Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014891

Physical Location & Seq

Genomic Coordinates Reverse (-)

16887816 .. 16891639

Gene Structure 3824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3570 bp

ATGGTGAGCAGCAAGAATTCACCTTATGATTGTGGCCAGTTCATAGTTGGCATCACCACTACCACTTTTACTGTCACTACCACTTTTACCAGAGCGAAGAAGAGGTGGCGCATGGCTTATGCTGCCTTGTATGCTGTAAGGGTGATGCTATCACTTCCCAAAGAGCTTATGTACAAGAGGAGCAACTACAAGGACTACTCTGAGATTTCCGTGTATGGATCTTTCGGTGGTTTCCAAGGTCTCAAAGAAAGCCAGCAGGAGAAGGGAGATTCGAACTCTGGTCTGGAGCATGAGGCTAAAAGCTCTTCACCACTGGAGCTACAATCCCCTGCACATGATGAGTCTCGTTCTTACACTTCCCTGGAGGTGAAACCAAGCACTTCCGCTGATGAAACTGGTCACTATAGTTCTGTCCACAACGACATTGACCGTGCAGGGCTCGAAAAAATGGTAAAGGAAAAAGACGTGGCTGCTCTTGGAAAGTTTGGAGGAGTTACTGGCATAACCACTTCTCTTGAAACAAATCCTGAGTATGGGCTACCTGGCGACGACGCGGAAATCAACAGACGCCGTGTACAATTCGGCTCAAATACATACCCAAAGCCACCTTCAAAAGGGCTCCTCTATTTTGTGCTGGACGCTCTGAAAGACATGACGATTCTGATTCTATGTGTCTGTGCAGCACTTGCTCTTGCATTTGGAATCAAAGAGTATGGAGTAGAGGAAGGCTGGTATGAAGGTGGAAGTATCTTTGTAGCTGTAATCATTGTCATTGTTGTCTCAGCTCTCAGTAACTTCAGACAGGAAATCCAATTCGACAAACTGTCTAAAATAAGCAGCAACATCAACGTTGAGGTATTTAGAGACAGACAAAGACGAGAAATCTCCATCTTTGATGTTGTGGTTGGAGATGTCGTCTTCCTTAACATTGGAGATCAAATTCCTGCAGACGGGGTGTTCTTAGATGGCTATTCATTTCAAGTGGACGAGTCCAGCATGACCGGGGAGAGCGACTATGTAGAAGTTGATTCCAGAAGGAATCCCTTCCTCTTGTCTGGTGCAAAGGTGGCTGATGGTTATGGTAGAATGCTCGTCACATCAGTTGGGATGAACACTGCTTGGGGCGAAATGATGAGCTCAATTTCGCAGGAATCAAATGTAAGAACTCCATTACAAGCTCGGCTGGACAAACTTACCTCTTCTATTGGAAAGGTAGGCCTTGCTGTTGCTTTCTTAGTTCTTCTAGTCTTGTTGATTCGTTATTTCACTGGCAACACAAAAGATAAGAATGGTAATAAGGAGTATATTGGTAGCAAAACAAAAACAGATGATGTGTTGAATGCAGTAGTACGGATTGTATCTGCTGCAGTCACTATTGTGGTGGTGGCAATCCCTGAAGGCTTGCCACTGGCTGTCACACTAACACTTGCTTACTCTATGAAAAGAATGATGAAAGATCAGGCAATGGTTAGAAAGCTATCGGCTTGTGAGACAATGGGGTCAGCAACCGTTATCTGTACTGACAAAACAGGAACTCTGACACTAAACCAAATGAAAGTAACTAAGCTTTGGGTAGGCCAAGAATCTATTGCAGAAGATAATTCATCCATCACACCAAATGTTCGTGAGTTATTCTATCAAGGAGTTGGTTTGAACACAACTGGGAGTGTTTTCATGCCTCGTACAGGATCCGAACCCCAAATCTCTGGCAGCCCAACAGAAAAAGCCATACTCTATTGGGTTGTTTTAGACTTGGGTATGGACATGCAAGAACTGAAGCCCAGGTATGACATTCTTCAGGTTGAAACATTTAATTCAGACAAGAAACGAAGTGGGGTTCTTATAAAGAAAAAAGATGATAACACCATCCATGTGCACTGGAAAGGAGCTGCTGAGATGATAGTTGCAACATGCTCGAGTTATTATGAAACCAATGGAACTGTAAAGCCCTTGGATGTAGATACAAGGTCTAAACTTGAGAAAATAATCCAAGGCATGGCAGCTAGTAGCCTCCGATGCATTGCTTTCGCTCATGCCCAAATTTCAGAGGAAGAAGTTGAATACAGTGATGATGACAAGACACACCAAAAGCTCAAAGAAGATGGGCTGATCTTGCTAGGGATAGTTGGCCTCAAAGATCCATGTCGACCAGGGGTCATCGGTGCTGTGGAAGTTTGCAAGACTGCAGGTGTGGACATCAAAATGATAACTGGAGACAATATTTTCACAGCAAAAGCTATAGCTACAGAATGTGGAATACTAAAGAATGAGAACGAGGTAAAGGATGGACAAGTTGTAGAAGGAGTCGAATTTCGAAACTACACTGACGCAGAGAGAATGCAGAAGGTTGATAACATCCGTGTGATGGCAAGGTCCTCACCATTTGACAAGCTTTTAATGGTACAGTGTTTGAAGAAGAAAGGTCATGTGGTTGCAGTCACTGGTGATGGTACGAATGATGCACCTGCATTGAAAGAAGCTGATATAGGACTTTCCATGGGCATCCAAGGAACTGAGGTGGCAAAAGAAAGCTCGGATATCATCATCCTGGATGACAACTTCAATTCTGTGGCCACAGTTTTGAGATGGGGGAGATGTGTTTATAACAATATACAGAAATTCATCCAATTTCAACTAACTGTTAATGTTGCAGCTCTAGTAATCAACTTTATTGCAGCAGTTTCAGCTGGTGAAGTTCCCCTAACAGCAGTTCAATTACTTTGGGTGAATCTCATCATGGACACGCTAGGTGCTCTGGCTCTTGCTACGGAGCGGCCAACTAATGAGCTAATGGAGAGGCAGCCTGTGGGTCGGACCGCTCCACTCATAACCAATATTATGTGGAGGAATCTTTTAGCTCAAGCTCTATATCAAATAGCTGTTCTCTTGATCTTGCAGTTCCAGGGTGAGTCTATATTCAATGTCACTGCTGCGGTGAATGATACTCTGATTTTCAATACCTTTGTATTATGCCAAGTTTTCAACGAGTTCAATTCAAGAAGCATGGAGAAGAAGAATGTATTCAAAGGTATTCTCAGGAATAGGCTGTTTATTGGGATTGTGGGGATAACAATTGTTCTTCAGGTTGTGATGGTGGAGTTTCTGAAGAAATTTGCAGATACAGAAAAGTTGAATGTTCAGCAATGGGTAGTTTGTATCGTGATTGCAGCTGTATCATGGCCAATTGGTTGGGTTTTGGGTTCAATTTGGGTTAGGGTTGCAATCCAGAATTGTCTTGCCATCAACACACACGCCACGAACCTTCTTTTTCGGGAGCAAGCAAGCCAGAGCTCCCGGCCCGACCTCAAGGCTTGGGCACGAATCTCAAGTTCTGGGTCCATTGATTGTGGCCCGGGGTTTTTTGGCACTAAAAGTCAGGAGATTGAAGATTGGGGTGGAACCTCTGGCACTGGCCCCAAATCCAGAGCCGCGACAACTGGACACACGGACTTGGATTTGACTCTCAATATGGGTCTCAAATCCAAGTCCGAGTGTCTGGTGTTTGGGGCTCATGGACACTGCCATGAGCTTGAAGTTTTAAGCTTGAGTGAATTTGTAGGATTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

1190

Amino Acids

130.46

Weight (kDa)

5.78

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_N	PF00690	163 - 229	6.5e-12	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	283 - 381	3.9e-21	P-type ATPase actuator domain
Cation_ATPase	PF13246	561 - 717	1.4e-30	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	686 - 828	3.2e-11	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	899 - 1065	5.2e-45	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63380
fragaria_vesca	FvH4_2g22900
malus_domestica	MD11G1278100.v1.1
prunus_persica	Prupe.8G234200_v2.0.a1 Prupe.8G234200_v2.0.a1
