Rw6G000100

OTU-like cysteine protease family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0018587
Physical Location & Seq
Reverse (-)
164505 .. 170070
5566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G000100.1

Sequence Viewer

Length: 1095 bp
ATGCTGTTTCAAGATATTAACCCTGTCATTTGCTTTCAGATTGTAAAAGTTTCTCTGGATCTACTCAAACTGTTCCTGAGTTGGAAGAAAACAGGGAGGGGTGAGATATTTGGAAAGGGAGACAACAGATTTTGGAAGAGTACTTGGCCGCATTTTCAGACCCTCAGTGATATTATTGGAGATTTGGGTAAGCCTTTCACCCTCGTTTTGGTCCTCCAAGCCGCGGCGACATCAGCTCGTGTAGCATTAGTCATTCATGAAATTACGTTAGCCTTGGAAATCTATTGCTTCAGGAGAGAGCAGCTCAATATGTCAAGATCAGATCCCAGTCATGAGTATGCCCCCTTGGGTCTTCATCATCAATTGAATTTGTGCACTCTCACGTCCCATTGTCCTGATCGTCGCCCCAACCATTCAGACAAGCGAAAAAACTGTAGAGGACATTTCTGGATGAGCAAAGAGGGGGATTCGGGGACCGACCAAGATAGTCAGCTCCAAAAAGAAGAAACGAAAAAACAAATGGAGCATATAAAAAAACAAAAGGAAACATTTCGTCGGATGACTCATATACCTCTAATTCTTCGAACGAATGCGGGAATAGAAATTCCCACAGAGAATGAAGTGAAATCAGGACATAAGCGTCTTTCAGACTATTTGCAGTTGTATGGTTTGGCGGAGCGCATTGTCATGGGAGATGGCAACTGTCAGTATCGTGCCTTGTCAGATCAGATATATAGGACCGAAGACAATTATGATCATGTAAAAAAGAAAGTTATTGAACAGCTCAAGAAAATGCCTCAGAACTACAGTGGGTTTATTCTTACTGATGAGTATCCTACTTTTGATGCTTATATAGAAAAAATAAGCAGTATTGGGGAATGGGGAGACAATTGTACATTGCAGGCGGCTGCTGATGCGTTTGGTGCTACGATATACGTATTCTCAATTGCTTACCCTGATGGTGTAATTGCTATTCCTCCCTCATCAAGGTCCACTAGAGTGTGTTACATAAGCCATTGGGCTGAGGTACATTACAATTCAGTATATCACAAGAAAAAAAAAACAAAAGAAGAAAAAAGAAAACATTTGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

364

Amino Acids

41.95

Weight (kDa)

