Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014891

Physical Location & Seq

Genomic Coordinates Reverse (-)

33051035 .. 33051631

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0207300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGATTAGAAAATCCAGAGCAGAGACAAGAACAGGTTGCTGTGCTGAACTTTGTATTAAATTGAATAGGGGAAACAATAAGTTCTTTGTTACCCATTTTGTTGAAGAGCACAATCATCCTCTTGTGGTGAAAGAATGTTCCCACATGCTTCCTTCACAACGGAAAGTACAAGACTCTCAAGGCATTGATATAGACTTAGCACACGATTTTGGAATTGGTGTCACATCTCTATATGAGTTGATGGGTAAGCAAGTAGGTGGAAGAGATACTGTTGGGTATACAAAACAAGATATAAAAAATTACCTTAGATCAAAGAGACAAAGAAGCTTGGAGTATGGAGAAGGCGGATATATTATGAAATATTTTTCAGACCAAACACTGGTAAACCTTTCATTCTACCATGCGATGCAATTAGACAGCGAGGAGCAAATAACAAACTTATTTTGGGCAGATGCTAAAATGATCATTGATTATGGCCAATTTGGGGATGTTGTTAGTTTTGATACGACATACAAGATTAACAATCTAATCGACCTCTTGCTGTGTTTGTTGGATTCAATCACCACCGCTAGACTATTGTATTTGGGGTGGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

198

Amino Acids

22.75

Weight (kDa)

6.3

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	3 - 42	3.6e-08	FAR1 DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63380
fragaria_vesca	FvH4_2g22900
malus_domestica	MD11G1278100.v1.1
prunus_persica	Prupe.8G234200_v2.0.a1 Prupe.8G234200_v2.0.a1
pyrus_communis	pycom11g24580
rosa_chinensis	RchiOBHm_Chr6g0289831
rosa_laevigata	RLG00000012264
rosa_multiflora	Rmu_sc0032573.1_g000001 Rmu_ssc0000314.1_g000015
rosa_roxburghii	Rroxscaffold_4G00321460 Rroxscaffold_7G00177520 Rroxscaffold_7G00178050
rosa_rugosa	Rorug06G0207300
rosa_samantha	Rh6AG318800
rosa_wichuraiana	Rw6G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	379
AccI	GTMKAC	1 cut(s)	278
AciI	CCGC	2 cut(s)	345, 567
AcoI	YGGCCR	1 cut(s)	475
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	2 cut(s)	379, 484
AgsI	TTSAA	3 cut(s)	64, 104, 558
AluBI	AGCT	1 cut(s)	327
AluI	AGCT	1 cut(s)	327
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	17, 310
AoxI	GGCC	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	139, 553
BalI	TGGCCA	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	1 cut(s)	235
BclI	TGATCA	1 cut(s)	462
BcoDI	GTCTC	2 cut(s)	17, 310
BfaI	CTAG	1 cut(s)	570
BmsI	GCATC	2 cut(s)	396, 442
BpuEI	CTTGAG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 484
Bse1I	ACTGG	1 cut(s)	384
BseGI	GGATG	2 cut(s)	115, 493
BseLI	CCNNNNNNNGG	2 cut(s)	379, 484
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	379, 484
BsmAI	GTCTC	2 cut(s)	17, 310
BsnI	GGCC	1 cut(s)	477
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	308, 462
BspACI	CCGC	2 cut(s)	345, 567
BspANI	GGCC	1 cut(s)	477
BspQI	GCTCTTC	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	384
BssMI	GATC	2 cut(s)	308, 462
BssNAI	GTATAC	1 cut(s)	279
Bst1107I	GTATAC	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	2 cut(s)	99, 256
BstDEI	CTNAG	2 cut(s)	196, 305
BstF5I	GGATG	2 cut(s)	115, 493
BstKTI	GATC	2 cut(s)	311, 465
BstMAI	GTCTC	2 cut(s)	17, 310
BstMBI	GATC	2 cut(s)	308, 462
BstNSI	RCATGY	1 cut(s)	148
BstZ17I	GTATAC	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	477
BtgZI	GCGATG	1 cut(s)	419
BtsCI	GGATG	2 cut(s)	115, 493
BtsIMutI	CAGTG	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	2 cut(s)	145, 401
CviJI	RGCY	3 cut(s)	327, 477, 592
CviKI_1	RGCY	3 cut(s)	327, 477, 592
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	2 cut(s)	196, 305
DpnI	GATC	2 cut(s)	310, 464
DpnII	GATC	2 cut(s)	308, 462
EaeI	YGGCCR	1 cut(s)	475
Eam1104I	CTCTTC	2 cut(s)	99, 256
EarI	CTCTTC	2 cut(s)	99, 256
EciI	GGCGGA	1 cut(s)	360
FaeI	CATG	2 cut(s)	148, 404
FatI	CATG	2 cut(s)	144, 400
FbaI	TGATCA	1 cut(s)	462
FblI	GTMKAC	1 cut(s)	278
FokI	GGATG	2 cut(s)	102, 500
FspBI	CTAG	1 cut(s)	570
HaeIII	GGCC	1 cut(s)	477
Hin1II	CATG	2 cut(s)	148, 404
HindIII	AAGCTT	1 cut(s)	325
HinfI	GANTC	2 cut(s)	173, 554
HphI	GGTGA	2 cut(s)	139, 553
Hpy166II	GTNNAC	2 cut(s)	279, 385
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	1 cut(s)	15
Hpy8I	GTNNAC	2 cut(s)	279, 385
HpyAV	CCTTC	2 cut(s)	162, 335
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	1 cut(s)	409
HpyF3I	CTNAG	2 cut(s)	196, 305
Hsp92II	CATG	2 cut(s)	148, 404
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	2 cut(s)	308, 462
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	1 cut(s)	424
LpnPI	CCDG	3 cut(s)	18, 28, 365
LweI	GCATC	2 cut(s)	396, 442
MaeI	CTAG	1 cut(s)	570
MaeIII	GTNAC	2 cut(s)	88, 220
MalI	GATC	2 cut(s)	310, 464
MboI	GATC	2 cut(s)	308, 462
MboII	GAAGA	2 cut(s)	116, 273
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	5 cut(s)	59, 213, 298, 410, 479
MluNI	TGGCCA	1 cut(s)	477
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	531
MnlI	CCTC	3 cut(s)	129, 415, 545
Mox20I	TGGCCA	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	3 cut(s)	57, 519, 595
Msp20I	TGGCCA	1 cut(s)	477
NdeII	GATC	2 cut(s)	308, 462
NlaIII	CATG	2 cut(s)	148, 404
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	554
PflMI	CCANNNNNTGG	1 cut(s)	379
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	57, 519, 595
Sau3AI	GATC	2 cut(s)	308, 462
SchI	GAGTC	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	6 cut(s)	37, 259, 306, 329, 390, 537
SfaNI	GCATC	2 cut(s)	396, 442
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
Sse9I	AATT	5 cut(s)	59, 213, 298, 410, 479
SsiI	CCGC	2 cut(s)	345, 567
SspI	AATATT	1 cut(s)	362
SspMI	CTAG	1 cut(s)	570
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	531
TasI	AATT	5 cut(s)	59, 213, 298, 410, 479
TatI	WGTACW	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	3 cut(s)	57, 519, 595
Tru9I	TTAA	3 cut(s)	57, 519, 595
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	371, 381
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	379
XceI	RCATGY	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	278
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.