pyrus_communis	pycom11g24580
rosa_chinensis	RchiOBHm_Chr6g0289831
rosa_laevigata	RLG00000012264
rosa_multiflora	Rmu_sc0032573.1_g000001 Rmu_ssc0000314.1_g000015
rosa_roxburghii	Rroxscaffold_4G00321460 Rroxscaffold_7G00177520 Rroxscaffold_7G00178050
rosa_rugosa	Rorug06G0207300
rosa_samantha	Rh6AG318800
rosa_wichuraiana	Rw6G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1844, 2604
AarI	CACCTGC	2 cut(s)	2177, 2473
AasI	GACNNNNNNGTC	1 cut(s)	1498
Acc36I	ACCTGC	2 cut(s)	2177, 2473
AccB7I	CCANNNNNTGG	1 cut(s)	1996
AccBSI	CCGCTC	2 cut(s)	2773, 2819
AccI	GTMKAC	1 cut(s)	2146
AccII	CGCG	2 cut(s)	554, 3431
AciI	CCGC	6 cut(s)	384, 554, 2773, 2817, 2933, 3429
AclI	AACGTT	1 cut(s)	849
AclWI	GGATC	4 cut(s)	226, 1683, 1696, 2132
AcoI	YGGCCR	4 cut(s)	34, 2571, 2774, 3179
AcsI	RAATTY	7 cut(s)	16, 939, 2040, 2309, 2618, 3110, 3551
AcuI	CTGAAG	6 cut(s)	781, 1416, 1781, 1796, 3065, 3125
AcyI	GRCGYC	1 cut(s)	568
AfaI	GTAC	7 cut(s)	173, 576, 1350, 1519, 1684, 2403, 2452
AfiI	CCNNNNNNNGG	6 cut(s)	533, 614, 950, 1685, 1996, 2365
AhdI	GACNNNNNGTC	2 cut(s)	823, 2153
AjiI	CACGTC	1 cut(s)	466
AjnI	CCWGG	6 cut(s)	360, 541, 1781, 2149, 2547, 2901
AjuI	GAANNNNNNNTTGG	2 cut(s)	592, 624
AleI	CACNNNNGTG	1 cut(s)	1376
Alw21I	GWGCWC	4 cut(s)	1139, 1878, 2755, 3293
Alw26I	GTCTC	7 cut(s)	245, 348, 784, 858, 1484, 2208, 3479
Alw44I	GTGCAC	1 cut(s)	1874
AlwI	GGATC	4 cut(s)	226, 1683, 1696, 2132
AlwNI	CAGNNNCTG	1 cut(s)	2441
Ama87I	CYCGRG	2 cut(s)	1915, 3352
ApaLI	GTGCAC	1 cut(s)	1874
ApoI	RAATTY	7 cut(s)	16, 939, 2040, 2309, 2618, 3110, 3551
Asp700I	GAANNNNTTC	2 cut(s)	1043, 3020
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	6 cut(s)	2373, 2814, 3297, 3336, 3350, 3413
AsuC2I	CCSGG	4 cut(s)	1003, 3295, 3353, 3354
AsuII	TTCGAA	2 cut(s)	272, 2314
AvaI	CYCGRG	2 cut(s)	1915, 3352
AvaII	GGWCC	3 cut(s)	2373, 2814, 3336
BaeGI	GKGCMC	2 cut(s)	1878, 3319
BalI	TGGCCA	3 cut(s)	36, 2573, 3181
BamHI	GGATCC	1 cut(s)	1688
BanII	GRGCYC	5 cut(s)	441, 621, 1139, 3293, 3511
BbsI	GAAGAC	1 cut(s)	910
Bbv12I	GWGCWC	4 cut(s)	1139, 1878, 2755, 3293
BceAI	ACGGC	1 cut(s)	555
BcgI	CGANNNNNNTGC	4 cut(s)	1896, 1930, 2008, 2042
BciT130I	CCWGG	6 cut(s)	362, 543, 1783, 2151, 2549, 2903
BcnI	CCSGG	4 cut(s)	1003, 3295, 3353, 3354