8.91

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OTU PF02338 231 - 320 8e-11 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018587)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0486081
rosa_laevigata RLG00000015407 RLG00000015416
rosa_multiflora Rmu_sc0002522.1_g000045
rosa_samantha Rh6AG017500 Rh6AG018300 Rh6AG018600 Rh6AG019200
rosa_wichuraiana Rw6G000100 Rw6G002130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 639
AccII CGCG 1 cut(s) 224
AciI CCGC 6 cut(s) 149, 222, 224, 593, 674, 905
AclWI GGATC 2 cut(s) 66, 317
AcoI YGGCCR 1 cut(s) 146
AcsI RAATTY 2 cut(s) 367, 603
AcuI CTGAAG 1 cut(s) 274
AfaI GTAC 3 cut(s) 142, 895, 1029
AfiI CCNNNNNNNGG 3 cut(s) 208, 223, 987
AgsI TTSAA 3 cut(s) 11, 367, 779
AjiI CACGTC 1 cut(s) 384
AleI CACNNNNGTG 1 cut(s) 998
AluBI AGCT 4 cut(s) 236, 304, 493, 784
AluI AGCT 4 cut(s) 236, 304, 493, 784
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 2 cut(s) 114, 879
Alw44I GTGCAC 1 cut(s) 373
AlwI GGATC 2 cut(s) 66, 317
AoxI GGCC 1 cut(s) 146
ApaLI GTGCAC 1 cut(s) 373
ApeKI GCWGC 2 cut(s) 301, 908
ApoI RAATTY 2 cut(s) 367, 603
Asp700I GAANNNNTTC 1 cut(s) 549
AspLEI GCGC 1 cut(s) 681
AspS9I GGNCC 4 cut(s) 211, 474, 738, 990
AsuHPI GGTGA 2 cut(s) 113, 190
AsuII TTCGAA 1 cut(s) 583
AvaII GGWCC 4 cut(s) 211, 474, 738, 990
BaeGI GKGCMC 1 cut(s) 377
BauI CACGAG 1 cut(s) 237
BbsI GAAGAC 2 cut(s) 344, 750
Bbv12I GWGCWC 1 cut(s) 377
BbvCI CCTCAGC 1 cut(s) 1023
BbvI GCAGC 2 cut(s) 313, 895
BccI CCATC 2 cut(s) 689, 953
BciVI GTATCC 1 cut(s) 843
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 2 cut(s) 114, 879
BfaI CTAG 1 cut(s) 996
BfmI CTRYAG 2 cut(s) 433, 805
BfuI GTATCC 1 cut(s) 843
BisI GCNGC 6 cut(s) 149, 222, 225, 302, 906, 909
BlsI GCNGC 6 cut(s) 150, 223, 226, 303, 907, 910
BmcAI AGTACT 1 cut(s) 142
Bme18I GGWCC 4 cut(s) 211, 474, 738, 990
BmgBI CACGTC 1 cut(s) 384
BmgT120I GGNCC 4 cut(s) 211, 474, 738, 990
BmiI GGNNCC 1 cut(s) 475
BmrI ACTGGG 1 cut(s) 321
BmsI GCATC 2 cut(s) 835, 904
BmuI ACTGGG 1 cut(s) 321
BpiI GAAGAC 2 cut(s) 344, 750
BplI GAGNNNNNCTC 2 cut(s) 288, 320
Bpu10I CCTNAGC 1 cut(s) 1023
Bpu14I TTCGAA 1 cut(s) 583
BpuEI CTTGAG 1 cut(s) 770
BsaAI YACGTR 1 cut(s) 937
BsaBI GATNNNNATC 1 cut(s) 831
BsaJI CCNNGG 3 cut(s) 222, 273, 345
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 223, 987
Bse1I ACTGG 1 cut(s) 327
Bse3DI GCAATG 1 cut(s) 896
Bse8I GATNNNNATC 1 cut(s) 831
BseDI CCNNGG 3 cut(s) 222, 273, 345
BseGI GGATG 2 cut(s) 456, 564
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 3 cut(s) 208, 223, 987
BseMI GCAATG 1 cut(s) 896
BseMII CTCAG 4 cut(s) 68, 178, 812, 1014
BseNI ACTGG 1 cut(s) 327
BseSI GKGCMC 1 cut(s) 377
BseXI GCAGC 2 cut(s) 313, 895
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 377
BslFI GGGAC 2 cut(s) 370, 487
BslI CCNNNNNNNGG 3 cut(s) 208, 223, 987
BsmAI GTCTC 2 cut(s) 114, 879
BsmFI GGGAC 2 cut(s) 370, 487
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 583
Bsp1286I GDGCHC 1 cut(s) 377
Bsp1407I TGTACA 1 cut(s) 893
Bsp143I GATC 6 cut(s) 58, 317, 322, 397, 724, 754
