Rh6AG018600

OTU-like cysteine protease family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018587
Physical Location & Seq
Forward (+)
1954513 .. 1958060
3548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG018600.1

Sequence Viewer

Length: 438 bp
ATGGCTCTCTGTTCGATTGCTCATCTATTTTTGTTGTATGGTTTGGGGAAGCGCATTGTCATGGGAGATGGCAACTGTCAGATTTATCGTGCCTTGTCAGATCAGATATGTAGGACTGAAGACAATTATGATCATGTAAAAAAGAAAGTTATTGAACAGCTCAAGAAAATGCCACAGAACTACAGTGGGTTTATTCTTACTGATGAGTATCCTACTTTTGATGCTTATATAGAAAAAATAAGCAGTATTGGGGAATGGGGAGACAATTGCACATTGCAGGCGGCTGCTGATGCGTTTGGTGCTACGATATACGTATTCTCAGTTGCTTACCCTGATGGTGTAATTGCTATTCCTCCCTCATCAAGGTCCACTAGAGAGTGTTACATAAGCCATTGGGCTGAGGTACATTACAATTCAGTATATCACAAGGTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

145

Amino Acids

16.39

Weight (kDa)

5.67

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 22 - 112 2e-10 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018587)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0486081
rosa_laevigata RLG00000015407 RLG00000015416
rosa_multiflora Rmu_sc0002522.1_g000045
rosa_samantha Rh6AG017500 Rh6AG018300 Rh6AG018600 Rh6AG019200
rosa_wichuraiana Rw6G000100 Rw6G002130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 1 cut(s) 363
AgsI TTSAA 1 cut(s) 155
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 366
AvaII GGWCC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 126
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 271
BccI CCATC 2 cut(s) 62, 329
BciVI GTATCC 1 cut(s) 219
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 372
BfmI CTRYAG 1 cut(s) 181
BfuI GTATCC 1 cut(s) 219
BisI GCNGC 2 cut(s) 282, 285
BlsI GCNGC 2 cut(s) 283, 286
Bme18I GGWCC 1 cut(s) 366
BmgT120I GGNCC 1 cut(s) 366
BmsI GCATC 2 cut(s) 211, 280
BpiI GAAGAC 1 cut(s) 126
Bpu10I CCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 313
BsaBI GATNNNNATC 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 363
Bse3DI GCAATG 1 cut(s) 272
Bse8I GATNNNNATC 1 cut(s) 207
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 363
BseMI GCAATG 1 cut(s) 272
BseMII CTCAG 2 cut(s) 333, 390
BseXI GCAGC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 363
BsmAI GTCTC 1 cut(s) 255
Bsp143I GATC 2 cut(s) 100, 130
BspACI CCGC 1 cut(s) 281
BspCNI CTCAG 2 cut(s) 332, 391
BsrDI GCAATG 1 cut(s) 272
BssMI GATC 2 cut(s) 100, 130
Bst4CI ACNGT 2 cut(s) 77, 185
BstBAI YACGTR 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 2 cut(s) 319, 399
BstENI CCTNNNNNAGG 1 cut(s) 361
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 2 cut(s) 103, 133
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 2 cut(s) 100, 130
BstMWI GCNNNNNNNGC 2 cut(s) 290, 299
BstSFI CTRYAG 1 cut(s) 181
BstSNI TACGTA 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 271
BstV2I GAAGAC 1 cut(s) 126
BsuI GTATCC 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 279
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 366
Csp6I GTAC 1 cut(s) 404
CviAII CATG 2 cut(s) 61, 134
CviJI RGCY 5 cut(s) 5, 160, 284, 390, 398
CviKI_1 RGCY 5 cut(s) 5, 160, 284, 390, 398
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 2 cut(s) 319, 399
DpnI GATC 2 cut(s) 102, 132
DpnII GATC 2 cut(s) 100, 130
Eco105I TACGTA 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 366
Eco57I CTGAAG 1 cut(s) 138
EcoNI CCTNNNNNAGG 1 cut(s) 361
FaeI CATG 2 cut(s) 64, 137
FatI CATG 2 cut(s) 60, 133
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 282, 285
Fsp4HI GCNGC 2 cut(s) 282, 285
FspBI CTAG 1 cut(s) 372
GlaI GCGC 1 cut(s) 53
GluI GCNGC 2 cut(s) 282, 285
HhaI GCGC 1 cut(s) 54
Hin1II CATG 2 cut(s) 64, 137
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 3 cut(s) 81, 100, 105
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 369
HpyCH4III ACNGT 2 cut(s) 77, 185
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 2 cut(s) 270, 277
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 299
HpyF3I CTNAG 2 cut(s) 319, 399
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 2 cut(s) 64, 137
HspAI GCGC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 2 cut(s) 100, 130
LpnPI CCDG 2 cut(s) 263, 345
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 2 cut(s) 211, 280
MaeI CTAG 1 cut(s) 372
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 380
MalI GATC 2 cut(s) 102, 132
MboI GATC 2 cut(s) 100, 130
MboII GAAGA 1 cut(s) 131
MfeI CAATTG 1 cut(s) 265
MluCI AATT 4 cut(s) 124, 265, 342, 412
MnlI CCTC 3 cut(s) 363, 367, 394
MslI CAYNNNNRTG 1 cut(s) 59
MunI CAATTG 1 cut(s) 265
MwoI GCNNNNNNNGC 2 cut(s) 290, 299
NdeII GATC 2 cut(s) 100, 130
NlaIII CATG 2 cut(s) 64, 137
PkrI GCNGC 2 cut(s) 283, 286
Ppu21I YACGTR 1 cut(s) 313
PspPI GGNCC 1 cut(s) 366
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 59
SatI GCNGC 2 cut(s) 282, 285
Sau3AI GATC 2 cut(s) 100, 130
Sau96I GGNCC 1 cut(s) 366
SetI ASST 5 cut(s) 162, 315, 368, 405, 432
SfaNI GCATC 2 cut(s) 211, 280
SfcI CTRYAG 1 cut(s) 181
SgeI CNNG 9 cut(s) 73, 101, 106, 146, 175, 290, 344, 375, 384
SinI GGWCC 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
SnaBI TACGTA 1 cut(s) 313
Sse9I AATT 4 cut(s) 124, 265, 342, 412
SsiI CCGC 1 cut(s) 281
SspMI CTAG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 77, 185
TaiI ACGT 1 cut(s) 315
TaqI TCGA 1 cut(s) 14
TasI AATT 4 cut(s) 124, 265, 342, 412
TauI GCSGC 1 cut(s) 284
TscAI CASTG 1 cut(s) 190
TseI GCWGC 1 cut(s) 284
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 1 cut(s) 366
XagI CCTNNNNNAGG 1 cut(s) 361
XspI CTAG 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.