cut(s) 444
BsnI GGCC 2 cut(s) 67, 432
Bso31I GGTCTC 1 cut(s) 258
Bsp1286I GDGCHC 2 cut(s) 286, 373
Bsp143I GATC 4 cut(s) 33, 94, 199, 205
BspACI CCGC 4 cut(s) 46, 79, 336, 429
BspANI GGCC 2 cut(s) 67, 432
BspCNI CTCAG 2 cut(s) 19, 426
BspDI ATCGAT 1 cut(s) 36
BspFNI CGCG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 352
BspMI ACCTGC 1 cut(s) 468
BspPI GGATC 2 cut(s) 89, 213
BspT107I GGYRCC 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 2 cut(s) 293, 308
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 4 cut(s) 33, 94, 199, 205
Bst6I CTCTTC 1 cut(s) 388
BstAPI GCANNNNNTGC 1 cut(s) 344
BstC8I GCNNGC 3 cut(s) 83, 282, 349
BstDEI CTNAG 2 cut(s) 27, 434
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 181
BstHHI GCGC 2 cut(s) 142, 181
BstKTI GATC 4 cut(s) 36, 97, 202, 208
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 4 cut(s) 33, 94, 199, 205
BstMWI GCNNNNNNNGC 4 cut(s) 87, 217, 226, 344
BstNSI RCATGY 1 cut(s) 380
BstUI CGCG 1 cut(s) 181
BstV1I GCAGC 3 cut(s) 124, 129, 331
BstV2I GAAGAC 1 cut(s) 350
BstX2I RGATCY 2 cut(s) 199, 205
BstYI RGATCY 2 cut(s) 199, 205
Bsu15I ATCGAT 1 cut(s) 36
BsuRI GGCC 2 cut(s) 67, 432
BsuTUI ATCGAT 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 71
BtrI CACGTC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 112
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 468
Cac8I GCNNGC 3 cut(s) 83, 282, 349
CfoI GCGC 2 cut(s) 142, 181
Cfr10I RCCGGY 1 cut(s) 353
ClaI ATCGAT 1 cut(s) 36
CseI GACGC 1 cut(s) 425
Csp6I GTAC 2 cut(s) 296, 311
CspAI ACCGGT 1 cut(s) 353
CviAII CATG 3 cut(s) 49, 377, 484
CviJI RGCY 4 cut(s) 67, 284, 402, 432
CviKI_1 RGCY 4 cut(s) 67, 284, 402, 432
CviQI GTAC 2 cut(s) 296, 311
DdeI CTNAG 2 cut(s) 27, 434
DpnI GATC 4 cut(s) 35, 96, 201, 207
DpnII GATC 4 cut(s) 33, 94, 199, 205
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 1 cut(s) 388
EarI CTCTTC 1 cut(s) 388
Ecl136II GAGCTC 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 286
Eco31I GGTCTC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 286
FaeI CATG 3 cut(s) 52, 380, 487
FaiI YATR 5 cut(s) 50, 378, 384, 406, 485
FaqI GGGAC 1 cut(s) 480
FatI CATG 3 cut(s) 48, 376, 483
Fnu4HI GCNGC 5 cut(s) 79, 138, 143, 345, 430
FokI GGATG 1 cut(s) 99
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 5 cut(s) 79, 138, 143, 345, 430
GlaI GCGC 2 cut(s) 141, 180
GluI GCNGC 5 cut(s) 79, 138, 143, 345, 430
HaeIII GGCC 2 cut(s) 67, 432
HapII CCGG 1 cut(s) 354
HgaI GACGC 1 cut(s) 425
HhaI GCGC 2 cut(s) 142, 181
Hin1II CATG 3 cut(s) 52, 380, 487
Hin6I GCGC 2 cut(s) 140, 179
HinP1I GCGC 2 cut(s) 140, 179
HinfI GANTC 5 cut(s) 23, 42, 327, 332, 468
