RLG00000013938

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013608
Physical Location & Seq
Reverse (-)
44517477 .. 44518019
543 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013938

Sequence Viewer

Length: 378 bp
ATGAGTACCATGGTTTCTGAACTGATTTTATTGATTCCCACCGTCATAGTCCTTTGTGTCATAATTGGTGTACTTGAAGAGAAAATCAGAGTCGCCAGACCTGCATTCGCCCCCGTCATAGATATCGCCGCGAGTATACTCATGATACTAGTTATTTTTCTTTTCCGCACCATTGCGCTTGATACCATTTCCATTGTTGAACCCTCCCTTGATTACAGGATCGTAACAGGCCTCGGATATGGATTTTATATCCCAATGTTACCCTGCGTGTATGACATAATAAGCACCGTGCCAAGAGCCCTGAAGGGTATGCGATTTTCAGTTATCAAATGGACCAAGAAAAGGGGTTTTGCAGAGGCGAGTGTGCTATTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.85

Weight (kDa)

9.06

Isoelectric Point (pI)

25.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 136
AccII CGCG 1 cut(s) 131
AciI CCGC 2 cut(s) 129, 166
AclWI GGATC 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 2 cut(s) 7, 72
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 2 cut(s) 77, 200
AhlI ACTAGT 1 cut(s) 148
AlwI GGATC 1 cut(s) 227
AoxI GGCC 1 cut(s) 229
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 333
AvaII GGWCC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 301
BcuI ACTAGT 1 cut(s) 148
BfaI CTAG 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 333
BmgT120I GGNCC 1 cut(s) 333
BsaJI CCNNGG 2 cut(s) 9, 232
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 9, 232
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMI GCAATG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 1 cut(s) 231
BslI CCNNNNNNNGG 1 cut(s) 342
BsmI GAATGC 1 cut(s) 104
BsnI GGCC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 301
Bsp143I GATC 1 cut(s) 219
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 2 cut(s) 129, 166
BspANI GGCC 1 cut(s) 231
BspFNI CGCG 1 cut(s) 131
BspHI TCATGA 1 cut(s) 141
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 171
BssECI CCNNGG 2 cut(s) 9, 232
BssMI GATC 1 cut(s) 219
BssNAI GTATAC 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 9
Bst1107I GTATAC 1 cut(s) 137
Bst4CI ACNGT 2 cut(s) 43, 289
Bst6I CTCTTC 1 cut(s) 72
BstDSI CCRYGG 1 cut(s) 9
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 1 cut(s) 222
BstMBI GATC 1 cut(s) 219
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstUI CGCG 1 cut(s) 131
BstZ17I GTATAC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 9
BveI ACCTGC 1 cut(s) 109
CciI TCATGA 1 cut(s) 141
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 333
Csp6I GTAC 2 cut(s) 6, 71
CviAII CATG 2 cut(s) 10, 142
CviJI RGCY 2 cut(s) 231, 299
CviKI_1 RGCY 2 cut(s) 231, 299
CviQI GTAC 2 cut(s) 6, 71
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 9
Eco147I AGGCCT 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 301
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 323
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 13, 145
FatI CATG 2 cut(s) 9, 141
FblI GTMKAC 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 129
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 177
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 1 cut(s) 231
HhaI GCGC 1 cut(s) 178
Hin1II CATG 2 cut(s) 13, 145
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 2 cut(s) 34, 90
Hpy166II GTNNAC 2 cut(s) 71, 137
Hpy188I TCNGA 3 cut(s) 19, 89, 236
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 2 cut(s) 71, 137
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 2 cut(s) 43, 289
HpyCH4V TGCA 2 cut(s) 104, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
Hsp92II CATG 2 cut(s) 13, 145
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 1 cut(s) 219
LpnPI CCDG 6 cut(s) 109, 114, 202, 213, 277, 314
MaeI CTAG 1 cut(s) 149
MaeIII GTNAC 2 cut(s) 223, 258
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 301
MluCI AATT 1 cut(s) 63
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 3 cut(s) 214, 242, 349
Mva1269I GAATGC 1 cut(s) 104
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 101
NcoI CCATGG 1 cut(s) 9
NdeII GATC 1 cut(s) 219
NlaIII CATG 2 cut(s) 13, 145
PagI TCATGA 1 cut(s) 141
PceI AGGCCT 1 cut(s) 231
PctI GAATGC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 333
RsaI GTAC 2 cut(s) 7, 72
RsaNI GTAC 2 cut(s) 6, 71
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 333
SchI GAGTC 1 cut(s) 99
SduI GDGCHC 1 cut(s) 301
SetI ASST 1 cut(s) 103
SinI GGWCC 1 cut(s) 333
SpeI ACTAGT 1 cut(s) 148
Sse9I AATT 1 cut(s) 63
SseBI AGGCCT 1 cut(s) 231
SsiI CCGC 2 cut(s) 129, 166
SspMI CTAG 1 cut(s) 149
StuI AGGCCT 1 cut(s) 231
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 43, 289
TasI AATT 1 cut(s) 63
TatI WGTACW 1 cut(s) 70
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 333
XmiI GTMKAC 1 cut(s) 136
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.