RLG00000015938

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0019073
Physical Location & Seq
Reverse (-)
2636997 .. 2637461
465 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015938

Sequence Viewer

Length: 384 bp
ATGGACGAGATGAAGACCCTGGAGTCTCACGATCAGCTGTCTCGGTTCTTGAGCTCCGGCCACTCCGACGAGAAATTCATCACTAACATCGTCATCAGCTTCACCCTCGCCAGAAGGGACATGACCTCGGCCACTTTGACCTGCGAAGGACATGAGGCTGTACCCGCCTGTTCCGACGGACAGCAAAGAGGCGATAGATGGAGCATATCTGGGGCAAGGACTGGCCGAGTTCCTACCCGAGAGGTGGTTGGAGTGTGGCGTGGAGACGTAGACGTGGTGGTTTGTGGCGAAAGACTCGTTTATCTACCCGGTGTTTCAGGTGGGGCCGAGGATCTGTTTGGGGAAGGAGATGTCATTTTTGCAGATGAAAAGGGTGTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

128

Amino Acids

13.73

Weight (kDa)

4.76

Isoelectric Point (pI)

28.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019073)

Species Orthologous Gene IDs
rosa_laevigata RLG00000015938 RLG00000022485 RLG00000033286
rosa_multiflora Rmu_sc0004239.1_g000014
rosa_roxburghii Rroxscaffold_1G00024000
rosa_rugosa Rorug02G0287100
rosa_samantha Rh2BG292900 Rh2DG287800 Rh5DG009600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
Acc36I ACCTGC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 270
AciI CCGC 1 cut(s) 165
AclWI GGATC 1 cut(s) 339
AcoI YGGCCR 3 cut(s) 58, 129, 223
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 244
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 1 cut(s) 18
AjuI GAANNNNNNNTTGG 1 cut(s) 360
AluBI AGCT 3 cut(s) 37, 54, 99
AluI AGCT 3 cut(s) 37, 54, 99
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 3 cut(s) 30, 45, 258
AlwI GGATC 1 cut(s) 339
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 4 cut(s) 58, 129, 223, 324
ApoI RAATTY 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 324
AsuC2I CCSGG 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 237
BanII GRGCYC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 56
BccI CCATC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 20
BcnI CCSGG 1 cut(s) 309
BcoDI GTCTC 3 cut(s) 30, 45, 258
BfuAI ACCTGC 1 cut(s) 149
Bme1390I CCNGG 2 cut(s) 20, 309
BmeT110I CYCGRG 1 cut(s) 237
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 324
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 2 cut(s) 20, 309
BpiI GAAGAC 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 70
BpuMI CCSGG 1 cut(s) 309
BsaJI CCNNGG 3 cut(s) 18, 126, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 226
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 3 cut(s) 18, 126, 327
BseLI CCNNNNNNNGG 1 cut(s) 244
BseNI ACTGG 1 cut(s) 226
BshFI GGCC 4 cut(s) 60, 131, 225, 326
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 2 cut(s) 57, 309
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 3 cut(s) 30, 45, 258
BsmBI CGTCTC 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 4 cut(s) 60, 131, 225, 326
BsoBI CYCGRG 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 31, 331
BspACI CCGC 1 cut(s) 165
BspANI GGCC 4 cut(s) 60, 131, 225, 326
BspLI GGNNCC 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 149
BspPI GGATC 1 cut(s) 339
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 3 cut(s) 18, 126, 327
BssMI GATC 2 cut(s) 31, 331
Bst2UI CCWGG 1 cut(s) 20
BstKTI GATC 2 cut(s) 34, 334
BstMAI GTCTC 3 cut(s) 30, 45, 258
BstMBI GATC 2 cut(s) 31, 331
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 2 cut(s) 18, 307
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 4 cut(s) 60, 131, 225, 326
BtrI CACGTC 1 cut(s) 274
BveI ACCTGC 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 324
Csp6I GTAC 1 cut(s) 161
CviAII CATG 2 cut(s) 121, 152
CviJI RGCY 8 cut(s) 37, 54, 60, 99, 131, 158, 225, 326
CviKI_1 RGCY 8 cut(s) 37, 54, 60, 99, 131, 158, 225, 326
CviQI GTAC 1 cut(s) 161
DpnI GATC 2 cut(s) 33, 333
DpnII GATC 2 cut(s) 31, 331
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 3 cut(s) 58, 129, 223
Ecl136II GAGCTC 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 56
Eco53kI GAGCTC 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 258
FaeI CATG 2 cut(s) 124, 155
FaiI YATR 3 cut(s) 122, 153, 206
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 120, 151
FauI CCCGC 1 cut(s) 172
FblI GTMKAC 1 cut(s) 270
FriOI GRGCYC 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 4 cut(s) 60, 131, 225, 326
HapII CCGG 2 cut(s) 57, 309
Hin1II CATG 2 cut(s) 124, 155
HinfI GANTC 2 cut(s) 23, 294
HpaII CCGG 2 cut(s) 57, 309
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 2 cut(s) 67, 175
Hpy188III TCNNGA 2 cut(s) 29, 49
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 2 cut(s) 71, 179
HpyAV CCTTC 3 cut(s) 108, 140, 338
HpyCH4IV ACGT 2 cut(s) 267, 273
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpySE526I ACGT 2 cut(s) 267, 273
Hsp92II CATG 2 cut(s) 124, 155
Kzo9I GATC 2 cut(s) 31, 331
LmnI GCTCC 2 cut(s) 59, 201
MaeII ACGT 2 cut(s) 267, 273
MalI GATC 2 cut(s) 33, 333
MboI GATC 2 cut(s) 31, 331
MboII GAAGA 1 cut(s) 25
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 1 cut(s) 74
MlyI GAGTC 2 cut(s) 32, 288
MmeI TCCRAC 3 cut(s) 90, 198, 229
MnlI CCTC 6 cut(s) 116, 136, 148, 182, 235, 322
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 2 cut(s) 57, 309
MspR9I CCNGG 2 cut(s) 20, 309
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 164
NciI CCSGG 1 cut(s) 309
NdeII GATC 2 cut(s) 31, 331
NlaIII CATG 2 cut(s) 124, 155
NlaIV GGNNCC 1 cut(s) 325
NmeAIII GCCGAG 3 cut(s) 107, 251, 352
PleI GAGTC 2 cut(s) 31, 288
PpsI GAGTC 2 cut(s) 31, 288
Psp124BI GAGCTC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 1 cut(s) 324
PsuI RGATCY 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SacI GAGCTC 1 cut(s) 56
Sau3AI GATC 2 cut(s) 31, 331
Sau96I GGNCC 1 cut(s) 324
SchI GAGTC 2 cut(s) 32, 288
ScrFI CCNGG 2 cut(s) 20, 309
SduI GDGCHC 1 cut(s) 56
SetI ASST 9 cut(s) 39, 56, 101, 128, 143, 246, 270, 276, 322
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 1 cut(s) 74
SsiI CCGC 1 cut(s) 165
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 2 cut(s) 18, 307
TaiI ACGT 2 cut(s) 270, 276
TasI AATT 1 cut(s) 74
TspDTI ATGAA 3 cut(s) 26, 67, 381
TspGWI ACGGA 1 cut(s) 192
XapI RAATTY 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.