RLG00000015407

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018587
Physical Location & Seq
Reverse (-)
65652339 .. 65655823
3485 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015407

Sequence Viewer

Length: 885 bp
ATGCTGTTTCAAGATATTAACCCTGTCATTTGCTTTCAGATTGTAAAAGTTTCTCTGGATCTACTCAAACTGTTCCTGAGTTGGAAGAAAACAGGGAGGGGTGAGATATTTGGAAAGGGAGACAACAGATTTTGGAAGAGTACTTGGCCGCATTTTCACACCCTCAGTGATATTATTGGAGATTTGGGTAAGCCTTTCACCCTCGTTTTGGTCCTCCAAGCCGCGGCGACATCAGCTCGGAGCAGCTCAATATGTCAAGATCAGATCCCAGTCATGAACAAGCGAAAAAACTGTAGAGGACATTTCAGGATGAGCAAAGAGGGGGATTCGGGGACCGACCAAGATAGTCAGCTCCAAAAAGAAGAAATGAAAAAACGAATGGAGCATATAAAAAAACAAAAGGAAACATTTCGTCGGATGACTCATATACCTCTAATTCTTCGAACGAATGCGGGAATAGAAATTCCCACAGAGAATGAAGTGAAATCAGGACATAAGCGTCTTTCAGACTATTTGCAGTTGTATGGTTTGGCGGAGCGCATTGTCATGGGTGATGGCAACTGTCAGTATCGTGCCTTGTCAGATCAGATATATAGGACCGAAGACAATTATGATCATGTAAAAAAGAAAGTTATTGAACAGCTCAAGAAAATGCCACAGAACTACAGTGGGTTTATTCTTACTGATGAGTATCCTACTTTTGATGCTTATATAGAAAAAATAAGCAGTATTGGGGAATGGGGAGACAATTGCACATTGCAGGCGGCTGCTGATGCGTTTGGTGCTACGATATACGTATTCTCAATTGCTTACCCTGACGGCGTAATTGCTATTCCTCCCTCATCAAGGTCCACTAGAGGTATCAAAAAACCGACGATTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

295

Amino Acids

33.51

Weight (kDa)