HpaII CCGG 1 cut(s) 354
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 2 cut(s) 7, 28
Hpy188III TCNNGA 3 cut(s) 203, 263, 465
Hpy8I GTNNAC 1 cut(s) 185
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 3 cut(s) 182, 224, 332
HpyCH4IV ACGT 2 cut(s) 53, 60
HpyCH4V TGCA 4 cut(s) 85, 145, 477, 483
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 217, 226, 344
HpyF3I CTNAG 2 cut(s) 27, 434
HpySE526I ACGT 2 cut(s) 53, 60
Hsp92II CATG 3 cut(s) 52, 380, 487
HspAI GCGC 2 cut(s) 140, 179
Kzo9I GATC 4 cut(s) 33, 94, 199, 205
Lsp1109I GCAGC 3 cut(s) 124, 129, 331
LweI GCATC 1 cut(s) 94
MaeII ACGT 2 cut(s) 53, 60
MalI GATC 4 cut(s) 35, 96, 201, 207
MboI GATC 4 cut(s) 33, 94, 199, 205
MboII GAAGA 3 cut(s) 251, 350, 405
MflI RGATCY 2 cut(s) 199, 205
MhlI GDGCHC 2 cut(s) 286, 373
MlsI TGGCCA 1 cut(s) 67
MluCI AATT 2 cut(s) 487, 502
MluNI TGGCCA 1 cut(s) 67
MlyI GAGTC 4 cut(s) 17, 51, 326, 462
MnlI CCTC 7 cut(s) 22, 174, 250, 282, 285, 327, 383
Mox20I TGGCCA 1 cut(s) 67
MscI TGGCCA 1 cut(s) 67
MslI CAYNNNNRTG 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 67
MspI CCGG 1 cut(s) 354
Mva1269I GAATGC 1 cut(s) 444
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 4 cut(s) 87, 217, 226, 344
NdeII GATC 4 cut(s) 33, 94, 199, 205
NlaIII CATG 3 cut(s) 52, 380, 487
NlaIV GGNNCC 1 cut(s) 352
NmeAIII GCCGAG 1 cut(s) 256
NspI RCATGY 1 cut(s) 380
PaqCI CACCTGC 1 cut(s) 468
PciI ACATGT 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 327
PflMI CCANNNNNTGG 1 cut(s) 202
PinAI ACCGGT 1 cut(s) 353
PkrI GCNGC 5 cut(s) 80, 139, 144, 346, 431
PleI GAGTC 4 cut(s) 17, 50, 326, 462
PpsI GAGTC 4 cut(s) 17, 50, 326, 462
PscI ACATGT 1 cut(s) 376
Psp124BI GAGCTC 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 352
PsuI RGATCY 2 cut(s) 199, 205
RsaI GTAC 2 cut(s) 297, 312
RsaNI GTAC 2 cut(s) 296, 311
RseI CAYNNNNRTG 1 cut(s) 381
SacI GAGCTC 1 cut(s) 286
SatI GCNGC 5 cut(s) 79, 138, 143, 345, 430
Sau3AI GATC 4 cut(s) 33, 94, 199, 205
ScaI AGTACT 1 cut(s) 312
SchI GAGTC 4 cut(s) 17, 51, 326, 462
SduI GDGCHC 2 cut(s) 286, 373
SetI ASST 5 cut(s) 56, 63, 274, 286, 482
SfaNI GCATC 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 2 cut(s) 487, 502
SsiI CCGC 4 cut(s) 46, 79, 336, 429
SstI GAGCTC 1 cut(s) 286
TaiI ACGT 2 cut(s) 56, 63
TaqI TCGA 6 cut(s) 36, 262, 325, 330, 373, 414
TasI AATT 2 cut(s) 487, 502
TatI WGTACW 1 cut(s) 310
TauI GCSGC 2 cut(s) 81, 432
TfiI GAWTC 1 cut(s) 327
TscAI CASTG 1 cut(s) 139
TseI GCWGC 3 cut(s) 137, 142, 344
TspDTI ATGAA 2 cut(s) 444, 500
TspRI CASTG 1 cut(s) 139
Van91I CCANNNNNTGG 1 cut(s) 202
XceI RCATGY 1 cut(s) 380
ZrmI AGTACT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.