Rmu_sc0001839.1_g000005

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001839.1
OG0013608
Physical Location & Seq
Reverse (-)
31797 .. 32408
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001839.1_g000005.1.cds

Sequence Viewer

Length: 612 bp
atgaatcctgtgatttctgcactgattttattggttcccacaggcgtagtcctctgggtcacagttggcgtactcgaagagaaaatcagagtcgccagacctggattcgcccccgccatagatatcgccgtgagtatactcacgatactagttatttttcttttccgcaccattgcgcttggtaccatttccattgttgaaccctccctcgattacaggatcgtaacaggcctcggctatggattttatatcccaatgttaccctgggtatatgacataataaccaccgttggctcatgttgttcaagaacaatggttaaactgatgcacaatgctacttttcttacggtgacattaatcggtgccaagagccctgaaggctatgcgattttcaattatcaagtggaccgagaaaaggggttttgcagaggcgagtgtgccatttgcttgatggagtacgagacaaaagacaagtgtgcattgttagataaatgtggacatacgtttcaccacaaatgtctatatgagaatttggctatgtctacccgatgtcctctttgtcgtcaaagtatcaaagatagtaaggaactccatgcagctgccagtcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

203

Amino Acids

22.48

Weight (kDa)

8.02

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 182
AccB1I GGYRCC 2 cut(s) 182, 362
AccI GTMKAC 2 cut(s) 136, 542
AciI CCGC 2 cut(s) 114, 166
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 529
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 3 cut(s) 72, 184, 458
AfiI CCNNNNNNNGG 1 cut(s) 415
AgsI TTSAA 3 cut(s) 200, 306, 394
AhlI ACTAGT 1 cut(s) 148
AjnI CCWGG 2 cut(s) 100, 263
AluBI AGCT 1 cut(s) 599
AluI AGCT 1 cut(s) 599
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 1 cut(s) 227
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 2 cut(s) 596, 599
ApoI RAATTY 1 cut(s) 529
AseI ATTAAT 1 cut(s) 356
Asp718I GGTACC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 406
AsuHPI GGTGA 2 cut(s) 361, 500
AvaII GGWCC 1 cut(s) 406
BanI GGYRCC 2 cut(s) 182, 362
BanII GRGCYC 1 cut(s) 374
BbvI GCAGC 2 cut(s) 586, 608
BccI CCATC 1 cut(s) 445
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 2 cut(s) 102, 265
BcoDI GTCTC 1 cut(s) 455
BcuI ACTAGT 1 cut(s) 148
BfaI CTAG 1 cut(s) 149
BglI GCCNNNNNGGC 1 cut(s) 378
BisI GCNGC 2 cut(s) 597, 600
BlsI GCNGC 2 cut(s) 598, 601
Bme1390I CCNGG 2 cut(s) 102, 265
Bme18I GGWCC 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 3 cut(s) 36, 184, 364
BmrFI CCNGG 2 cut(s) 102, 265
BmsI GCATC 1 cut(s) 315
BsaJI CCNNGG 3 cut(s) 232, 263, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 603
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 2 cut(s) 102, 265
BseDI CCNNGG 3 cut(s) 232, 263, 264
BseLI CCNNNNNNNGG 1 cut(s) 415
BseMI GCAATG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 603
BseXI GCAGC 2 cut(s) 586, 608
BshFI GGCC 1 cut(s) 231
BshNI GGYRCC 2 cut(s) 182, 362
BslI CCNNNNNNNGG 1 cut(s) 415
BsmAI GTCTC 1 cut(s) 455
BsnI GGCC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 1 cut(s) 219
BspACI CCGC 2 cut(s) 114, 166
BspANI GGCC 1 cut(s) 231
BspLI GGNNCC 3 cut(s) 36, 184, 364
BspPI GGATC 1 cut(s) 227
BspT107I GGYRCC 2 cut(s) 182, 362
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 1 cut(s) 603
BssECI CCNNGG 3 cut(s) 232, 263, 264
BssMI GATC 1 cut(s) 219
BssNAI GTATAC 1 cut(s) 137
Bst1107I GTATAC 1 cut(s) 137
Bst2UI CCWGG 2 cut(s) 102, 265
Bst4CI ACNGT 3 cut(s) 64, 289, 349
Bst6I CTCTTC 1 cut(s) 72
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 1 cut(s) 219
BstMWI GCNNNNNNNGC 1 cut(s) 378
BstNI CCWGG 2 cut(s) 102, 265
BstSCI CCNGG 2 cut(s) 100, 263
BstV1I GCAGC 2 cut(s) 586, 608
BstZ17I GTATAC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 20
CfoI GCGC 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 406
Csp6I GTAC 3 cut(s) 71, 183, 457