BcoDI	GTCTC	7 cut(s)	245, 348, 784, 858, 1484, 2208, 3479
BfaI	CTAG	5 cut(s)	1244, 2004, 2117, 2657, 2747
BfmI	CTRYAG	6 cut(s)	403, 945, 1365, 2184, 2238, 2244
BfuAI	ACCTGC	2 cut(s)	2177, 2473
Bme18I	GGWCC	3 cut(s)	2373, 2814, 3336
BmeRI	GACNNNNNGTC	2 cut(s)	823, 2153
BmeT110I	CYCGRG	2 cut(s)	1915, 3352
BmgBI	CACGTC	1 cut(s)	466
BmgT120I	GGNCC	6 cut(s)	2373, 2814, 3297, 3336, 3350, 3413
BmiI	GGNNCC	5 cut(s)	620, 1690, 3337, 3400, 3415
BmrI	ACTGGG	1 cut(s)	1671
BmsI	GCATC	5 cut(s)	60, 135, 2006, 2449, 2511
BmuI	ACTGGG	1 cut(s)	1671
BpiI	GAAGAC	1 cut(s)	910
BpmI	CTGGAG	4 cut(s)	305, 335, 383, 2232
Bpu14I	TTCGAA	2 cut(s)	272, 2314
BpuEI	CTTGAG	5 cut(s)	1997, 2844, 3290, 3310, 3565
BpuMI	CCSGG	4 cut(s)	1003, 3295, 3353, 3354
BsaHI	GRCGYC	1 cut(s)	568
BsaI	GGTCTC	2 cut(s)	245, 3479
BsaXI	ACNNNNNCTCC	2 cut(s)	900, 930
Bsc4I	CCNNNNNNNGG	6 cut(s)	533, 614, 950, 1685, 1996, 2365
Bse3DI	GCAATG	3 cut(s)	1470, 2019, 3149
BseBI	CCWGG	6 cut(s)	362, 543, 1783, 2151, 2549, 2903
BseLI	CCNNNNNNNGG	6 cut(s)	533, 614, 950, 1685, 1996, 2365
BseMI	GCAATG	3 cut(s)	1470, 2019, 3149
BseMII	CTCAG	7 cut(s)	192, 519, 795, 802, 1884, 2505, 3049
BseRI	GAGGAG	3 cut(s)	193, 504, 611
BseSI	GKGCMC	2 cut(s)	1878, 3319
BsgI	GTGCAG	3 cut(s)	315, 453, 699
Bsh1236I	CGCG	2 cut(s)	554, 3431
BsiHKAI	GWGCWC	4 cut(s)	1139, 1878, 2755, 3293
BsiHKCI	CYCGRG	2 cut(s)	1915, 3352
BsiSI	CCGG	3 cut(s)	1002, 3295, 3353
BslI	CCNNNNNNNGG	6 cut(s)	533, 614, 950, 1685, 1996, 2365
BsmAI	GTCTC	7 cut(s)	245, 348, 784, 858, 1484, 2208, 3479
BsmI	GAATGC	3 cut(s)	1092, 1345, 2343
Bso31I	GGTCTC	2 cut(s)	245, 3479
BsoBI	CYCGRG	2 cut(s)	1915, 3352
Bsp119I	TTCGAA	2 cut(s)	272, 2314
Bsp1286I	GDGCHC	8 cut(s)	441, 621, 1139, 1878, 2755, 3293, 3319, 3511
Bsp1407I	TGTACA	2 cut(s)	171, 574
Bsp143I	GATC	7 cut(s)	218, 934, 1456, 1688, 2109, 2137, 2889
Bsp19I	CCATGG	1 cut(s)	2496
BspACI	CCGC	6 cut(s)	384, 554, 2773, 2817, 2933, 3429
BspCNI	CTCAG	7 cut(s)	193, 520, 794, 801, 1885, 2506, 3048
BspFNI	CGCG	2 cut(s)	554, 3431
BspLI	GGNNCC	5 cut(s)	620, 1690, 3337, 3400, 3415
BspMAI	CTGCAG	3 cut(s)	949, 1369, 2188
BspMI	ACCTGC	2 cut(s)	2177, 2473
BspPI	GGATC	4 cut(s)	226, 1683, 1696, 2132
BspQI	GCTCTTC	1 cut(s)	310
BspT104I	TTCGAA	2 cut(s)	272, 2314
BspTNI	GGTCTC	2 cut(s)	245, 3479