9.12

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 184 - 272 8e-11 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018587)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0486081
rosa_laevigata RLG00000015407 RLG00000015416
rosa_multiflora Rmu_sc0002522.1_g000045
rosa_samantha Rh6AG017500 Rh6AG018300 Rh6AG018600 Rh6AG019200
rosa_wichuraiana Rw6G000100 Rw6G002130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 498
AccII CGCG 1 cut(s) 224
AciI CCGC 6 cut(s) 149, 222, 224, 452, 533, 764
AclWI GGATC 2 cut(s) 66, 259
AcoI YGGCCR 1 cut(s) 146
AcsI RAATTY 1 cut(s) 462
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 3 cut(s) 208, 223, 846
AgsI TTSAA 2 cut(s) 11, 638
AluBI AGCT 4 cut(s) 236, 246, 352, 643
AluI AGCT 4 cut(s) 236, 246, 352, 643
Alw26I GTCTC 2 cut(s) 114, 738
AlwI GGATC 2 cut(s) 66, 259
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 2 cut(s) 243, 767
ApoI RAATTY 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 408
AspLEI GCGC 1 cut(s) 540
AspS9I GGNCC 4 cut(s) 211, 333, 597, 849
AsuHPI GGTGA 3 cut(s) 113, 190, 563
AsuII TTCGAA 1 cut(s) 442
AvaII GGWCC 4 cut(s) 211, 333, 597, 849
BbsI GAAGAC 1 cut(s) 609
BbvI GCAGC 2 cut(s) 255, 754
BccI CCATC 1 cut(s) 548
BceAI ACGGC 1 cut(s) 835
BciVI GTATCC 1 cut(s) 702
BclI TGATCA 1 cut(s) 613
BcoDI GTCTC 2 cut(s) 114, 738
BfaI CTAG 1 cut(s) 855
BfmI CTRYAG 2 cut(s) 292, 664
BfuI GTATCC 1 cut(s) 702
BisI GCNGC 6 cut(s) 149, 222, 225, 244, 765, 768
BlsI GCNGC 6 cut(s) 150, 223, 226, 245, 766, 769
BmcAI AGTACT 1 cut(s) 142
Bme18I GGWCC 4 cut(s) 211, 333, 597, 849
BmgT120I GGNCC 4 cut(s) 211, 333, 597, 849
BmiI GGNNCC 1 cut(s) 334
BmrI ACTGGG 1 cut(s) 263
BmsI GCATC 2 cut(s) 694, 763
BmuI ACTGGG 1 cut(s) 263
BpiI GAAGAC 1 cut(s) 609
Bpu14I TTCGAA 1 cut(s) 442
BpuEI CTTGAG 1 cut(s) 629
BsaAI YACGTR 1 cut(s) 796
BsaBI GATNNNNATC 1 cut(s) 690
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 223, 846
Bse1I ACTGG 1 cut(s) 269
Bse3DI GCAATG 1 cut(s) 755
Bse8I GATNNNNATC 1 cut(s) 690
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 315, 423
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 3 cut(s) 208, 223, 846
BseMI GCAATG 1 cut(s) 755
BseMII CTCAG 2 cut(s) 68, 178
BseNI ACTGG 1 cut(s) 269
BseXI GCAGC 2 cut(s) 255, 754
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 1 cut(s) 148
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 3 cut(s) 208, 223, 846
BsmAI GTCTC 2 cut(s) 114, 738
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 454
BsnI GGCC 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 442
Bsp143I GATC 5 cut(s) 58, 259, 264, 583, 613
BspACI CCGC 6 cut(s) 149, 222, 224, 452, 533, 764
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 2 cut(s) 69, 177
BspFNI CGCG 1 cut(s) 224
BspHI TCATGA 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 334
BspPI GGATC 2 cut(s) 66, 259
BspT104I TTCGAA 1 cut(s) 442
BsrDI GCAATG 1 cut(s) 755
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 5 cut(s) 58, 259, 264, 583, 613
Bst4CI ACNGT 4 cut(s) 72, 293, 563, 668
Bst6I CTCTTC 1 cut(s) 131
BstBAI YACGTR 1 cut(s) 796
BstBI TTCGAA 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 762
BstDEI CTNAG 2 cut(s) 77, 164
BstDSI CCRYGG 1 cut(s) 222
BstENI CCTNNNNNAGG 1 cut(s) 844
BstF5I GGATG 2 cut(s) 315, 423
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 1 cut(s) 540
BstKTI GATC 5 cut(s) 61, 262, 267, 586, 616
BstMAI GTCTC 2 cut(s) 114, 738
BstMBI GATC 5 cut(s) 58, 259, 264, 583, 613
BstMWI GCNNNNNNNGC 3 cut(s) 233, 773, 782
BstSFI CTRYAG 2 cut(s) 292, 664
BstSNI TACGTA 1 cut(s) 796
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 2 cut(s) 255, 754
BstV2I GAAGAC 1 cut(s) 609
BstX2I RGATCY 2 cut(s) 58, 264
BstYI RGATCY 2 cut(s) 58, 264
BsuI GTATCC 1 cut(s) 702
BsuRI GGCC 1 cut(s) 148
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 2 cut(s) 315, 423
BtsIMutI CAGTG 2 cut(s) 172, 673
Cac8I GCNNGC 1 cut(s) 762
CciI TCATGA 1 cut(s) 273
CfoI GCGC 1 cut(s) 540
Cfr13I GGNCC 4 cut(s) 211, 333, 597, 849
Cfr42I CCGCGG 1 cut(s) 225
CseI GACGC 1 cut(s) 488
Csp6I GTAC 1 cut(s) 141
CviAII CATG 3 cut(s) 274, 547, 617
CviJI RGCY 8 cut(s) 148, 193, 221, 236, 246, 352, 643, 767