BspACI CCGC 6 cut(s) 149, 222, 224, 593, 674, 905
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 4 cut(s) 69, 177, 811, 1015
BspFNI CGCG 1 cut(s) 224
BspHI TCATGA 2 cut(s) 256, 331
BspLI GGNNCC 1 cut(s) 475
BspPI GGATC 2 cut(s) 66, 317
BspT104I TTCGAA 1 cut(s) 583
BsrDI GCAATG 1 cut(s) 896
BsrGI TGTACA 1 cut(s) 893
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 3 cut(s) 222, 273, 345
BssMI GATC 6 cut(s) 58, 317, 322, 397, 724, 754
BssSI CACGAG 1 cut(s) 237
BssT1I CCWWGG 2 cut(s) 273, 345
Bst2BI CACGAG 1 cut(s) 237
Bst4CI ACNGT 4 cut(s) 72, 434, 704, 809
Bst6I CTCTTC 1 cut(s) 131
BstAUI TGTACA 1 cut(s) 893
BstBAI YACGTR 1 cut(s) 937
BstBI TTCGAA 1 cut(s) 583
BstC8I GCNNGC 1 cut(s) 903
BstDEI CTNAG 4 cut(s) 77, 164, 798, 1023
BstDSI CCRYGG 1 cut(s) 222
BstENI CCTNNNNNAGG 1 cut(s) 985
BstF5I GGATG 2 cut(s) 456, 564
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 1 cut(s) 681
BstKTI GATC 6 cut(s) 61, 320, 325, 400, 727, 757
BstMAI GTCTC 2 cut(s) 114, 879
BstMBI GATC 6 cut(s) 58, 317, 322, 397, 724, 754
BstMWI GCNNNNNNNGC 4 cut(s) 233, 242, 914, 923
BstSFI CTRYAG 2 cut(s) 433, 805
BstSLI GKGCMC 1 cut(s) 377
BstSNI TACGTA 1 cut(s) 937
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 2 cut(s) 313, 895
BstV2I GAAGAC 2 cut(s) 344, 750
BstX2I RGATCY 2 cut(s) 58, 322
BstYI RGATCY 2 cut(s) 58, 322
BsuI GTATCC 1 cut(s) 843
BsuRI GGCC 1 cut(s) 148
BtgI CCRYGG 1 cut(s) 222
BtrI CACGTC 1 cut(s) 384
BtsCI GGATG 2 cut(s) 456, 564
BtsIMutI CAGTG 2 cut(s) 172, 814
Cac8I GCNNGC 1 cut(s) 903
CciI TCATGA 2 cut(s) 256, 331
CfoI GCGC 1 cut(s) 681
Cfr13I GGNCC 4 cut(s) 211, 474, 738, 990
Cfr42I CCGCGG 1 cut(s) 225
CseI GACGC 1 cut(s) 629
Csp6I GTAC 3 cut(s) 141, 894, 1028
CviAII CATG 4 cut(s) 257, 332, 688, 758
CviQI GTAC 3 cut(s) 141, 894, 1028
DdeI CTNAG 4 cut(s) 77, 164, 798, 1023
DpnI GATC 6 cut(s) 60, 319, 324, 399, 726, 756
DpnII GATC 6 cut(s) 58, 317, 322, 397, 724, 754
DrdI GACNNNNNNGTC 1 cut(s) 639
DseDI GACNNNNNNGTC 1 cut(s) 639
EaeI YGGCCR 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EciI GGCGGA 1 cut(s) 689
Eco105I TACGTA 1 cut(s) 937
Eco130I CCWWGG 2 cut(s) 273, 345
Eco47I GGWCC 4 cut(s) 211, 474, 738, 990
Eco57I CTGAAG 1 cut(s) 274
EcoNI CCTNNNNNAGG 1 cut(s) 985
EcoT14I CCWWGG 2 cut(s) 273, 345
ErhI CCWWGG 2 cut(s) 273, 345
FaeI CATG 4 cut(s) 260, 335, 691, 761
FaqI GGGAC 2 cut(s) 370, 487
FatI CATG 4 cut(s) 256, 331, 687, 757
FauI CCCGC 1 cut(s) 586
FbaI TGATCA 1 cut(s) 754
Fnu4HI GCNGC 6 cut(s) 149, 222, 225, 302, 906, 909
FokI GGATG 2 cut(s) 463, 571
Fsp4HI GCNGC 6 cut(s) 149, 222, 225, 302, 906, 909
FspBI CTAG 1 cut(s) 996
GlaI GCGC 1 cut(s) 680
GluI GCNGC 6 cut(s) 149, 222, 225, 302, 906, 909
HaeIII GGCC 1 cut(s) 148
HgaI GACGC 1 cut(s) 629
HhaI GCGC 1 cut(s) 681
Hin1II CATG 4 cut(s) 260, 335, 691, 761
Hin6I GCGC 1 cut(s) 679
HinP1I GCGC 1 cut(s) 679
HinfI GANTC 2 cut(s) 467, 562
HphI GGTGA 2 cut(s) 113, 190
Hpy166II GTNNAC 2 cut(s) 375, 993
Hpy188I TCNGA 9 cut(s) 39, 159, 322, 418, 558, 649, 724, 729, 801
Hpy8I GTNNAC 2 cut(s) 375, 993
Hpy99I CGWCG 2 cut(s) 405, 558
HpyCH4III ACNGT 4 cut(s) 72, 434, 704, 809
