Rh6BG163400

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013608
Physical Location & Seq
Forward (+)
26551408 .. 26552016
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG163400.1

Sequence Viewer

Length: 609 bp
ATGAATCCTGTGGTTTCTGCACTGATTTTATTGGTTCCCACCGGCGTAGTCCTCTGGGTCATAGTTGGCGTACTCGAAGAGAAAATCAGAGACGCCAGACCTGGATTCGCCCCCGCCATAGATATCGCCGTGAGTATACTCACGATACTAGTTATTTTTCTTTTCCGCACCATTGCGCTTGGTACCATTTCCATTGTTGAACCCTCCCTCGATTACAGGGTCGTAACAGGCCTCGGCTATGGATTTTATATCCCAATGTTACCCTGGGTATATGACATAATAACCACCGTTGGCTCATGTTGTTCAAGAACAATGGTTAAACTGATGCACAATGCTACTTTTCTTATGGTGACAATCGGTGCCAAGAGCCCTGAAGGCTATGCGATTTTCAATTATCAAGTGGACCAAGAAAAGGGGTTTTGCAGAGGCGAGTGTGCCATTTGCTTGATGGAGTACGAGACAAAAGACAAGTGTGCATTGTTAGATAAATGTGGACATACGTTTCACCACAAATGTCTATATGAGAATTTGGCTATGTCTACCCGATGTCCGCTTTGTCGTCAAAGTATTAAAGATAGTAAGGAACTCCATGCAGCTGCCAGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

202

Amino Acids

22.37

Weight (kDa)