BsrBI	CCGCTC	2 cut(s)	2773, 2819
BsrDI	GCAATG	3 cut(s)	1470, 2019, 3149
BsrGI	TGTACA	2 cut(s)	171, 574
BssMI	GATC	7 cut(s)	218, 934, 1456, 1688, 2109, 2137, 2889
BssNI	GRCGYC	1 cut(s)	568
BssT1I	CCWWGG	5 cut(s)	235, 1950, 1990, 2496, 2506
Bst2UI	CCWGG	6 cut(s)	362, 543, 1783, 2151, 2549, 2903
Bst4CI	ACNGT	9 cut(s)	73, 431, 825, 1510, 1942, 2066, 2406, 2578, 2641
Bst6I	CTCTTC	3 cut(s)	95, 310, 1204
BstACI	GRCGYC	1 cut(s)	568
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstAUI	TGTACA	2 cut(s)	171, 574
BstBI	TTCGAA	2 cut(s)	272, 2314
BstC8I	GCNNGC	4 cut(s)	254, 1403, 3279, 3283
BstDSI	CCRYGG	1 cut(s)	2496
BstENI	CCTNNNNNAGG	2 cut(s)	612, 1683
BstFNI	CGCG	2 cut(s)	554, 3431
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	7 cut(s)	221, 937, 1459, 1691, 2112, 2140, 2892
BstMAI	GTCTC	7 cut(s)	245, 348, 784, 858, 1484, 2208, 3479
BstMBI	GATC	7 cut(s)	218, 934, 1456, 1688, 2109, 2137, 2889
BstMWI	GCNNNNNNNGC	7 cut(s)	122, 131, 686, 1067, 2016, 2113, 2684
BstNI	CCWGG	6 cut(s)	362, 543, 1783, 2151, 2549, 2903
BstNSI	RCATGY	2 cut(s)	1768, 1914
BstSFI	CTRYAG	6 cut(s)	403, 945, 1365, 2184, 2238, 2244
BstSLI	GKGCMC	2 cut(s)	1878, 3319
BstUI	CGCG	2 cut(s)	554, 3431
BstV2I	GAAGAC	1 cut(s)	910
BstX2I	RGATCY	3 cut(s)	218, 1688, 2137
BstXI	CCANNNNNNTGG	2 cut(s)	1706, 3189
BstYI	RGATCY	3 cut(s)	218, 1688, 2137
BtgI	CCRYGG	1 cut(s)	2496
BtrI	CACGTC	1 cut(s)	466
BtsI	GCAGTG	3 cut(s)	1113, 2925, 3517
BveI	ACCTGC	2 cut(s)	2177, 2473
Cac8I	GCNNGC	4 cut(s)	254, 1403, 3279, 3283
CaiI	CAGNNNCTG	1 cut(s)	2441
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	6 cut(s)	2373, 2814, 3297, 3336, 3350, 3413
Cfr9I	CCCGGG	1 cut(s)	3352
CpoI	CGGWCCG	1 cut(s)	2814
CseI	GACGC	4 cut(s)	560, 576, 647, 2336
Csp6I	GTAC	7 cut(s)	172, 575, 1349, 1518, 1683, 2402, 2451
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CspI	CGGWCCG	1 cut(s)	2814
CviQI	GTAC	7 cut(s)	172, 575, 1349, 1518, 1683, 2402, 2451
DpnI	GATC	7 cut(s)	220, 936, 1458, 1690, 2111, 2139, 2891
DpnII	GATC	7 cut(s)	218, 934, 1456, 1688, 2109, 2137, 2889
DrdI	GACNNNNNNGTC	1 cut(s)	1498
DriI	GACNNNNNGTC	2 cut(s)	823, 2153
DseDI	GACNNNNNNGTC	1 cut(s)	1498
EaeI	YGGCCR	4 cut(s)	34, 2571, 2774, 3179
Eam1104I	CTCTTC	3 cut(s)	95, 310, 1204
