Rmu_sc0004239.1_g000014

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004239.1
OG0019073
Physical Location & Seq
Forward (+)
40732 .. 41061
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004239.1_g000014.1.cds

Sequence Viewer

Length: 330 bp
atggacgagatgaagaccatggagtctcacgatcagctgtctcggttcttgagctctggccactccgatgagaaatttgtcacttacatcgtcatcagcttcaccctcgccggaagggacacaacctcggctgctttaacctggttcttctggctaatgtcaaaccatccaaacatcgaaggcgaaattctcaaggagatcaatgagaaaacagagatcagagccaaatatgatgaagcgaaggacatgaggttgtacccgcctattctaacagacaacaaagaggctgtagatggagcatatctggggcaaggactggccgagttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

109

Amino Acids

12.5

Weight (kDa)

4.74

Isoelectric Point (pI)

37.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019073)

Species Orthologous Gene IDs
rosa_laevigata RLG00000015938 RLG00000022485 RLG00000033286
rosa_multiflora Rmu_sc0004239.1_g000014
rosa_roxburghii Rroxscaffold_1G00024000
rosa_rugosa Rorug02G0287100
rosa_samantha Rh2BG292900 Rh2DG287800 Rh5DG009600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AciI CCGC 1 cut(s) 260
AcoI YGGCCR 2 cut(s) 58, 318
AcsI RAATTY 2 cut(s) 74, 186
AfaI GTAC 1 cut(s) 257
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 3 cut(s) 37, 54, 99
AluI AGCT 3 cut(s) 37, 54, 99
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 2 cut(s) 30, 45
AoxI GGCC 2 cut(s) 58, 318
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 2 cut(s) 74, 186
AsuHPI GGTGA 1 cut(s) 94
BalI TGGCCA 1 cut(s) 60
BanII GRGCYC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 118
BccI CCATC 2 cut(s) 174, 287
BciT130I CCWGG 1 cut(s) 142
BcoDI GTCTC 2 cut(s) 30, 45
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 20
BpuEI CTTGAG 2 cut(s) 70, 176
BsaJI CCNNGG 2 cut(s) 18, 126
Bse1I ACTGG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 2 cut(s) 18, 126
BseGI GGATG 1 cut(s) 166
BseNI ACTGG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 2 cut(s) 60, 320
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 131
BsmAI GTCTC 2 cut(s) 30, 45
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 2 cut(s) 60, 320
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 3 cut(s) 31, 198, 216
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 1 cut(s) 260
BspANI GGCC 2 cut(s) 60, 320
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 2 cut(s) 18, 126
BssMI GATC 3 cut(s) 31, 198, 216
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 142
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 3 cut(s) 34, 201, 219
BstMAI GTCTC 2 cut(s) 30, 45
BstMBI GATC 3 cut(s) 31, 198, 216
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 20
BsuRI GGCC 2 cut(s) 60, 320
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 166
CsiI ACCWGGT 1 cut(s) 140
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 19, 247
CviJI RGCY 9 cut(s) 37, 54, 60, 99, 131, 154, 224, 287, 320
CviKI_1 RGCY 9 cut(s) 37, 54, 60, 99, 131, 154, 224, 287, 320
CviQI GTAC 1 cut(s) 256
DpnI GATC 3 cut(s) 33, 200, 218
DpnII GATC 3 cut(s) 31, 198, 216
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 2 cut(s) 58, 318
Ecl136II GAGCTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 56
Eco53kI GAGCTC 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 2 cut(s) 22, 250
FaiI YATR 4 cut(s) 20, 231, 248, 301
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 18, 246
FauI CCCGC 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 153
FriOI GRGCYC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 2 cut(s) 60, 320
HapII CCGG 1 cut(s) 111
Hin1II CATG 2 cut(s) 22, 250
HinfI GANTC 1 cut(s) 23
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 94
Hpy188I TCNGA 3 cut(s) 67, 221, 329
Hpy188III TCNNGA 2 cut(s) 29, 49
HpyAV CCTTC 3 cut(s) 108, 173, 235
Hsp92II CATG 2 cut(s) 22, 250
Kzo9I GATC 3 cut(s) 31, 198, 216
LmnI GCTCC 1 cut(s) 296
LpnPI CCDG 7 cut(s) 42, 124, 127, 136, 154, 290, 302
Lsp1109I GCAGC 1 cut(s) 118
MabI ACCWGGT 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 79
MalI GATC 3 cut(s) 33, 200, 218
MboI GATC 3 cut(s) 31, 198, 216
MboII GAAGA 2 cut(s) 25, 139
MhlI GDGCHC 1 cut(s) 56
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 2 cut(s) 74, 186
MluNI TGGCCA 1 cut(s) 60
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 4 cut(s) 116, 136, 243, 277
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
MseI TTAA 1 cut(s) 137
MslI CAYNNNNRTG 1 cut(s) 66
Msp20I TGGCCA 1 cut(s) 60
MspA1I CMGCKG 1 cut(s) 37
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
NcoI CCATGG 1 cut(s) 18
NdeII GATC 3 cut(s) 31, 198, 216
NlaIII CATG 2 cut(s) 22, 250
NmeAIII GCCGAG 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 79
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
Psp124BI GAGCTC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 66
SacI GAGCTC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 3 cut(s) 31, 198, 216
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 1 cut(s) 56
SetI ASST 6 cut(s) 39, 56, 101, 128, 143, 254
SexAI ACCWGGT 1 cut(s) 140
SfcI CTRYAG 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 2 cut(s) 49, 191
SmoI CTYRAG 2 cut(s) 49, 191
Sse9I AATT 2 cut(s) 74, 186
SsiI CCGC 1 cut(s) 260
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 140
StyI CCWWGG 1 cut(s) 18
TaqI TCGA 1 cut(s) 177
TasI AATT 2 cut(s) 74, 186
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 26, 249
XapI RAATTY 2 cut(s) 74, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.