6.92

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 141 - 187 9.3e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 144 - 187 1.2e-12 Ring finger domain
zf-RING_11 PF17123 144 - 173 6.5e-08 RING-like zinc finger
zf-C3HC4_2 PF13923 144 - 186 1.9e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 144 - 188 2.5e-06 zinc-RING finger domain
zf-RING_UBOX PF13445 145 - 184 1.6e-07 RING-type zinc-finger
zf-C3HC4 PF00097 145 - 186 9e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 182
AccB1I GGYRCC 2 cut(s) 182, 359
AccI GTMKAC 2 cut(s) 136, 539
AciI CCGC 3 cut(s) 114, 166, 551
AcsI RAATTY 1 cut(s) 526
AcuI CTGAAG 1 cut(s) 393
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 3 cut(s) 72, 184, 455
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 3 cut(s) 200, 306, 391
AhlI ACTAGT 1 cut(s) 148
AjnI CCWGG 2 cut(s) 100, 263
AluBI AGCT 1 cut(s) 596
AluI AGCT 1 cut(s) 596
Alw26I GTCTC 2 cut(s) 84, 452
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 2 cut(s) 593, 596
ApoI RAATTY 1 cut(s) 526
Asp718I GGTACC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 403
AsuHPI GGTGA 2 cut(s) 361, 497
AvaII GGWCC 1 cut(s) 403
BanI GGYRCC 2 cut(s) 182, 359
BanII GRGCYC 1 cut(s) 371
BbvI GCAGC 2 cut(s) 583, 605
BccI CCATC 1 cut(s) 442
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 2 cut(s) 102, 265
BcoDI GTCTC 2 cut(s) 84, 452
BcuI ACTAGT 1 cut(s) 148
BfaI CTAG 1 cut(s) 149
BglI GCCNNNNNGGC 1 cut(s) 375
BisI GCNGC 2 cut(s) 594, 597
BlsI GCNGC 2 cut(s) 595, 598
Bme1390I CCNGG 2 cut(s) 102, 265
Bme18I GGWCC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 403
BmiI GGNNCC 3 cut(s) 36, 184, 361
BmrFI CCNGG 2 cut(s) 102, 265
BmsI GCATC 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 3 cut(s) 232, 263, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 600
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 2 cut(s) 102, 265
BseDI CCNNGG 3 cut(s) 232, 263, 264
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 600
BseXI GCAGC 2 cut(s) 583, 605
BshFI GGCC 1 cut(s) 231
BshNI GGYRCC 2 cut(s) 182, 359
BsiSI CCGG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 2 cut(s) 84, 452
BsmBI CGTCTC 1 cut(s) 84
BsnI GGCC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 371
BspACI CCGC 3 cut(s) 114, 166, 551
BspANI GGCC 1 cut(s) 231
BspLI GGNNCC 3 cut(s) 36, 184, 361
BspT107I GGYRCC 2 cut(s) 182, 359
BsrDI GCAATG 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 1 cut(s) 600
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 3 cut(s) 232, 263, 264
BssNAI GTATAC 1 cut(s) 137
BssNI GRCGYC 1 cut(s) 93
Bst1107I GTATAC 1 cut(s) 137
Bst2UI CCWGG 2 cut(s) 102, 265
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 72
BstACI GRCGYC 1 cut(s) 93
BstHHI GCGC 1 cut(s) 178
BstMAI GTCTC 2 cut(s) 84, 452
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNI CCWGG 2 cut(s) 102, 265
BstSCI CCNGG 2 cut(s) 100, 263
BstV1I GCAGC 2 cut(s) 583, 605
BstZ17I GTATAC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 20
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 403
CseI GACGC 1 cut(s) 101
Csp6I GTAC 3 cut(s) 71, 183, 454
CviAII CATG 2 cut(s) 297, 590
CviJI RGCY 7 cut(s) 231, 237, 294, 369, 378, 533, 596
CviKI_1 RGCY 7 cut(s) 231, 237, 294, 369, 378, 533, 596
CviQI GTAC 3 cut(s) 71, 183, 454
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco147I AGGCCT 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 371
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 393
EcoRII CCWGG 2 cut(s) 100, 263
EcoRV GATATC 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 371
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 2 cut(s) 300, 593
FatI CATG 2 cut(s) 296, 589
FauI CCCGC 1 cut(s) 121
FblI GTMKAC 2 cut(s) 136, 539
Fnu4HI GCNGC 2 cut(s) 594, 597
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 2 cut(s) 594, 597
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 177
GluI GCNGC 2 cut(s) 594, 597
HaeIII GGCC 1 cut(s) 231
HapII CCGG 1 cut(s) 42
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 178
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 2 cut(s) 300, 593
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 2 cut(s) 4, 105
HpaII CCGG 1 cut(s) 42
HphI GGTGA 2 cut(s) 361, 497
Hpy166II GTNNAC 4 cut(s) 137, 403, 494, 540
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 2 cut(s) 142, 306
Hpy8I GTNNAC 4 cut(s) 137, 403, 494, 540
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 500
HpyCH4V TGCA 5 cut(s) 20, 328, 423, 476, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
HpySE526I ACGT 1 cut(s) 500
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 2 cut(s) 300, 593
HspAI GCGC 1 cut(s) 176
KpnI GGTACC 1 cut(s) 186
Lsp1109I GCAGC 2 cut(s) 583, 605
LweI GCATC 1 cut(s) 315
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 500
MaeIII GTNAC 3 cut(s) 223, 258, 349
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 371
MluCI AATT 2 cut(s) 391, 526
MnlI CCTC 5 cut(s) 62, 214, 218, 242, 419
MseI TTAA 2 cut(s) 318, 570
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 1 cut(s) 42
MspR9I CCNGG 2 cut(s) 102, 265
MvaI CCWGG 2 cut(s) 102, 265
MwoI GCNNNNNNNGC 1 cut(s) 375
NlaIII CATG 2 cut(s) 300, 593
NlaIV GGNNCC 3 cut(s) 36, 184, 361
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 1 cut(s) 349
PasI CCCWGGG 1 cut(s) 264
PceI AGGCCT 1 cut(s) 231
PfeI GAWTC 2 cut(s) 4, 105
PkrI GCNGC 2 cut(s) 595, 598
Psp6I CCWGG 2 cut(s) 100, 263
PspGI CCWGG 2 cut(s) 100, 263
PspN4I GGNNCC 3 cut(s) 36, 184, 361
PspPI GGNCC 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 3 cut(s) 72, 184, 455
RsaNI GTAC 3 cut(s) 71, 183, 454
SaqAI TTAA 2 cut(s) 318, 570
SatI GCNGC 2 cut(s) 594, 597
Sau96I GGNCC 1 cut(s) 403
ScrFI CCNGG 2 cut(s) 102, 265
SduI GDGCHC 1 cut(s) 371
SetI ASST 3 cut(s) 103, 503, 598
SfaNI GCATC 1 cut(s) 315
SgrAI CRCCGGYG 1 cut(s) 41
SinI GGWCC 1 cut(s) 403
SpeI ACTAGT 1 cut(s) 148
Sse9I AATT 2 cut(s) 391, 526
SseBI AGGCCT 1 cut(s) 231
SsiI CCGC 3 cut(s) 114, 166, 551
SspMI CTAG 1 cut(s) 149
StuI AGGCCT 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 100, 263
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 503
TaqI TCGA 2 cut(s) 75, 210
TasI AATT 2 cut(s) 391, 526
TfiI GAWTC 2 cut(s) 4, 105
Tru1I TTAA 2 cut(s) 318, 570
Tru9I TTAA 2 cut(s) 318, 570
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 2 cut(s) 593, 596
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 403
XapI RAATTY 1 cut(s) 526
XcmI CCANNNNNNNNNTGG 2 cut(s) 261, 445
XmiI GTMKAC 2 cut(s) 136, 539
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.