CviAII CATG 2 cut(s) 297, 593
CviJI RGCY 7 cut(s) 231, 237, 294, 372, 381, 536, 599
CviKI_1 RGCY 7 cut(s) 231, 237, 294, 372, 381, 536, 599
CviQI GTAC 3 cut(s) 71, 183, 457
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco147I AGGCCT 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 374
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 396
EcoRII CCWGG 2 cut(s) 100, 263
EcoRV GATATC 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 374
FaeI CATG 2 cut(s) 300, 596
FatI CATG 2 cut(s) 296, 592
FauI CCCGC 1 cut(s) 121
FblI GTMKAC 2 cut(s) 136, 542
Fnu4HI GCNGC 2 cut(s) 597, 600
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 2 cut(s) 597, 600
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 177
GluI GCNGC 2 cut(s) 597, 600
HaeIII GGCC 1 cut(s) 231
HhaI GCGC 1 cut(s) 178
Hin1II CATG 2 cut(s) 300, 596
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 3 cut(s) 4, 90, 105
HphI GGTGA 2 cut(s) 361, 500
Hpy166II GTNNAC 4 cut(s) 137, 406, 497, 543
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 2 cut(s) 142, 306
Hpy8I GTNNAC 4 cut(s) 137, 406, 497, 543
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 3 cut(s) 64, 289, 349
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 5 cut(s) 20, 328, 426, 479, 596
HpyF10VI GCNNNNNNNGC 1 cut(s) 378
HpySE526I ACGT 1 cut(s) 503
Hsp92II CATG 2 cut(s) 300, 596
HspAI GCGC 1 cut(s) 176
KpnI GGTACC 1 cut(s) 186
Kzo9I GATC 1 cut(s) 219
Lsp1109I GCAGC 2 cut(s) 586, 608
LweI GCATC 1 cut(s) 315
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 4 cut(s) 58, 223, 258, 349
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 2 cut(s) 394, 529
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 6 cut(s) 62, 214, 218, 242, 422, 564
MseI TTAA 2 cut(s) 318, 356
MspA1I CMGCKG 1 cut(s) 599
MspR9I CCNGG 2 cut(s) 102, 265
MvaI CCWGG 2 cut(s) 102, 265
MwoI GCNNNNNNNGC 1 cut(s) 378
NdeII GATC 1 cut(s) 219
NlaIII CATG 2 cut(s) 300, 596
NlaIV GGNNCC 3 cut(s) 36, 184, 364
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 2 cut(s) 58, 349
PasI CCCWGGG 1 cut(s) 264
PceI AGGCCT 1 cut(s) 231
PfeI GAWTC 2 cut(s) 4, 105
PkrI GCNGC 2 cut(s) 598, 601
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PshBI ATTAAT 1 cut(s) 356
Psp6I CCWGG 2 cut(s) 100, 263
PspGI CCWGG 2 cut(s) 100, 263
PspN4I GGNNCC 3 cut(s) 36, 184, 364
PspPI GGNCC 1 cut(s) 406
PvuII CAGCTG 1 cut(s) 599
RsaI GTAC 3 cut(s) 72, 184, 458
RsaNI GTAC 3 cut(s) 71, 183, 457
SaqAI TTAA 2 cut(s) 318, 356
SatI GCNGC 2 cut(s) 597, 600
Sau3AI GATC 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 406
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 2 cut(s) 102, 265
SduI GDGCHC 1 cut(s) 374
SetI ASST 3 cut(s) 103, 506, 601
SfaNI GCATC 1 cut(s) 315
SinI GGWCC 1 cut(s) 406
SpeI ACTAGT 1 cut(s) 148
Sse9I AATT 2 cut(s) 394, 529
SseBI AGGCCT 1 cut(s) 231
SsiI CCGC 2 cut(s) 114, 166
SspMI CTAG 1 cut(s) 149
StuI AGGCCT 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 100, 263
TaaI ACNGT 3 cut(s) 64, 289, 349
TaiI ACGT 1 cut(s) 506
TaqI TCGA 2 cut(s) 75, 210
TaqII GACCGA 1 cut(s) 423
TasI AATT 2 cut(s) 394, 529
TfiI GAWTC 2 cut(s) 4, 105
Tru1I TTAA 2 cut(s) 318, 356
Tru9I TTAA 2 cut(s) 318, 356
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 2 cut(s) 58, 349
TseI GCWGC 2 cut(s) 596, 599
Tsp45I GTSAC 2 cut(s) 58, 349
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 406
VspI ATTAAT 1 cut(s) 356
XapI RAATTY 1 cut(s) 529
XcmI CCANNNNNNNNNTGG 2 cut(s) 261, 448
XmiI GTMKAC 2 cut(s) 136, 542
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.