Eam1105I	GACNNNNNGTC	2 cut(s)	823, 2153
EarI	CTCTTC	3 cut(s)	95, 310, 1204
Ecl136II	GAGCTC	2 cut(s)	1137, 3291
Eco130I	CCWWGG	5 cut(s)	235, 1950, 1990, 2496, 2506
Eco147I	AGGCCT	1 cut(s)	1218
Eco24I	GRGCYC	5 cut(s)	441, 621, 1139, 3293, 3511
Eco31I	GGTCTC	2 cut(s)	245, 3479
Eco32I	GATATC	1 cut(s)	2539
Eco47I	GGWCC	3 cut(s)	2373, 2814, 3336
Eco53kI	GAGCTC	2 cut(s)	1137, 3291
Eco57I	CTGAAG	6 cut(s)	781, 1416, 1781, 1796, 3065, 3125
Eco88I	CYCGRG	2 cut(s)	1915, 3352
EcoICRI	GAGCTC	2 cut(s)	1137, 3291
EcoNI	CCTNNNNNAGG	2 cut(s)	612, 1683
EcoO109I	RGGNCCY	1 cut(s)	2373
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	6 cut(s)	360, 541, 1781, 2149, 2547, 2901
EcoRV	GATATC	1 cut(s)	2539
EcoT14I	CCWWGG	5 cut(s)	235, 1950, 1990, 2496, 2506
EcoT22I	ATGCAT	1 cut(s)	2021
EcoT38I	GRGCYC	5 cut(s)	441, 621, 1139, 3293, 3511
ErhI	CCWWGG	5 cut(s)	235, 1950, 1990, 2496, 2506
FblI	GTMKAC	1 cut(s)	2146
FriOI	GRGCYC	5 cut(s)	441, 621, 1139, 3293, 3511
FspBI	CTAG	5 cut(s)	1244, 2004, 2117, 2657, 2747
GlaI	GCGC	1 cut(s)	110
GsuI	CTGGAG	4 cut(s)	305, 335, 383, 2232
HapII	CCGG	3 cut(s)	1002, 3295, 3353
HgaI	GACGC	4 cut(s)	560, 576, 647, 2336
HhaI	GCGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	568
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	2147
HindII	GTYRAC	1 cut(s)	2147
HindIII	AAGCTT	3 cut(s)	1565, 2390, 3541
HpaII	CCGG	3 cut(s)	1002, 3295, 3353
Hpy166II	GTNNAC	6 cut(s)	415, 575, 985, 1876, 2147, 2194
Hpy8I	GTNNAC	6 cut(s)	415, 575, 985, 1876, 2147, 2194
Hpy99I	CGWCG	2 cut(s)	551, 554
HpyCH4III	ACNGT	9 cut(s)	73, 431, 825, 1510, 1942, 2066, 2406, 2578, 2641
HpyCH4IV	ACGT	2 cut(s)	465, 849
HpyF10VI	GCNNNNNNNGC	7 cut(s)	122, 131, 686, 1067, 2016, 2113, 2684
HpySE526I	ACGT	2 cut(s)	465, 849
Hsp92I	GRCGYC	1 cut(s)	568
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	7 cut(s)	218, 934, 1456, 1688, 2109, 2137, 2889
LguI	GCTCTTC	1 cut(s)	310
LmnI	GCTCC	9 cut(s)	180, 286, 316, 624, 1886, 2770, 2824, 3274, 3296
LweI	GCATC	5 cut(s)	60, 135, 2006, 2449, 2511
MaeI	CTAG	5 cut(s)	1244, 2004, 2117, 2657, 2747
MaeII	ACGT	2 cut(s)	465, 849
MalI	GATC	7 cut(s)	220, 936, 1458, 1690, 2111, 2139, 2891
MbiI	CCGCTC	2 cut(s)	2773, 2819
MboI	GATC	7 cut(s)	218, 934, 1456, 1688, 2109, 2137, 2889
