Rh1AG220700

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018225
Physical Location & Seq
Reverse (-)
42214946 .. 42215149
204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG220700.1

Sequence Viewer

Length: 204 bp
ATGGCTTATGTCAAATCGATGTGGAAACAGACGATTGGGTTGCTGCATGAGAATGCTTTGGTTGGGTTCATCTCGTTCGGGACTCAAGTGCAGGTGCATGAATTAGGGTTTGCCGAATTGAGCAAGGTCTATGTGTTTAAGGGGAGTAAGGAGATTTCCAAAGATCAGGTGGTGGACCAATTGGACCAGCAAAATGGGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

67

Amino Acids

7.52

Weight (kDa)

6.02

Isoelectric Point (pI)

3.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_trunk PF04811 3 - 61 5e-06 Sec23/Sec24 trunk domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018225)

Species Orthologous Gene IDs
rosa_laevigata RLG00000011421
rosa_multiflora Rmu_ssc0000008.1_g000046
rosa_rugosa Rorug01G0203400
rosa_samantha Rh1AG220700 Rh1BG186900 Rh1CG028900 Rh1CG205800 Rh1DG209100 Rh6AG196600 Rh6BG434700 Rh6DG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 82
Acc36I ACCTGC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 175, 184
AvaII GGWCC 2 cut(s) 175, 184
BbvI GCAGC 1 cut(s) 30
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BfuAI ACCTGC 1 cut(s) 82
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
Bme18I GGWCC 2 cut(s) 175, 184
BmgT120I GGNCC 2 cut(s) 175, 184
BpuEI CTTGAG 1 cut(s) 69
Bsa29I ATCGAT 1 cut(s) 17
BseCI ATCGAT 1 cut(s) 17
BseXI GCAGC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 110
BshVI ATCGAT 1 cut(s) 17
BslFI GGGAC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 163
BspDI ATCGAT 1 cut(s) 17
BspMI ACCTGC 1 cut(s) 82
BssMI GATC 1 cut(s) 163
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 194
Bsu15I ATCGAT 1 cut(s) 17
BsuTUI ATCGAT 1 cut(s) 17
BveI ACCTGC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 175, 184
ClaI ATCGAT 1 cut(s) 17
CviAII CATG 2 cut(s) 47, 98
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eco47I GGWCC 2 cut(s) 175, 184
FaeI CATG 2 cut(s) 50, 101
FaiI YATR 5 cut(s) 9, 48, 99, 132, 202
FaqI GGGAC 1 cut(s) 94
FatI CATG 2 cut(s) 46, 97
Fnu4HI GCNGC 1 cut(s) 44
Fsp4HI GCNGC 1 cut(s) 44
GluI GCNGC 1 cut(s) 44
Hin1II CATG 2 cut(s) 50, 101
HinfI GANTC 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 175
HpyCH4V TGCA 3 cut(s) 46, 91, 97
Hsp92II CATG 2 cut(s) 50, 101
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 3 cut(s) 77, 152, 200
Lsp1109I GCAGC 1 cut(s) 30
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MfeI CAATTG 1 cut(s) 179
MluCI AATT 3 cut(s) 101, 116, 179
MlyI GAGTC 1 cut(s) 76
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 51
MunI CAATTG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 58
NdeII GATC 1 cut(s) 163
NlaIII CATG 2 cut(s) 50, 101
PaqCI CACCTGC 1 cut(s) 82
PctI GAATGC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 45
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PspPI GGNCC 2 cut(s) 175, 184
RseI CAYNNNNRTG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 2 cut(s) 175, 184
SchI GAGTC 1 cut(s) 76
SetI ASST 3 cut(s) 96, 129, 171
SgeI CNNG 9 cut(s) 59, 85, 91, 98, 104, 110, 136, 179, 199
SinI GGWCC 2 cut(s) 175, 184
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 3 cut(s) 101, 116, 179
TaqI TCGA 1 cut(s) 17
TasI AATT 3 cut(s) 101, 116, 179
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 58, 114
VpaK11BI GGWCC 2 cut(s) 175, 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.