Rh1DG209100

transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018225
Physical Location & Seq
Reverse (-)
40786705 .. 40787151
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG209100.1

Sequence Viewer

Length: 447 bp
ATGGAGTTCGCATGGCGGGGAACGTGTGGCTACCCACTCGCCGCCTGCAACTCCCCGATCTGCTTCCACAACTACATCCCCACGTTCCCCTACGCGCCTCTGTGCTGCAAGACTTGCTCCGTCATCCTCAACCCCTTCTCGCACGTTTACTTCAAAGCCAAGATCTGGATCTGCCCTTTCTGCTACCAGCGCAACCACTTCCCTCCCCACTACTCCCTAATCTTCGAGACCAACCTCCCCGGCGAGCTCTACCCCCAGTACACCACTGTCCAGTACTCCCTCCCCTTCGATTCGACTCCGCACTCGCTGCTGGCGCCAGTCTTCGTCTTCGTGCTCAACATGTGTATGATCGAGGAGGAGATGGCTTATGTCAAATCGGCGTTGAAACAGGCGATTGGGTTGCTGCCTGAGAATGCTTTGGTTGGGTTCATCTCGTTCGGGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Gelsolin Sec23_BS Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

148

Amino Acids

16.86

Weight (kDa)

6.48

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-Sec23_Sec24 PF04810 33 - 71 4.9e-13 Sec23/Sec24 zinc finger
Sec23_trunk PF04811 105 - 147 1.9e-07 Sec23/Sec24 trunk domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018225)