MfeI	CAATTG	2 cut(s)	3072, 3183
MflI	RGATCY	3 cut(s)	218, 1688, 2137
MhlI	GDGCHC	8 cut(s)	441, 621, 1139, 1878, 2755, 3293, 3319, 3511
MlsI	TGGCCA	3 cut(s)	36, 2573, 3181
MluNI	TGGCCA	3 cut(s)	36, 2573, 3181
MlyI	GAGTC	5 cut(s)	350, 998, 2313, 2918, 3454
MmeI	TCCRAC	2 cut(s)	886, 2792
Mox20I	TGGCCA	3 cut(s)	36, 2573, 3181
Mph1103I	ATGCAT	1 cut(s)	2021
MroXI	GAANNNNTTC	2 cut(s)	1043, 3020
MscI	TGGCCA	3 cut(s)	36, 2573, 3181
MseI	TTAA	5 cut(s)	924, 1812, 2396, 2643, 3539
MslI	CAYNNNNRTG	5 cut(s)	1376, 1871, 2201, 2360, 3522
Msp20I	TGGCCA	3 cut(s)	36, 2573, 3181
MspA1I	CMGCKG	3 cut(s)	386, 2687, 3170
MspI	CCGG	3 cut(s)	1002, 3295, 3353
MunI	CAATTG	2 cut(s)	3072, 3183
Mva1269I	GAATGC	3 cut(s)	1092, 1345, 2343
MvaI	CCWGG	6 cut(s)	362, 543, 1783, 2151, 2549, 2903
MvnI	CGCG	2 cut(s)	554, 3431
MwoI	GCNNNNNNNGC	7 cut(s)	122, 131, 686, 1067, 2016, 2113, 2684
NciI	CCSGG	4 cut(s)	1003, 3295, 3353, 3354
NcoI	CCATGG	1 cut(s)	2496
NdeII	GATC	7 cut(s)	218, 934, 1456, 1688, 2109, 2137, 2889
NlaIV	GGNNCC	5 cut(s)	620, 1690, 3337, 3400, 3415
NmeAIII	GCCGAG	1 cut(s)	1159
NmuCI	GTSAC	7 cut(s)	73, 398, 1093, 1369, 1414, 2437, 2923
NsiI	ATGCAT	1 cut(s)	2021
NspI	RCATGY	2 cut(s)	1768, 1914
NspV	TTCGAA	2 cut(s)	272, 2314
OliI	CACNNNNGTG	1 cut(s)	1376
PaeR7I	CTCGAG	1 cut(s)	1915
PaqCI	CACCTGC	2 cut(s)	2177, 2473
PceI	AGGCCT	1 cut(s)	1218
PciSI	GCTCTTC	1 cut(s)	310
PctI	GAATGC	3 cut(s)	1092, 1345, 2343
PdmI	GAANNNNTTC	2 cut(s)	1043, 3020
PflMI	CCANNNNNTGG	1 cut(s)	1996
PfoI	TCCNGGA	1 cut(s)	2547
PleI	GAGTC	5 cut(s)	349, 997, 2312, 2917, 3454
PpsI	GAGTC	5 cut(s)	349, 997, 2312, 2917, 3454
PpuMI	RGGWCCY	1 cut(s)	2373
PsiI	TTATAA	2 cut(s)	1844, 2604
Psp124BI	GAGCTC	2 cut(s)	1139, 3293
Psp1406I	AACGTT	1 cut(s)	849
Psp5II	RGGWCCY	1 cut(s)	2373
Psp6I	CCWGG	6 cut(s)	360, 541, 1781, 2149, 2547, 2901
PspGI	CCWGG	6 cut(s)	360, 541, 1781, 2149, 2547, 2901
PspN4I	GGNNCC	5 cut(s)	620, 1690, 3337, 3400, 3415
PspPI	GGNCC	6 cut(s)	2373, 2814, 3297, 3336, 3350, 3413
PspPPI	RGGWCCY	1 cut(s)	2373
PspXI	VCTCGAGB	1 cut(s)	1915
PstI	CTGCAG	3 cut(s)	949, 1369, 2188
PstNI	CAGNNNCTG	1 cut(s)	2441
PsuI	RGATCY	3 cut(s)	218, 1688, 2137
PvuII	CAGCTG	2 cut(s)	2687, 3170
RsaI	GTAC	7 cut(s)	173, 576, 1350, 1519, 1684, 2403, 2452