HpyCH4IV ACGT 3 cut(s) 266, 383, 936
HpyCH4V TGCA 3 cut(s) 375, 658, 901
HpyF10VI GCNNNNNNNGC 4 cut(s) 233, 242, 914, 923
HpyF3I CTNAG 4 cut(s) 77, 164, 798, 1023
HpySE526I ACGT 3 cut(s) 266, 383, 936
Hsp92II CATG 4 cut(s) 260, 335, 691, 761
HspAI GCGC 1 cut(s) 679
Ksp22I TGATCA 1 cut(s) 754
KspI CCGCGG 1 cut(s) 225
Kzo9I GATC 6 cut(s) 58, 317, 322, 397, 724, 754
LmnI GCTCC 3 cut(s) 498, 523, 676
Lsp1109I GCAGC 2 cut(s) 313, 895
LweI GCATC 2 cut(s) 835, 904
MaeI CTAG 1 cut(s) 996
MaeII ACGT 3 cut(s) 266, 383, 936
MaeIII GTNAC 1 cut(s) 1004
MalI GATC 6 cut(s) 60, 319, 324, 399, 726, 756
MboI GATC 6 cut(s) 58, 317, 322, 397, 724, 754
MboII GAAGA 7 cut(s) 97, 148, 344, 515, 572, 755, 1082
MfeI CAATTG 3 cut(s) 362, 889, 945
MflI RGATCY 2 cut(s) 58, 322
MhlI GDGCHC 1 cut(s) 377
MlyI GAGTC 1 cut(s) 556
MmeI TCCRAC 2 cut(s) 62, 536
MroXI GAANNNNTTC 1 cut(s) 549
MseI TTAA 2 cut(s) 18, 1093
MslI CAYNNNNRTG 3 cut(s) 336, 686, 998
MspA1I CMGCKG 1 cut(s) 224
MunI CAATTG 3 cut(s) 362, 889, 945
Mva1269I GAATGC 1 cut(s) 595
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 4 cut(s) 233, 242, 914, 923
NdeII GATC 6 cut(s) 58, 317, 322, 397, 724, 754
NlaIII CATG 4 cut(s) 260, 335, 691, 761
NlaIV GGNNCC 1 cut(s) 475
NspV TTCGAA 1 cut(s) 583
OliI CACNNNNGTG 1 cut(s) 998
PagI TCATGA 2 cut(s) 256, 331
PctI GAATGC 1 cut(s) 595
PdmI GAANNNNTTC 1 cut(s) 549
PfeI GAWTC 1 cut(s) 467
PkrI GCNGC 6 cut(s) 150, 223, 226, 303, 907, 910
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
Ppu21I YACGTR 1 cut(s) 937
PspN4I GGNNCC 1 cut(s) 475
PspPI GGNCC 4 cut(s) 211, 474, 738, 990
PsuI RGATCY 2 cut(s) 58, 322
RsaI GTAC 3 cut(s) 142, 895, 1029
RsaNI GTAC 3 cut(s) 141, 894, 1028
RseI CAYNNNNRTG 3 cut(s) 336, 686, 998
SacII CCGCGG 1 cut(s) 225
SaqAI TTAA 2 cut(s) 18, 1093
SatI GCNGC 6 cut(s) 149, 222, 225, 302, 906, 909
Sau3AI GATC 6 cut(s) 58, 317, 322, 397, 724, 754
Sau96I GGNCC 4 cut(s) 211, 474, 738, 990
ScaI AGTACT 1 cut(s) 142
SchI GAGTC 1 cut(s) 556
SduI GDGCHC 1 cut(s) 377
SfaNI GCATC 2 cut(s) 835, 904
SfcI CTRYAG 2 cut(s) 433, 805
Sfr303I CCGCGG 1 cut(s) 225
SfuI TTCGAA 1 cut(s) 583
SgrBI CCGCGG 1 cut(s) 225
SinI GGWCC 4 cut(s) 211, 474, 738, 990
SmiMI CAYNNNNRTG 3 cut(s) 336, 686, 998
SmlI CTYRAG 1 cut(s) 785
SmoI CTYRAG 1 cut(s) 785
SnaBI TACGTA 1 cut(s) 937
SsiI CCGC 6 cut(s) 149, 222, 224, 593, 674, 905
SspMI CTAG 1 cut(s) 996
StyI CCWWGG 2 cut(s) 273, 345
TaaI ACNGT 4 cut(s) 72, 434, 704, 809
TaiI ACGT 3 cut(s) 269, 386, 939
TaqI TCGA 1 cut(s) 583
TaqII GACCGA 2 cut(s) 491, 755
TatI WGTACW 2 cut(s) 140, 893
TauI GCSGC 4 cut(s) 151, 224, 227, 908
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 2 cut(s) 18, 1093
Tru9I TTAA 2 cut(s) 18, 1093
TscAI CASTG 2 cut(s) 172, 814
TseI GCWGC 2 cut(s) 301, 908
TspDTI ATGAA 4 cut(s) 245, 273, 344, 633
TspRI CASTG 2 cut(s) 172, 814
VneI GTGCAC 1 cut(s) 373
VpaK11BI GGWCC 4 cut(s) 211, 474, 738, 990
XagI CCTNNNNNAGG 1 cut(s) 985
XapI RAATTY 2 cut(s) 367, 603
XmnI GAANNNNTTC 1 cut(s) 549
XspI CTAG 1 cut(s) 996
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.