Species Orthologous Gene IDs
rosa_laevigata RLG00000011421
rosa_multiflora Rmu_ssc0000008.1_g000046
rosa_rugosa Rorug01G0203400
rosa_samantha Rh1AG220700 Rh1BG186900 Rh1CG028900 Rh1CG205800 Rh1DG209100 Rh6AG196600 Rh6BG434700 Rh6DG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 313
AccB7I CCANNNNNTGG 1 cut(s) 165
AccII CGCG 1 cut(s) 95
AciI CCGC 3 cut(s) 16, 42, 299
AclWI GGATC 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 314
AfaI GTAC 2 cut(s) 260, 275
AfiI CCNNNNNNNGG 1 cut(s) 165
AflIII ACRYGT 2 cut(s) 23, 339
AgsI TTSAA 2 cut(s) 154, 385
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
Alw21I GWGCWC 2 cut(s) 249, 336
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 176
ApeKI GCWGC 3 cut(s) 105, 307, 403
AspLEI GCGC 3 cut(s) 97, 192, 316
AsuC2I CCSGG 1 cut(s) 240
BanI GGYRCC 1 cut(s) 313
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 2 cut(s) 313, 319
Bbv12I GWGCWC 2 cut(s) 249, 336
BbvI GCAGC 3 cut(s) 92, 294, 390
BccI CCATC 1 cut(s) 355
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BcnI CCSGG 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 221
BfoI RGCGCY 1 cut(s) 317
BglII AGATCT 1 cut(s) 162
BisI GCNGC 4 cut(s) 42, 106, 308, 404
BlsI GCNGC 4 cut(s) 43, 107, 309, 405
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 240
BmiI GGNNCC 1 cut(s) 315
BmrFI CCNGG 1 cut(s) 240
BmrI ACTGGG 1 cut(s) 250
BmuI ACTGGG 1 cut(s) 250
BpiI GAAGAC 2 cut(s) 313, 319
BpuMI CCSGG 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 314
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse1I ACTGG 3 cut(s) 256, 271, 317
Bse8I GATNNNNATC 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 2 cut(s) 75, 123
BseJI GATNNNNATC 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 399
BseNI ACTGG 3 cut(s) 256, 271, 317
BseRI GAGGAG 2 cut(s) 368, 371
BseXI GCAGC 3 cut(s) 92, 294, 390
Bsh1236I CGCG 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 313
BsiHKAI GWGCWC 2 cut(s) 249, 336
BsiSI CCGG 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 418
Bso31I GGTCTC 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 249, 336
Bsp143I GATC 4 cut(s) 57, 162, 168, 348
BspACI CCGC 3 cut(s) 16, 42, 299
BspCNI CTCAG 1 cut(s) 400
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 313
BspTNI GGTCTC 1 cut(s) 221
BsrI ACTGG 3 cut(s) 256, 271, 317
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 4 cut(s) 57, 162, 168, 348
BssNI GRCGYC 1 cut(s) 314
Bst4CI ACNGT 1 cut(s) 268
BstACI GRCGYC 1 cut(s) 314
BstAPI GCANNNNNTGC 2 cut(s) 114, 307
BstC8I GCNNGC 3 cut(s) 46, 245, 312
BstDEI CTNAG 1 cut(s) 408
BstF5I GGATG 2 cut(s) 75, 123
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 3 cut(s) 97, 192, 316
BstKTI GATC 4 cut(s) 60, 165, 171, 351
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 4 cut(s) 57, 162, 168, 348
BstMWI GCNNNNNNNGC 5 cut(s) 114, 180, 189, 307, 313
BstNSI RCATGY 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 238
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 3 cut(s) 92, 294, 390
BstV2I GAAGAC 2 cut(s) 313, 319
BstX2I RGATCY 2 cut(s) 162, 168
BstYI RGATCY 2 cut(s) 162, 168
BtsCI GGATG 2 cut(s) 75, 123
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 3 cut(s) 46, 245, 312
CfoI GCGC 3 cut(s) 97, 192, 316
Csp6I GTAC 2 cut(s) 259, 274
CviAII CATG 2 cut(s) 12, 340
CviJI RGCY 4 cut(s) 30, 158, 247, 365
CviKI_1 RGCY 4 cut(s) 30, 158, 247, 365
CviQI GTAC 2 cut(s) 259, 274
DdeI CTNAG 1 cut(s) 408
DinI GGCGCC 1 cut(s) 315
DpnI GATC 4 cut(s) 59, 164, 170, 350
DpnII GATC 4 cut(s) 57, 162, 168, 348
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 249
Eco31I GGTCTC 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 249
EgeI GGCGCC 1 cut(s) 315
EheI GGCGCC 1 cut(s) 315
FaeI CATG 2 cut(s) 15, 343
FaiI YATR 4 cut(s) 13, 341, 347, 369
FatI CATG 2 cut(s) 11, 339
FauI CCCGC 1 cut(s) 9
Fnu4HI GCNGC 4 cut(s) 42, 106, 308, 404
FokI GGATG 2 cut(s) 62, 110
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 4 cut(s) 42, 106, 308, 404
GlaI GCGC 3 cut(s) 96, 191, 315
GluI GCNGC 4 cut(s) 42, 106, 308, 404
HaeII RGCGCY 1 cut(s) 317
HapII CCGG 1 cut(s) 240
HhaI GCGC 3 cut(s) 97, 192, 316
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 2 cut(s) 15, 343
Hin6I GCGC 3 cut(s) 95, 190, 314
HinP1I GCGC 3 cut(s) 95, 190, 314
HinfI GANTC 2 cut(s) 290, 295
HpaII CCGG 1 cut(s) 240
Hpy166II GTNNAC 2 cut(s) 148, 261
Hpy188III TCNNGA 3 cut(s) 166, 226, 439
Hpy8I GTNNAC 2 cut(s) 148, 261
HpyAV CCTTC 2 cut(s) 145, 295
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 3 cut(s) 23, 83, 144
HpyCH4V TGCA 2 cut(s) 48, 108
HpyF10VI GCNNNNNNNGC 5 cut(s) 114, 180, 189, 307, 313
HpyF3I CTNAG 1 cut(s) 408
HpySE526I ACGT 3 cut(s) 23, 83, 144
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 2 cut(s) 15, 343
HspAI GCGC 3 cut(s) 95, 190, 314
KasI GGCGCC 1 cut(s) 313
Kzo9I GATC 4 cut(s) 57, 162, 168, 348
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 3 cut(s) 92, 294, 390
MaeII ACGT 3 cut(s) 23, 83, 144
MalI GATC 4 cut(s) 59, 164, 170, 350
MboI GATC 4 cut(s) 57, 162, 168, 348
MboII GAAGA 3 cut(s) 214, 313, 319
MflI RGATCY 2 cut(s) 162, 168
MhlI GDGCHC 2 cut(s) 249, 336
Mly113I GGCGCC 1 cut(s) 314
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 7 cut(s) 108, 137, 213, 245, 290, 346, 349
MseI TTAA 1 cut(s) 445
MslI CAYNNNNRTG 1 cut(s) 344
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 240
Mva1269I GAATGC 1 cut(s) 418
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 5 cut(s) 114, 180, 189, 307, 313
NarI GGCGCC 1 cut(s) 314
NciI CCSGG 1 cut(s) 240
NdeII GATC 4 cut(s) 57, 162, 168, 348
NlaIII CATG 2 cut(s) 15, 343
NlaIV GGNNCC 1 cut(s) 315
NspI RCATGY 1 cut(s) 343
PciI ACATGT 1 cut(s) 339
PctI GAATGC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 165
PkrI GCNGC 4 cut(s) 43, 107, 309, 405
PleI GAGTC 1 cut(s) 289
PluTI GGCGCC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 289
PscI ACATGT 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 315
PsuI RGATCY 2 cut(s) 162, 168
RsaI GTAC 2 cut(s) 260, 275
RsaNI GTAC 2 cut(s) 259, 274
RseI CAYNNNNRTG 1 cut(s) 344
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 1 cut(s) 445
SatI GCNGC 4 cut(s) 42, 106, 308, 404
Sau3AI GATC 4 cut(s) 57, 162, 168, 348
ScaI AGTACT 1 cut(s) 275
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 2 cut(s) 249, 336
SetI ASST 5 cut(s) 26, 86, 147, 237, 249
SfoI GGCGCC 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 344
SsiI CCGC 3 cut(s) 16, 42, 299
SspDI GGCGCC 1 cut(s) 313
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 3 cut(s) 26, 86, 147
TaqI TCGA 4 cut(s) 225, 288, 293, 351
TatI WGTACW 2 cut(s) 258, 273
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
TscAI CASTG 1 cut(s) 271
TseI GCWGC 3 cut(s) 105, 307, 403
TspDTI ATGAA 1 cut(s) 418
TspGWI ACGGA 1 cut(s) 109
TspRI CASTG 1 cut(s) 271
Van91I CCANNNNNTGG 1 cut(s) 165
XceI RCATGY 1 cut(s) 343
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.