RsaNI	GTAC	7 cut(s)	172, 575, 1349, 1518, 1683, 2402, 2451
RseI	CAYNNNNRTG	5 cut(s)	1376, 1871, 2201, 2360, 3522
Rsr2I	CGGWCCG	1 cut(s)	2814
RsrII	CGGWCCG	1 cut(s)	2814
SacI	GAGCTC	2 cut(s)	1139, 3293
SalI	GTCGAC	1 cut(s)	2145
SapI	GCTCTTC	1 cut(s)	310
SaqAI	TTAA	5 cut(s)	924, 1812, 2396, 2643, 3539
Sau3AI	GATC	7 cut(s)	218, 934, 1456, 1688, 2109, 2137, 2889
Sau96I	GGNCC	6 cut(s)	2373, 2814, 3297, 3336, 3350, 3413
SchI	GAGTC	5 cut(s)	350, 998, 2313, 2918, 3454
SduI	GDGCHC	8 cut(s)	441, 621, 1139, 1878, 2755, 3293, 3319, 3511
SfaNI	GCATC	5 cut(s)	60, 135, 2006, 2449, 2511
SfcI	CTRYAG	6 cut(s)	403, 945, 1365, 2184, 2238, 2244
Sfr274I	CTCGAG	1 cut(s)	1915
SfuI	TTCGAA	2 cut(s)	272, 2314
SinI	GGWCC	3 cut(s)	2373, 2814, 3336
SlaI	CTCGAG	1 cut(s)	1915
SmaI	CCCGGG	1 cut(s)	3354
SmiMI	CAYNNNNRTG	5 cut(s)	1376, 1871, 2201, 2360, 3522
SmlI	CTYRAG	6 cut(s)	1915, 1976, 2859, 3305, 3325, 3544
SmoI	CTYRAG	6 cut(s)	1915, 1976, 2859, 3305, 3325, 3544
SseBI	AGGCCT	1 cut(s)	1218
SsiI	CCGC	6 cut(s)	384, 554, 2773, 2817, 2933, 3429
SspI	AATATT	2 cut(s)	2221, 2836
SspMI	CTAG	5 cut(s)	1244, 2004, 2117, 2657, 2747
SstI	GAGCTC	2 cut(s)	1139, 3293
StuI	AGGCCT	1 cut(s)	1218
StyI	CCWWGG	5 cut(s)	235, 1950, 1990, 2496, 2506
TaaI	ACNGT	9 cut(s)	73, 431, 825, 1510, 1942, 2066, 2406, 2578, 2641
TaiI	ACGT	2 cut(s)	468, 852
TaqI	TCGA	7 cut(s)	272, 441, 816, 1916, 2146, 2307, 2314
TatI	WGTACW	3 cut(s)	171, 574, 1517
TauI	GCSGC	2 cut(s)	2776, 3431
Tru1I	TTAA	5 cut(s)	924, 1812, 2396, 2643, 3539
Tru9I	TTAA	5 cut(s)	924, 1812, 2396, 2643, 3539
TseFI	GTSAC	7 cut(s)	73, 398, 1093, 1369, 1414, 2437, 2923
Tsp45I	GTSAC	7 cut(s)	73, 398, 1093, 1369, 1414, 2437, 2923
TspGWI	ACGGA	5 cut(s)	199, 1366, 2348, 2783, 3461
TspMI	CCCGGG	1 cut(s)	3352
Van91I	CCANNNNNTGG	1 cut(s)	1996
VneI	GTGCAC	1 cut(s)	1874
VpaK11BI	GGWCC	3 cut(s)	2373, 2814, 3336
XagI	CCTNNNNNAGG	2 cut(s)	612, 1683
XapI	RAATTY	7 cut(s)	16, 939, 2040, 2309, 2618, 3110, 3551
XceI	RCATGY	2 cut(s)	1768, 1914
XcmI	CCANNNNNNNNNTGG	1 cut(s)	44
XhoI	CTCGAG	1 cut(s)	1915
XmaI	CCCGGG	1 cut(s)	3352
XmiI	GTMKAC	1 cut(s)	2146
XmnI	GAANNNNTTC	2 cut(s)	1043, 3020
XspI	CTAG	5 cut(s)	1244, 2004, 2117, 2657, 2747
Zsp2I	ATGCAT	1 cut(s)	2021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.