CviKI_1 RGCY 8 cut(s) 148, 193, 221, 236, 246, 352, 643, 767
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 2 cut(s) 77, 164
DpnI GATC 5 cut(s) 60, 261, 266, 585, 615
DpnII GATC 5 cut(s) 58, 259, 264, 583, 613
DrdI GACNNNNNNGTC 1 cut(s) 498
DseDI GACNNNNNNGTC 1 cut(s) 498
EaeI YGGCCR 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EciI GGCGGA 1 cut(s) 548
Eco105I TACGTA 1 cut(s) 796
Eco47I GGWCC 4 cut(s) 211, 333, 597, 849
EcoNI CCTNNNNNAGG 1 cut(s) 844
FaeI CATG 3 cut(s) 277, 550, 620
FaqI GGGAC 1 cut(s) 346
FatI CATG 3 cut(s) 273, 546, 616
FauI CCCGC 1 cut(s) 445
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 6 cut(s) 149, 222, 225, 244, 765, 768
FokI GGATG 2 cut(s) 322, 430
Fsp4HI GCNGC 6 cut(s) 149, 222, 225, 244, 765, 768
FspBI CTAG 1 cut(s) 855
GlaI GCGC 1 cut(s) 539
GluI GCNGC 6 cut(s) 149, 222, 225, 244, 765, 768
HaeIII GGCC 1 cut(s) 148
HgaI GACGC 1 cut(s) 488
HhaI GCGC 1 cut(s) 540
Hin1II CATG 3 cut(s) 277, 550, 620
Hin6I GCGC 1 cut(s) 538
HinP1I GCGC 1 cut(s) 538
HinfI GANTC 2 cut(s) 326, 421
HphI GGTGA 3 cut(s) 113, 190, 563
Hpy166II GTNNAC 1 cut(s) 852
Hpy188I TCNGA 7 cut(s) 39, 240, 264, 417, 508, 583, 588
Hpy188III TCNNGA 8 cut(s) 11, 56, 76, 257, 274, 307, 489, 646
Hpy8I GTNNAC 1 cut(s) 852
Hpy99I CGWCG 2 cut(s) 417, 877
HpyCH4III ACNGT 4 cut(s) 72, 293, 563, 668
HpyCH4IV ACGT 1 cut(s) 795
HpyCH4V TGCA 3 cut(s) 517, 753, 760
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 773, 782
HpyF3I CTNAG 2 cut(s) 77, 164
HpySE526I ACGT 1 cut(s) 795
Hsp92II CATG 3 cut(s) 277, 550, 620
HspAI GCGC 1 cut(s) 538
Ksp22I TGATCA 1 cut(s) 613
KspI CCGCGG 1 cut(s) 225
Kzo9I GATC 5 cut(s) 58, 259, 264, 583, 613
LmnI GCTCC 4 cut(s) 240, 357, 382, 535
LpnPI CCDG 9 cut(s) 36, 41, 78, 89, 282, 292, 474, 746, 828
Lsp1109I GCAGC 2 cut(s) 255, 754
LweI GCATC 2 cut(s) 694, 763
MaeI CTAG 1 cut(s) 855
MaeII ACGT 1 cut(s) 795
MalI GATC 5 cut(s) 60, 261, 266, 585, 615
MboI GATC 5 cut(s) 58, 259, 264, 583, 613
MboII GAAGA 5 cut(s) 97, 148, 374, 431, 614
MfeI CAATTG 2 cut(s) 748, 804
MflI RGATCY 2 cut(s) 58, 264
MluCI AATT 6 cut(s) 435, 462, 607, 748, 804, 825
MlyI GAGTC 1 cut(s) 415
MmeI TCCRAC 2 cut(s) 62, 395
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 224
MunI CAATTG 2 cut(s) 748, 804
Mva1269I GAATGC 1 cut(s) 454
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 3 cut(s) 233, 773, 782
NdeII GATC 5 cut(s) 58, 259, 264, 583, 613
NlaIII CATG 3 cut(s) 277, 550, 620
NlaIV GGNNCC 1 cut(s) 334
NspV TTCGAA 1 cut(s) 442
PagI TCATGA 1 cut(s) 273
PctI GAATGC 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 1 cut(s) 326
PkrI GCNGC 6 cut(s) 150, 223, 226, 245, 766, 769
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
Ppu21I YACGTR 1 cut(s) 796
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 4 cut(s) 211, 333, 597, 849
PsuI RGATCY 2 cut(s) 58, 264
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 545
SacII CCGCGG 1 cut(s) 225
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 6 cut(s) 149, 222, 225, 244, 765, 768
Sau3AI GATC 5 cut(s) 58, 259, 264, 583, 613
Sau96I GGNCC 4 cut(s) 211, 333, 597, 849
ScaI AGTACT 1 cut(s) 142
SchI GAGTC 1 cut(s) 415
SetI ASST 8 cut(s) 238, 248, 354, 433, 645, 798, 851, 862
SfaNI GCATC 2 cut(s) 694, 763
SfcI CTRYAG 2 cut(s) 292, 664
Sfr303I CCGCGG 1 cut(s) 225
SfuI TTCGAA 1 cut(s) 442
SgrBI CCGCGG 1 cut(s) 225
SinI GGWCC 4 cut(s) 211, 333, 597, 849
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
SnaBI TACGTA 1 cut(s) 796
Sse9I AATT 6 cut(s) 435, 462, 607, 748, 804, 825
SsiI CCGC 6 cut(s) 149, 222, 224, 452, 533, 764
SspMI CTAG 1 cut(s) 855
TaaI ACNGT 4 cut(s) 72, 293, 563, 668
TaiI ACGT 1 cut(s) 798
TaqI TCGA 1 cut(s) 442
TaqII GACCGA 2 cut(s) 350, 614
TasI AATT 6 cut(s) 435, 462, 607, 748, 804, 825
TatI WGTACW 1 cut(s) 140
TauI GCSGC 4 cut(s) 151, 224, 227, 767
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 2 cut(s) 172, 673
TseI GCWGC 2 cut(s) 243, 767
TspDTI ATGAA 3 cut(s) 290, 383, 492
TspRI CASTG 2 cut(s) 172, 673
VpaK11BI GGWCC 4 cut(s) 211, 333, 597, 849
XagI CCTNNNNNAGG 1 cut(s) 844
XapI RAATTY 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 1 cut(s) 855
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.